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1.
Mol Biol Evol ; 40(12)2023 Dec 01.
Article in English | MEDLINE | ID: mdl-38000891

ABSTRACT

Both homeologous exchanges and homeologous expression bias are generally found in most allopolyploid species. Whether homeologous exchanges and homeologous expression bias differ between repeated allopolyploid speciation events from the same progenitor species remains unknown. Here, we detected a third independent and recent allotetraploid origin for the model grass Brachypodium hybridum. Our homeologous exchange with replacement analyses indicated the absence of significant homeologous exchanges in any of the three types of wild allotetraploids, supporting the integrity of their progenitor subgenomes and the immediate creation of the amphidiploids. Further homeologous expression bias tests did not uncover significant subgenomic dominance in different tissues and conditions of the allotetraploids. This suggests a balanced expression of homeologs under similar or dissimilar ecological conditions in their natural habitats. We observed that the density of transposons around genes was not associated with the initial establishment of subgenome dominance; rather, this feature is inherited from the progenitor genome. We found that drought response genes were highly induced in the two subgenomes, likely contributing to the local adaptation of this species to arid habitats in the third allotetraploid event. These findings provide evidence for the consistency of subgenomic stability of parental genomes across multiple allopolyploidization events that led to the same species at different periods. Our study emphasizes the importance of selecting closely related progenitor species genomes to accurately assess homeologous exchange with replacement in allopolyploids, thereby avoiding the detection of false homeologous exchanges when using less related progenitor species genomes.


Subject(s)
Brachypodium , Brachypodium/genetics , Genome, Plant , Polyploidy
2.
Proc Natl Acad Sci U S A ; 120(45): e2304848120, 2023 Nov 07.
Article in English | MEDLINE | ID: mdl-37903254

ABSTRACT

Ecological divergence without geographic isolation, as an early speciation process that may lead finally to reproductive isolation through natural selection, remains a captivating topic in evolutionary biology. However, the pattern of genetic divergence underlying this process across the genome may vary between species and mating systems. Here, we present evidence that Brachypodium stacei, an annual and highly selfing grass model species, has undergone sympatric ecological divergence without geographic isolation. Genomic, transcriptomic, and metabolomic analyses together with lab experiments mimicking the two opposite environmental conditions suggest that diploid B. stacei populations have diverged sympatrically in two slopes characterized by distinct biomes at Evolution Canyon I (ECI), Mount Carmel, Israel. Despite ongoing gene flow, primarily facilitated by seed dispersal, the level of gene flow has progressively decreased over time. This local adaptation involves the scattered divergence of many unlinked loci across the total genome that include both coding genes and noncoding regions. Additionally, we have identified significant differential expressions of genes related to the ABA signaling pathway and contrasting metabolome composition between the arid- vs. forest-adapted B. stacei populations in ECI. These results suggest that multiple small loci involved in environmental responses act additively to account for ecological adaptations by this selfing species in contrasting environments.


Subject(s)
Brachypodium , Brachypodium/genetics , Diploidy , Reproductive Isolation , Ecosystem , Genome, Plant/genetics , Genetic Speciation
3.
4.
Biochim Biophys Acta ; 1864(5): 531-50, 2016 May.
Article in English | MEDLINE | ID: mdl-26555180

ABSTRACT

The ribosome is the cell's protein-making factory, a huge protein-RNA complex, that is essential to life. Determining the high-resolution structures of the stable "core" of this factory was among the major breakthroughs of the past decades, and was awarded the Nobel Prize in 2009. Now that the mysteries of the ribosome appear to be more traceable, detailed understanding of the mechanisms that regulate protein synthesis includes not only the well-known steps of initiation, elongation, and termination but also the less comprehended features of the co-translational events associated with the maturation of the nascent chains. The ribosome is a platform for co-translational events affecting the nascent polypeptide, including protein modifications, folding, targeting to various cellular compartments for integration into membrane or translocation, and proteolysis. These events are orchestrated by ribosome-associated protein biogenesis factors (RPBs), a group of a dozen or more factors that act as the "welcoming committee" for the nascent chain as it emerges from the ribosome. In plants these factors have evolved to fit the specificity of different cellular compartments: cytoplasm, mitochondria and chloroplast. This review focuses on the current state of knowledge of these factors and their interaction around the exit tunnel of dedicated ribosomes. Particular attention has been accorded to the plant system, highlighting the similarities and differences with other organisms.


