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1.
Public Health ; 180: 82-84, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31864155

ABSTRACT

OBJECTIVES: The objective of the study was to estimate the national rates of naloxone coprescribing with opioids in office-based practice and emergency department (ED) settings in the United States (US). STUDY DESIGN: This study is a cross-sectional study. METHODS: We used the National Ambulatory Medical Care Survey (NAMCS) and the National Hospital Ambulatory Medical Care Survey (NHAMCS) datasets to estimate the national rates of naloxone coprescribing with opioids for the period 2014-2016. The analysis was stratified into office-based practice and ED settings. In ED settings, opioid and naloxone could be given to patients while they were in ED or as a prescription at discharge. Patients of all ages were considered for the analysis and sampling weights were applied to estimate national rates. RESULTS: In office-based settings, 7918 sample visits included one or more opioid prescriptions (10.67 per 100 office visits). Of those, one included naloxone as a coprescription. In ED settings, the opioid prescription was given at discharge in 6124 sample visits (9.68 per 100 ED visits). Of those, two included naloxone as a coprescription. On the other hand, opioid was given to patients in the ED in 8811 sample visits (13.57 per 100 ED visits). Of those, 30 included naloxone as a coprescription. CONCLUSIONS: The rates of naloxone coprescribing with opioids were extremely low in office-based and ED settings in the US. Expanding access to naloxone is a key component of the public health response to the opioid crisis. Based on our study findings, promoting the coprescription of naloxone with opioids may provide greater access to naloxone for those who are at risk of opioid overdose.


Subject(s)
Analgesics, Opioid/therapeutic use , Drug Prescriptions/statistics & numerical data , Emergency Service, Hospital/statistics & numerical data , Naloxone , Office Visits/statistics & numerical data , Adult , Cross-Sectional Studies , Female , Health Care Surveys , Humans , Male , Middle Aged , United States
2.
J Hand Surg Eur Vol ; 40(9): 987-94, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26221011

ABSTRACT

UNLABELLED: Andreas Vesalius (1515-1564) was the first to market an illustrated text on the freshly dissected muscular anatomy of the human hand and forearm when he published his De Fabrica Corporis Humani Libri Septem, in 1543. To commemorate his 500th birthday, we searched the second of seven books composing De Fabrica, the annotated woodcut illustrations of De Fabrica, the Tabulae Sex, and Epitome, and an eyewitness report of a public dissection by Vesalius for references to the morphology and functions of these muscles. We found Vesalius to have recognized all currently distinguished muscles except the palmaris brevis and he noted occasional absence of some muscles. Generally, he limited the origin and insertion to bones, largely disregarding attachments to membranes and fascia. Functionally, he recorded the muscles as having a single vector and operating on only one joint. We conclude that Vesalius was nearly completely correct about the anatomy of the muscles of the forearm, but much less accurate about their function. LEVEL OF EVIDENCE: 5.


Subject(s)
Anatomy/history , Hand/anatomy & histology , Medical Illustration/history , Muscle, Skeletal/anatomy & histology , Europe , History, 16th Century , Humans , Muscle, Skeletal/physiology , Reference Books, Medical
3.
Transpl Infect Dis ; 17(2): 192-200, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25662181

ABSTRACT

BACKGROUND: The use of potent immunosuppressive drugs and increased travel by renal transplant recipients (RTR) has augmented the risk for infectious complications. Immunizations and changes in lifestyle are protective. The Kidney Disease: Improving Global Outcomes (KDIGO) Transplant Work Group has developed guidelines on vaccination following solid organ transplantation. The degree of adherence to these guidelines is unknown, as is which barriers must be overcome to improve adherence. METHODS: We performed a cross-sectional national survey among Dutch nephrologists to assess vaccination policy and adherence to the KDIGO guidelines. In addition, to investigate awareness and attitude of RTR regarding their risk of infection, we performed a cross-sectional survey of RTR in our outpatient clinic. RESULTS: A total of 132 (63%) nephrologists completed the survey. Reported immunization rates were 90.8% for influenza and 27.3% for hepatitis B. However, pneumococcal, tetanus toxoid, and meningococcal immunization rates were low. Twenty-seven percent of respondents were familiar with the guideline contents. The most frequent perceived barrier to guideline adherence was expectation of low effectiveness. A total of 403 RTR (62%) completed the survey. Sixty-eight percent perceived more risk for complicated infection. A significant correlation was found between education level and variables concerning awareness and attitude toward risk of infection. CONCLUSIONS: Our results show that nephrologists' knowledge of and adherence to the recommendations regarding immunization after renal transplantation is suboptimal. Most Dutch RTR are aware of their increased risk and the possible seriousness of infectious complications. However, their behavior does not match their awareness. This disparity points to an important role for nephrologists in providing adequate counseling.


