Development of 124 sequence-tagged sites and cytogenetic localization of 217 cosmids for human chromosome 10.

A total of 124 new chromosome 10-specific sequence-tagged sites (STSs) were derived from two sources: (1) DNA sequences obtained from anonymous clones in new libraries enriched for human chromosome 10 inserts, and (2) published sequences of genes and other loci already known to map to chromosome 10. Libraries were constructed from a somatic cell hybrid carrying human chromosomes 10 and Y. A cosmid library was made from total DNA of the hybrid and probed with labeled total human DNA to identify clones with human DNA inserts. Two hundred seventeen cosmids were mapped to regions of human chromosome 10 by fluorescence in situ hybridization. Twenty-five cosmids represent probes that have been placed on the genetic map previously. One hundred ninety-two cosmids represent new probes that have not been mapped previously. Cosmids carrying inserts with CA repeats were identified by hybridization with a labeled poly(dC-dA)-poly(dG-dT) probe and subcloned to yield microsatellite STS markers. Two small insert plasmid libraries were made, the first by subcloning inserts from a chromosome 10-enriched lambda phage library (LL10NS01) and the second by cloning Alu element-mediated PCR products amplified from hybrid DNA. STSs were generated from the DNA sequences of clone inserts. Chromosome 10-specific STSs were distinguished from Y chromosome STSs by one or both of the following criteria: (1) successful PCR amplification from a template consisting of DNA from another chromosome 10-containing cell line, NA10926B, or (2) FISH localization to chromosome 10 of the source cosmid or of YACs isolated by PCR screening with the STS. These libraries were the source of 90 new chromosome 10-specific STSs, 42 of which contain CA repeats.

Cell type specific electrophoretic polypeptide profiles of cultured bovine cells.

The polypeptide profiles of bovine vascular endothelial cells (from pulmonary artery and descending aorta), smooth muscle cells (from pulmonary artery) and fibroblast cells (from skin and lung) were examined by high-resolution two-dimensional polyacrylamide gel electrophoretic techniques. A set of polypeptides (molecular weights between 43 X 10(3) and 47 X 10(3) and pI values from 6.0-4.8, respectively) exhibited patterns that were unique to the three cell types. In the case of smooth muscle cells, these polypeptides exhibited cell-density-dependent expression. These results allow for identification of the three cell types on the basis of their highly specific polypeptide signatures.

The two-dimensional polypeptide profile of terminally non-dividing human diploid cells.

We have used high resolution two-dimensional polyacrylamide gel electrophoresis (PAGE) to compare the polypeptides synthesized by normal human diploid fibroblasts cells which have significant proliferative capacity with those of cells which are terminally non-dividing. Normal cells that are terminally non-dividing (i.e., have no remaining proliferative potential) synthesize two polypeptides that are not detected in young cells which are either actively proliferating or growth arrested by incubation in medium containing a low concentration of serum (0.3%) for 72 h. Continued maintenance of young cells in the growth-arrested state ultimately leads to the detectable synthesis of one of the polypeptides synthesized by terminally non-dividing cells. Some preliminary biochemical properties of these two polypeptides are examined.

A long-lived human diploid fibroblast line for cellular aging studies: applications in cell hybridization.

We have isolated a diploid fibroblast culture from human fetal lung with an in vitro lifespan of about 100 population doublings. The culture grows very well at clonal densities and long-lived clones can be isolated for use in cellular aging studies. The longer in vitro lifespan of the culture has allowed us to isolate from it a clone, containing a dominant and recessive mutation, having significant remaining proliferative potential. The nature of the mutations will allow for hybrid selection, after fusion of the mutant clone with wild type human cells. The mass culture and clones derived from it provide a valuable resource for cell aging studies.

Skin fibroblast cultures derived from members of the Baltimore longitudinal study: a new resource for studies of cellular aging.

Approximately 100 human fibroblast-like cell lines derived from the upper arms of members of the Baltimore Longitudinal Study have been deposited in the Aging Cell Bank at the Institute for Medical Research, Camden, N.J. These cell lines were derived from individuals ranging from 29 to 96 years in age. The in vitro lifespan of each culture has been estimated by the distribution of colony sizes. The availability of cell lines of known proliferative potential from donors of various ages should provide an important new resource for cellular aging studies.

A general method for determining the replicative age of normal animal cell cultures.

The percentage of cells capable of forming colonies of at least a given size has been found to provide a reliable estimate of the remaining doubling potential of several human diploid fibroblast cell lines and for chick embryo fibroblasts. In five independently derived cell lines of human diploid fibroblasts we have found the same linear relationship between population doublings remaining and the percentage of cells able to form colonies of at least 16 cells. For chick embryo fibroblasts there is a linear relationship between the percentage of cells forming colonies of 64 or more cells and remaining proliferative potential. When human diploid fibroblasts were grown in medium containing hydrocortisone at 5 microgram/ml the increased in vitro lifespan was reflected in the colony size distribution long before the end of the in vitro lifespan.

Growth of human embryonic fibroblasts at clonal density: concordance with results from mass cultures.

In the past, it has been difficult to grow human diploid fibroblast cells at clonal densities. Newly devised cell culture media and rigorously controlled environmental conditions have greatly increased the ease with which such cells can be cloned. The present work was undertaken to determine whether, under appropriate conditions, diploid fibroblast cells from human embryonic lung, grow as well at clonal densities as in mass culture. The parameters studied were: (1) population doubling time, (2) in vitro proliferative capacity, (3) attachment, (4) percentage of non-dividing cells. In all cases essentially the same results were obtained for cultures at clonal densities and mass cultures. These results indicate that the behavior of these types of cells in clonal culture can be used to infer the behavior of individual cells and clones within a mass culture.

Alteration in cellular RNAs during the in vitro lifespan of cultured human diploid fibroblasts. II. Synthesis and processing of RNA.

Incorporation of tritiated uridine into cellular RNA is decreased in senescent human fibroblast cultures when measured per cellular RNA content. Since early and late passage cells demonstrate similar kinetics of RNA precursor pool labeling and saturation, this decreased tritiated uridine incorporation reflects decreased RNA synthesis. However, cellular RNA contents are markedly elevated in senescent cell cultures. When data are measured per cell number or DNA content, net RNA synthesis is slightly increased in senescent cultures. Separation of labeled RNAs by polyacrylamide gel electrophoresis revealed the same diminished specific activities (CPM/RNA) and increased net synthesis (CPM/cell number) of major ribosomal and transfer RNAs. However, this slight increase in RNA synthesis is probably not of sufficient magnitude to completely explain the observed increase in cellular RNA content in senescent cells.