Subject(s)
Macromolecular Substances/metabolism , Plants/genetics , Protein Biosynthesis/genetics , Ribosomes/genetics , Macromolecular Substances/chemistry , Plants/metabolism , Protein Folding , Protein Processing, Post-Translational , Proteolysis , Ribosomes/chemistry , Ribosomes/metabolism
5.
Am J Bot ; 102(7): 1073-88, 2015 Jul.
Article in English | MEDLINE | ID: mdl-26199365

ABSTRACT

UNLABELLED: • PREMISE OF THE STUDY: We conducted environmental niche modeling (ENM) of the Brachypodium distachyon s.l. complex, a model group of two diploid annual grasses (B. distachyon, B. stacei) and their derived allotetraploid (B. hybridum), native to the circum-Mediterranean region. We (1) investigated the ENMs of the three species in their native range based on present and past climate data; (2) identified potential overlapping niches of the diploids and their hybrid across four Quaternary windows; (3) tested whether speciation was associated with niche divergence/conservatism in the complex species; and (4) tested for the potential of the polyploid outperforming the diploids in the native range.• METHODS: Geo-referenced data, altitude, and 19 climatic variables were used to construct the ENMs. We used paleoclimate niche models to trace the potential existence of ancestral gene flow among the hybridizing species of the complex.• KEY RESULTS: Brachypodium distachyon grows in higher, cooler, and wetter places, B. stacei in lower, warmer, and drier places, and B. hybridum in places with intermediate climatic features. Brachypodium hybridum had the largest niche overlap with its parent niches, but a similar distribution range and niche breadth.• CONCLUSIONS: Each species had a unique environmental niche though there were multiple niche overlapping areas for the diploids across time, suggesting the potential existence of several hybrid zones during the Pleistocene and the Holocene. No evidence of niche divergence was found, suggesting that species diversification was not driven by ecological speciation but by evolutionary history, though it could be associated to distinct environmental adaptations.


Subject(s)
Brachypodium/genetics , Biological Evolution , Brachypodium/physiology , Climate , Diploidy , Ecology , Environment , Mediterranean Region , Models, Theoretical , Polyploidy , Species Specificity
6.
Theor Appl Genet ; 127(11): 2453-63, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25223542

ABSTRACT

KEY MESSAGE: Rapid LD decay in wild emmer population from Israel allows high-resolution association mapping. Known and putative new stripe rust resistance genes were found. Genome-wide association mapping (GWAM) is becoming an important tool for the discovery and mapping of loci underlying trait variation in crops, but in the wild relatives of crops the use of GWAM has been limited. Critical factors for the use of GWAM are the levels of linkage disequilibrium (LD) and genetic diversity in mapped populations, particularly in those of self-pollinating species. Here, we report LD estimation in a population of 128 accessions of self-pollinating wild emmer, Triticum turgidum ssp. dicoccoides, the progenitor of cultivated wheat, collected in Israel. LD decayed fast along wild emmer chromosomes and reached the background level within 1 cM. We employed GWAM for the discovery and mapping of genes for resistance to three isolates of Puccinia striiformis, the causative agent of wheat stripe rust. The wild emmer population was genotyped with the wheat iSelect assay including 8643 gene-associated SNP markers (wheat 9K Infinium) of which 2,278 were polymorphic. The significance of association between stripe rust resistance and each of the polymorphic SNP was tested using mixed linear model implemented in EMMA software. The model produced satisfactory results and uncovered four significant associations on chromosome arms 1BS, 1BL and 3AL. The locus on 1BS was located in a region known to contain stripe rust resistance genes. These results show that GWAM is an effective strategy for gene discovery and mapping in wild emmer that will accelerate the utilization of this genetic resource in wheat breeding.