Subject(s)
Guideline Adherence/statistics & numerical data , Kidney Transplantation , Nephrology , Practice Guidelines as Topic , Practice Patterns, Physicians'/statistics & numerical data , Vaccination/methods , Attitude of Health Personnel , Clinical Competence , Cross-Sectional Studies , Hepatitis B/prevention & control , Hepatitis B Vaccines/therapeutic use , Humans , Influenza Vaccines/therapeutic use , Influenza, Human/prevention & control , Meningococcal Infections/prevention & control , Meningococcal Vaccines/therapeutic use , Netherlands , Pneumococcal Infections/prevention & control , Pneumococcal Vaccines/therapeutic use , Tetanus/prevention & control , Tetanus Toxoid/therapeutic use , Travel
4.
Cytometry A ; 77(6): 546-51, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20131398

ABSTRACT

Polychromatic flow cytometric analysis takes advantage of the increasing number of available fluorophores to positively identify and simultaneously assess multiple parameters in the same cell (1). Additional parameters may be analyzed through negative identification (i.e., through exclusion of particular stains or antibodies employed). In this report, we tested whether such negative-gating strategy would identify human B lymphocytes in innate immune phenotyping studies. To this end, B cells were identified as the negatively-stained subpopulation from the CD123 vs. CD11c plot of the CD14(neg-low), MHC II(high) human peripheral blood mononuclear cells. To test the specificity of this negative gating approach, we confirmed that negatively gated B cells indeed expressed CD19, the bona fide marker for human B cells. However, a small number of unidentified cells were contained in the negatively-gated B cells. Furthermore, a small percentage cells expressing markers used to identify monocytes and myeloid dendritic cells (mDC) coexpressed CD19. This identifies such negative B-cell gating approach as potentially problematic. When applied to the analysis of Toll-like receptors (TLR) stimulation experiments, we were however able to interpret the results, as B-cells respond to TLR stimulation in a qualitative different pattern as compared to monocytes and DC. This report is presented in a manner that is fully compliant with the Minimum Information about a Flow Cytometry Experiment (MIFlowCyt) standard, which was recently adopted by the International Society for Advancement of Cytometry (ISAC) (2) and incorporated in the publishing policies of Cytometry and other journals. We demonstrate how a MIFlowCyt-compliant report can be prepared with minimal effort, and yet provide the reader with a much clearer picture of the portrayed FCM experiment and data.


Subject(s)
Antigens, CD19/metabolism , B-Lymphocytes/chemistry , Flow Cytometry/methods , Adult , B-Lymphocytes/classification , B-Lymphocytes/cytology , Humans , Middle Aged , Reference Standards , Staining and Labeling
5.
Bone Marrow Transplant ; 42(9): 601-8, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18695664

ABSTRACT

Outcome is poor with conventional therapy for relapsed transformed non-Hodgkin's lymphoma (NHL). Autologous SCT has been successfully employed; however the impact of allogeneic SCT has not been well defined. We therefore studied 40 consecutive patients who received allogeneic SCT for relapsed composite and transformed NHL (25 transformed, 8 composite (same site) and 7 discordant (different sites)) with related (n=25) and unrelated donors (n=15) to evaluate long-term outcome. Conditioning was myeloablative in the majority (39 of 40). Of 40 patients, 11 survive with median follow-up of 25 months. Death occurred in similar proportions due to relapsed NHL (n=14) or treatment-related complications (transplant-related mortality, TRM; n=15). The cumulative incidence of TRM was 36% at 3 years and disease relapse was 42% at 5 years. Probability of 2- and 5-year event-free survival is 36 and 23% with overall survival 39 and 23%. Performance of SCT within 1 year of NHL diagnosis predicted improved outcome. Relapse and TRM remain significant problems in this setting, indicating the need for strategies whereby patients at high risk of transformation should be selected for early SCT, ideally before their actual transformation.