Subject(s)
Basidiomycota , Disease Resistance/genetics , Linkage Disequilibrium , Triticum/genetics , Chromosome Mapping , Chromosomes, Plant , Genes, Plant , Genetic Association Studies , Genotype , Israel , Linear Models , Plant Diseases/genetics , Plant Diseases/microbiology , Polymorphism, Single Nucleotide , Triticum/microbiology
7.
Curr Protein Pept Sci ; 15(3): 232-44, 2014 May.
Article in English | MEDLINE | ID: mdl-24694364

ABSTRACT

Molecular chaperones, central to cellular protein homeostasis, are conserved within species. Hsp90 and its cochaperones participate in major cellular functions such as cell growth, response to biotic and abiotic stresses and differentiation, and are critical to the regulation of these functions. Regulation is done through their interacting with client proteins in various cellular compartments under specific conditions. Plant Hsp90 and its co-chaperones resemble their mammalian counterparts in their structure. They were shown to participate in diverse and unique pathways such as defense mechanism against pathogens, regulation of gene expression by regulation of the silencing of RNAs, transport of pre-proteins into chloroplasts and response to heat stress. In many cases, the Hsp90 interaction with the co-chaperone is a prerequisite to interaction with client proteins and regulation of their function. While our understanding of the interaction of plant Hsp90 and its co-chaperones has been greatly enhanced, the large number of isoforms in plants and the diverse molecular pathways specific to plants still leave many open questions about the regulation, specificity, and biophysical characteristics of the complexes formed and their contribution to the cellular homeostasis.


Subject(s)
HSP90 Heat-Shock Proteins/metabolism , Plant Proteins/metabolism , Animals , Chloroplasts/metabolism , Disease Resistance , Humans , Plant Cells/metabolism , Plant Diseases/immunology
8.
J Biol Phys ; 39(4): 635-48, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23996408

ABSTRACT

The protein ROF2 from the plant Arabidopsis thaliana acts as a heat stress modulator, being involved in the long-term acquired thermotolerance of the plant. Here we investigate the relationship between the biological function and the structure of ROF2, inferred by circular dichroism (CD) spectroscopy. The far-UV CD spectra, analyzed with the CDPro and DICHROWEB program packages, yield the percentages of α-helices, ß-sheets, unordered regions, turns and poly(Pro)II-helices in the secondary structure of ROF2. According to the analysis, the percentages of the structural elements of ROF2 are about 40% for ß-sheets, 30% for unordered regions, 17% for turns, 10% for poly(Pro)II-helices and 3% for α-helices. The near-UV CD spectra suggest that ROF2 proteins can associate, forming super-secondary structures. Our CD experiments performed at temperatures between 5 °C and 97 °C indicate that the thermal denaturation of ROF2 caused by a raise in temperature up to 55 °C is followed by a thermal refolding of the protein as the temperature is raised further. The new secondary structure, acquired around 65 °C, remains stable up to 97 °C. The structural stability of ROF2 at high temperatures might play an important role in the experimentally observed thermotolerance of Arabidopsis thaliana.


Subject(s)
Arabidopsis Proteins/chemistry , Arabidopsis , Peptidylprolyl Isomerase/chemistry , Circular Dichroism , Protein Stability , Protein Structure, Secondary , Temperature
9.
Plant Mol Biol ; 77(1-2): 105-15, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21633907

ABSTRACT

The involvement of type I chaperonins in bacterial and organellar protein folding has been well-documented. In E. coli and mitochondria, these ubiquitous and highly conserved proteins form chaperonin oligomers of identical 60 kDa subunits (cpn60), while in chloroplasts, two distinct cpn60 α and ß subunit types co-exist together. The primary sequence of α and ß subunits is ~50% identical, similar to their respective homologies to the bacterial GroEL. Moreover, the A. thaliana genome contains two α and four ß genes. The functional significance of this variability in plant chaperonin proteins has not yet been elucidated. In order to gain insight into the functional variety of the chloroplast chaperonin family members, we reconstituted ß homo-oligomers from A. thaliana following their expression in bacteria and subjected them to a structure-function analysis. Our results show for the first time, that A. thaliana ß homo-oligomers can function in vitro with authentic chloroplast co-chaperonins (ch-cpn10 and ch-cpn20). We also show that oligomers made up of different ß subunit types have unique properties and different preferences for co-chaperonin partners. We propose that chloroplasts may contain active ß homo-oligomers in addition to hetero-oligomers, possibly reflecting a variety of cellular roles.


Subject(s)
Arabidopsis Proteins/physiology , Arabidopsis/metabolism , Group I Chaperonins/physiology , Arabidopsis/genetics , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/genetics , Genome, Plant , Group I Chaperonins/chemistry , Group I Chaperonins/genetics , Protein Folding , Protein Isoforms/chemistry , Protein Isoforms/genetics , Protein Isoforms/physiology , Protein Subunits/chemistry , Protein Subunits/genetics , Protein Subunits/physiology
10.
Plant Mol Biol ; 74(1-2): 33-45, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20521085

ABSTRACT

Post-translational modification of target proteins by the small ubiquitin-like modifier protein (SUMO) regulate many cellular processes. In this work we show SUMOylation of the heat shock transcription factor, AtHsfA2, in connection with the plant's response to heat stress and acquired thermotolerance. Using the Yeast two hybrid and the bimolecular fluorescence complementation system, we have found that AtSUMO1 physically interacts with AtHsfA2. Further investigation allowed us to determine that Lys 315 of AtHsfA2 is the main SUMOylation site. Overexpression of AtSUMO1 led to a decrease in AtHsfA2 transcriptional activation of heat shock promoters. We have examined the effect of AtSUMO1 on AtHsfA2 during heat shock treatments. The phenotype of seedlings overexpressing AtSUMO1 resembled the phenotype of AtHsfA2 knock out seedlings, which were more sensitive than wild type seedlings to repeated heat treatment. Furthermore, AtSUMO1 overexpressing seedlings exhibited lower expression levels of small heat shock proteins as compared with wild type seedlings after heat treatment. Based on our findings, we suggest that AtSUMO1 is involved in the regulation of AtHsfA2 in acquired thermotolerance.


Subject(s)
Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Arabidopsis/genetics , Arabidopsis/metabolism , DNA-Binding Proteins/metabolism , Heat-Shock Proteins/metabolism , Plant Proteins/metabolism , Transcription Factors/metabolism , Arabidopsis Proteins/chemistry , Base Sequence , DNA Primers/genetics , DNA, Plant/genetics , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/genetics , Gene Expression Regulation, Plant , Gene Knockout Techniques , Genes, Plant , Heat Shock Transcription Factors , Heat-Shock Proteins/chemistry , Heat-Shock Proteins/genetics , Heat-Shock Response/genetics , Hot Temperature , Lysine/chemistry , Mutagenesis, Site-Directed , Phenotype , Plant Proteins/chemistry , Plant Proteins/genetics , Plants, Genetically Modified , Protein Interaction Domains and Motifs , Protein Processing, Post-Translational , Seedlings/genetics , Seedlings/metabolism , Transcription Factors/chemistry , Transcription Factors/genetics , Two-Hybrid System Techniques
11.
J Struct Funct Genomics ; 11(2): 113-23, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20306145

ABSTRACT

Here we describe the crystal structure of the N-terminal domain of the FK506-binding protein (FKBP) from wheat (wFKBP73), which is the first structure presenting three FK domains (wFK73_1, wFK73_2 and wFK73_3). The crystal model includes wFK73_2 and wFK73_3 domains and only part of the wFK73_1 domain. The wFK73_1 domain is responsible for binding FK506 and for peptidyl prolyl cis/trans isomerase (PPIase) activity, while the wFK73_2 and wFK73_3 domains lack these activities. A structure-based sequence comparison demonstrated that the absence of a large enough hydrophobic pocket important for PPIase activity, and of the conserved residues necessary for drug binding in the wFK73_2 and wFK73_3 domains explains the lack of these activities in these domains. Sequence and structural comparison between the three wFKBP73 domains suggest that the wFK73_2 domain is the most divergent. A structural comparison of the FK domains of wFKBP73 with other FKBPs containing more than one FK domain, revealed that while the overall architecture of each of the three FK domains displays a typical FKBP fold, their relative arrangement in space is unique and may have important functional implications. We suggest that the existence of FKBPs with three FK domains offers additional interactive options for these plant proteins enlarging the overall regulatory functions of these proteins.


Subject(s)
Tacrolimus Binding Proteins/chemistry , Triticum/metabolism , Amino Acid Sequence , Catalysis , Crystallization , Crystallography, X-Ray , Molecular Sequence Data , Protein Conformation , Protein Folding , Protein Structure, Tertiary , Sequence Homology, Amino Acid , Tacrolimus/metabolism , Triticum/growth & development
12.
Plant Mol Biol ; 72(1-2): 191-203, 2010 Jan.
Article in English | MEDLINE | ID: mdl-19876748

ABSTRACT

The ROF2 (FKBP65) is a heat stress protein which belongs to the FK506 Binding Protein (FKBP) family. It is homologous to ROF1 (FKBP62) which was recently shown to be involved in long term acquired thermotolerance by its interaction with HSP90.1 and modulation of the heat shock transcription factor HsfA2. In this study, we have demonstrated that ROF2 participates in long term acquired thermolerance, its mode of action being different from ROF1. In the absence of ROF2, the small heat shock proteins were highly expressed and the plants were resistant to heat stress, opposite to the effect observed in the absence of ROF1. It was further demonstrated that ROF2 transcription is modulated by HsfA2 which is also essential for keeping high levels of ROF2 during recovery from heat stress. ROF2 localization to the nucleus was observed several hours after heat stress exposure and its translocation to the nucleus was independent from the presence of HSP90.1 or HsfA2. ROF2 has been shown to interact with ROF1, to form heterodimers and it is suggested that via this interaction it can join the complex ROF1-HSP90.1- HsfA2. Transient expression of ROF2 together with ROF1 repressed transcription of small HSPs. A model describing the mode of action of ROF2 as a heat stress modulator which functions in negative feedback regulation of HsfA2 is proposed.


Subject(s)
Arabidopsis Proteins/physiology , Arabidopsis/physiology , Gene Expression Regulation, Plant/physiology , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Blotting, Western , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , DNA-Binding Proteins/physiology , Electrophoresis, Polyacrylamide Gel , Fluorometry , Gene Expression Regulation, Plant/genetics , Heat Shock Transcription Factors , Heat-Shock Proteins/genetics , Heat-Shock Proteins/metabolism , Heat-Shock Proteins/physiology , Hot Temperature , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Proteins/physiology , Reverse Transcriptase Polymerase Chain Reaction , Tacrolimus Binding Proteins/genetics , Tacrolimus Binding Proteins/metabolism , Tacrolimus Binding Proteins/physiology , Transcription Factors/genetics , Transcription Factors/metabolism , Transcription Factors/physiology , Two-Hybrid System Techniques
13.
Plant J ; 59(3): 387-99, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19366428

ABSTRACT

Arabidopsis ROF1 (AtFKBP62) is a peptidyl prolyl cis/trans isomerase and a member of the FKBP (FK506 binding protein) family. ROF1 expression is induced by heat stress and developmentally regulated. In this study, we show that ROF1 binds heat shock proteins HSP90.1 via its tetratricopeptide repeat domain, and localizes in the cytoplasm under normal conditions. Exposure to heat stress induces nuclear localization of the ROF1-HSP90.1 complex, which is dependent upon the presence of the transcription factor HsfA2, which interacts with HSP90.1 but not with ROF1. Nuclear localization of ROF1 was not detected in Arabidopsis HSP90.1 and HsfA2 knockout mutants. The rof1 knockout plants exhibited collapse when 24-48 h passed between acclimation at 37 degrees C and exposure to 45 degrees C. Transgenic ROF1 over-expressors showed better survival in response to exposure to 45 degrees C than wild-type plants did. In rof1 knockout mutants, the level of expression of small HSPs regulated by HsfA2 was dramatically reduced after exposure to 37 degrees C and recovery for 24-48 h, and correlates well with the mutant phenotype. We suggest a role for ROF1 in prolongation of thermotolerance by sustaining the levels of small HSPs that are essential for survival at high temperatures.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/physiology , DNA-Binding Proteins/metabolism , HSP90 Heat-Shock Proteins/metabolism , Heat-Shock Proteins/metabolism , Plant Proteins/metabolism , Tacrolimus Binding Proteins/metabolism , Transcription Factors/metabolism , Arabidopsis/genetics , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Gene Expression Regulation, Plant , Gene Knockout Techniques , Heat Shock Transcription Factors , Hot Temperature , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Plants, Genetically Modified/physiology , Protein Binding , RNA, Plant/genetics , Tacrolimus Binding Proteins/genetics , Two-Hybrid System Techniques
14.
Plant Mol Biol ; 63(2): 237-55, 2007 Jan.
Article in English | MEDLINE | ID: mdl-17080288

ABSTRACT

The plant co-chaperones FK506-binding proteins (FKBPs) are peptidyl prolyl cis-trans isomerases that function in protein folding, signal transduction and chaperone activity. We report the characterization of the Arabidopsis large FKBPs ROF1 (AtFKBP62) and ROF2 (AtFKBP65) expression and protein accumulation patterns. Transgenic plants expressing ROF1 promoter fused to GUS reporter gene reveal that ROF1 expression is organ specific. High expression was observed in the vascular elements of roots, in hydathodes and trichomes of leaves and in stigma, sepals, and anthers. The tissue specificity and temporal expression of ROF1 and ROF2 show that they are developmentally regulated. Although ROF1 and ROF2 share 85% identity, their expression in response to heat stress is differentially regulated. Both genes are induced in plants exposed to 37 degrees C, but only ROF2 is a bonafide heat-stress protein, undetected when plants are grown at 22 degrees C. ROF1/ROF2 proteins accumulate at 37 degrees C, remain stable for at least 4 h upon recovery at 22 degrees C, whereas, their mRNA level is reduced after 1 h at 22 degrees C. By protein interaction assays, it was demonstrated, that ROF1 is a novel partner of HSP90. The five amino acids identified as essential for recognition and interaction between the mammalian chaperones and HSP90 are conserved in the plant ROF1-HSP90. We suggest that ROF/HSP90 complexes assemble in vivo. We propose that specific complexes formation between an HSP90 and ROF isoforms depends on their spatial and temporal expression. Such complexes might be regulated by environmental conditions such as heat stress or internal cues such as different hormones.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/chemistry , HSP90 Heat-Shock Proteins/metabolism , Heat Stress Disorders/metabolism , Immunophilins/metabolism , Tacrolimus Binding Proteins/metabolism , Gene Expression Regulation, Plant , Organ Specificity
15.
J Exp Bot ; 54(393): 2679-89, 2003 Dec.
Article in English | MEDLINE | ID: mdl-14585827

ABSTRACT

Wheat root tips express a 73 kDa cognate isoform and a 77 kDa heat-shock-induced isoform of peptidyl prolyl cis-trans isomerase (FK506 binding protein; FKBP) that is part of a chaperone complex with hsp90. The 73 kDa and 77 kDa FKBPs have very similar sequences, differing primarily in the N- and C-terminal 20 amino acids. In order to define the potential functional roles of these proteins, the 73 kDa and 77 kDa FKBPs were localized in root tips using antigen-affinity purified antibodies as a probe. The cognate 73 kDa FKBP is localized in the cytoplasm and appears enriched around the periphery of the early vacuole and vesicles exiting the trans-Golgi. Parallel assays with antibodies directed against tonoplast aquaporin and pyrophosphatase confirmed the association of FKBP with an early vacuole compartment. Sucrose gradient centrifugation analysis of root tip lysates also showed that 73 kDa FKBP is co-fractionated with tonoplast aquaporin and V-ATPase in a light compartment near the top of the gradient. Heat-shock treatment of root tips induces the accumulation of 77 kDa FKBP while the abundance of 73 kDa FKBP remains constant. Quantitative EM immunogold assays of the intracellular distribution of FKBP over an 8 h heat-shock time-course showed that FKBP is initially present in the cytoplasm, but is transported into the nucleus where it accumulates in the nucleoplasm and into specific subnuclear domains. The results of this study show that the intracellular distribution of the high Mr FKBPs in wheat root tips differs at normal and elevated temperatures, indicating different functional roles for the FKBP isoforms.


Subject(s)
Peptidylprolyl Isomerase/metabolism , Tacrolimus Binding Proteins/metabolism , Cell Nucleus/enzymology , Cytoplasm/enzymology , Electrophoresis, Gel, Two-Dimensional , Enzyme Induction , Hot Temperature , Isoenzymes/biosynthesis , Isoenzymes/metabolism , Microscopy, Immunoelectron , Peptidylprolyl Isomerase/isolation & purification , Peptidylprolyl Isomerase/ultrastructure , Plant Roots/enzymology , Plant Roots/ultrastructure , Tacrolimus Binding Proteins/isolation & purification , Tacrolimus Binding Proteins/ultrastructure , Vacuoles/enzymology , Vacuoles/ultrastructure
16.
Transgenic Res ; 11(4): 321-35, 2002 Aug.
Article in English | MEDLINE | ID: mdl-12212836

ABSTRACT

The FK506-binding proteins (FKBPs) are peptidyl prolyl cis/trans isomerases and the information gathered in the last 10 years reveals their involvement in diverse biological systems affecting the function and structure of target proteins. Members of the FKBP family were shown to be growth-regulated and participate in signal transduction. In this review we have chosen to focus on a few examples of the mammalian and plant systems in which members of the FKBP family have been demonstrated to affect the function of proteins or development. The technologies that enable production of knockout mice, Arabidopsis mutants and overexpression in transgenic organisms have revealed the contribution of FKBP to development in higher eukaryotes. It appears that members of the FKBP family have conserved some of their basic functions in the animal and plant kingdom, whereas other functions became unique. Studies that will take advantage of the full genome sequence available for Arabidopsis and the human genome, DNA chip technologies and the use of transgenic complementation system will contribute to the elucidation of the molecular mechanism and biological function of FKBPs.


Subject(s)
Tacrolimus Binding Proteins/genetics , Amino Acid Sequence , Animals , Humans , Mammals , Mice , Mice, Knockout , Mice, Transgenic , Molecular Sequence Data , Plants, Genetically Modified , Sequence Alignment , Sequence Homology, Amino Acid , Tacrolimus Binding Protein 1A/genetics , Tacrolimus Binding Proteins/deficiency
17.
Transgenic Res ; 11(4): 373-9, 2002 Aug.
Article in English | MEDLINE | ID: mdl-12212840

ABSTRACT

The FK506-binding proteins (FKBPs) belong to the peptidyl prolyl cis-trans isomerase (PPIase) family, and catalyse the rotation of the peptide bond preceding a proline. They are conserved in organisms from bacteria to man. In order to understand the function of plant FKBP isoforms, we have produced transgenic wheat plants overexpressing each of the two wheat FKBPs: wFKBP73 (which is expressed in young vegetative and reproductive tissues under normal growth conditions) and wFKBP77 (which is induced by heat stress). Transgenic lines overexpressing wFKBP77 at 25 degrees C showed major morphological abnormalities, specifically relating to height, leaf shape, spike morphology and sterility. In these plants, the levels of hsp90 mRNA were over two fold higher than in controls, indicating a common regulatory pathway shared between wFKBP77 and Hsp90. Transgenic lines overexpressing wFKBP73 showed normal vegetative morphology, but the grain weight and composition was altered, corresponding to changes in amylase activity during seed development.


Subject(s)
Gene Expression Regulation, Plant , Plant Proteins/genetics , Plants, Genetically Modified/genetics , Tacrolimus Binding Proteins/genetics , Triticum/genetics , Conserved Sequence , Humans , Protein Isoforms/genetics , RNA, Ribosomal/genetics
18.
Planta ; 215(1): 119-26, 2002 May.
Article in English | MEDLINE | ID: mdl-12012248

ABSTRACT

Peptidyl-prolyl cis-trans isomerases (PPIases) catalyse protein folding by accelerating the slow step of cis-trans isomerisation of peptidyl-prolyl bonds. Wheat (Triticum aestivum L.) FKBP73 (wFKBP73) is a peptidyl-prolyl cis-trans isomerase belonging to the FK506-binding protein (FKBP) family. It comprises three FKBP12-like domains, tetratricopeptide repeats and a calmodulin-binding domain (CaMbd). In vitro studies indicated that wFKBP73 possesses PPIase activity, binds calmodulin and forms a heterocomplex with mammalian p23 and wheat Hsp90 in wheat-germ lysate. To further study the role of wFKBP73 we have analysed its chaperone properties. Using the thermal unfolding and aggregation of citrate synthase (CS) as a model system, we have shown that the plant wFKBP73 exhibits chaperone activity, being able to suppress CS aggregation independently of its PPIase activity. The wFKBP73 interacts transiently with non-native CS and slows down its inactivation kinetics, whereas the mammalian homologue, hFKBP52 binds tightly to CS and does not affect its rate of inactivation. Hence, the first plant FKBP shown to function as a molecular chaperone has a mode of action different from that of the mammalian FKBP52.


Subject(s)
Molecular Chaperones/metabolism , Peptidylprolyl Isomerase/metabolism , Triticum/metabolism , Calmodulin-Binding Proteins/metabolism , Citrate (si)-Synthase/chemistry , Citrate (si)-Synthase/metabolism , Enzyme Activation , HSP90 Heat-Shock Proteins/metabolism , Histidine/metabolism , Protein Folding , Tacrolimus Binding Protein 1A/metabolism , Tacrolimus Binding Proteins/metabolism , Temperature
19.
Biochemistry ; 41(17): 5581-7, 2002 Apr 30.
Article in English | MEDLINE | ID: mdl-11969419

ABSTRACT

Both plant and animal cells contain high molecular weight immunophilins that bind via tetratricopeptide repeat (TPR) domains to a TPR acceptor site on the ubiquitous and essential protein chaperone hsp90. These hsp90-binding immunophilins possess the signature peptidylprolyl isomerase (PPIase) domain, but no role for their PPIase activity in protein folding has been demonstrated. From the study of glucocorticoid receptor (GR).hsp90.immunophilin complexes in mammalian cells, there is considerable evidence that both hsp90 and the FK506-binding immunophilin FKBP52 play a role in receptor movement from the cytoplasm to the nucleus. The role of FKBP52 is to target the GR.hsp90 complex to the nucleus by binding via its PPIase domain to cytoplasmic dynein, the motor protein responsible for retrograde movement along microtubules. Here, we use rabbit cytoplasmic dynein as a surrogate for the plant homologue to show that two hsp90-binding immunophilins of wheat, wFKBP73 and wFKBP77, bind to dynein. Binding to dynein is blocked by competition with a purified FKBP52 fragment comprising its PPIase domain but is not affected by the immunosuppressant drug FK506, suggesting that the PPIase domain but not PPIase activity is involved in dynein binding. The hsp90/hsp70-based chaperone system of wheat germ lysate assembles complexes between mouse GR and wheat hsp90. These receptor heterocomplexes contain wheat FKBPs, and they bind rabbit cytoplasmic dynein in a PPIase domain-specific manner. Retention by plants of the entire heterocomplex assembly machinery for linking the GR to dynein implies a fundamental role for this process in the biology of the eukaryotic cell.


Subject(s)
Dyneins/metabolism , HSP90 Heat-Shock Proteins/metabolism , Immunophilins/metabolism , Receptors, Glucocorticoid/metabolism , Triticum , Animals , Cell-Free System/metabolism , Cytoplasm/enzymology , Intramolecular Oxidoreductases , Macromolecular Substances , Mice , Molecular Chaperones/metabolism , Nuclear Proteins/metabolism , Phosphoprotein Phosphatases/metabolism , Phosphoproteins/metabolism , Plant Proteins/metabolism , Prostaglandin-E Synthases , Protein Binding , Rabbits , Rats , Reticulocytes/metabolism , Tacrolimus Binding Proteins/metabolism , Triticum/enzymology , Triticum/metabolism
20.
Plant Mol Biol ; 48(4): 369-81, 2002 Mar.
Article in English | MEDLINE | ID: mdl-11905964

ABSTRACT

Wheat FKBP73 (wFKBP73) belongs to the FK506-binding protein (FKBP) family which, in common with the cyclophilin and parvulin families, possesses peptidyl prolyl cis-trans isomerase (PPIase) activity. Wheat FKBP73 has been shown to contain three FKBP12-like domains, a tetratricopeptide repeat (TPR) via which it binds heat shock protein 90 and a calmodulin-binding domain (CaMbd). In this study we investigated: (1) the contribution of the N-terminal and C-terminal moieties of wFKBP73 to its biological activity by over-expression of the prolyl isomerase domains in transgenic rice, and (2) the biochemical characteristics of the C-terminal moiety. The recombinant wFKBP73 was found to bind calmodulin via the CaMbd and to be present mainly as a dimer in solution. The dimerization was abrogated when 138 amino acids from the C-terminal half were deleted. Expression of the full-length FKBP73 produced fertile rice plants, whereas the expression of the peptidyl prolyl cis-trans isomerase domains in transgenic rice resulted in male-sterile plants. The male sterility was expressed at various stages of anther development with arrest of normal pollen development occurring after separation of the microspores from the tetrads. Although the direct cause of the dominant male sterility is not yet defined, we suggest that it is associated with a novel interaction of the prolyl isomerase domains with anther specific target proteins.


Subject(s)
Calmodulin/metabolism , Gene Deletion , Oryza/genetics , Tacrolimus Binding Proteins/genetics , Triticum/genetics , Binding Sites/genetics , Calmodulin-Binding Proteins/chemistry , Calmodulin-Binding Proteins/genetics , Calmodulin-Binding Proteins/metabolism , Dimerization , Gene Expression Regulation, Plant , Genotype , Microscopy, Electron, Scanning , Mutation , Oryza/physiology , Plants, Genetically Modified , Pollen/genetics , Pollen/ultrastructure , Protein Binding , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Seeds/genetics , Tacrolimus Binding Proteins/chemistry , Tacrolimus Binding Proteins/metabolism
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