Subject(s)
Living Donors , Lymphoma, Non-Hodgkin/therapy , Stem Cell Transplantation/methods , Adult , Female , Graft vs Host Disease/prevention & control , Humans , Lymphoma, Non-Hodgkin/pathology , Male , Middle Aged , Neoplasm Recurrence, Local/pathology , Survival Rate , Transplantation Conditioning/methods , Treatment Outcome
6.
Mar Pollut Bull ; 52(10): 1138-55, 2006 Oct.
Article in English | MEDLINE | ID: mdl-16987532

ABSTRACT

A workshop organized in French Polynesia in November 2004 allowed reviewing the current methods to model the three-dimensional hydrodynamic circulation in semi-enclosed atoll lagoons for aquaculture applications. Mollusk (e.g. pearl oyster, clam) aquaculture is a major source of income for South Pacific countries such as French Polynesia or Cook Islands. This aquaculture now requires a better understanding of circulation patterns to improve the spatial use of the lagoons, especially to define the best area to set larvae collectors. The pelagic larval duration of the relevant species (<20 days) and the size of the semi-closed lagoons (few hundreds of km2) drive the specifications of the model in terms of the spatial and temporal scale. It is considered that, in contrast with fish, mollusk larvae movements are limited and that their cycle occurs completely in the lagoon, without an oceanic stage. Atolls where aquaculture is productive are generally well-bounded, or semi-closed, without significant large and deep openings to the ocean. Nevertheless part of the lagoon circulation is driven by oceanic water inputs through the rim, ocean swells, tides and winds. Therefore, boundary conditions of the lagoon system are defined by the spatial structure of a very shallow rim (exposition and number of hoas), the deep ocean swell climate, tides and wind regimes. To obtain a realistic 3D numerical model of lagoon circulation with adequate forcing, it is thus necessary to connect in an interdisciplinary way a variety of methods (models, remote sensing and in situ data collection) to accurately represent the different components of the lagoon system and its specific boundary conditions. We review here the current methods and tools used to address these different components for a hypothetical atoll of the Tuamotu Archipelago (French Polynesia), representative of the semi-closed lagoons of the South Pacific Ocean. We hope this paper will serve as a guide for similar studies elsewhere and we provide guidelines in terms of costs for all the different stages involved.


Subject(s)
Aquaculture/methods , Imaging, Three-Dimensional , Models, Theoretical , Water Movements , Animals , Atmosphere , Geography , Pacific Islands , Pacific Ocean , Pinctada/growth & development
7.
Clin Genet ; 65(4): 267-77, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15025718

ABSTRACT

Huntington's disease (HD) is a neurodegenerative disorder caused by an unstable CAG repeat. For patients at risk, participating in predictive testing and learning of having CAG expansion, a major unanswered question shifts from "Will I get HD?" to "When will it manifest?" Using the largest cohort of HD patients analyzed to date (2913 individuals from 40 centers worldwide), we developed a parametric survival model based on CAG repeat length to predict the probability of neurological disease onset (based on motor neurological symptoms rather than psychiatric onset) at different ages for individual patients. We provide estimated probabilities of onset associated with CAG repeats between 36 and 56 for individuals of any age with narrow confidence intervals. For example, our model predicts a 91% chance that a 40-year-old individual with 42 repeats will have onset by the age of 65, with a 95% confidence interval from 90 to 93%. This model also defines the variability in HD onset that is not attributable to CAG length and provides information concerning CAG-related penetrance rates.


Subject(s)
Age of Onset , Huntington Disease/genetics , Models, Genetic , Penetrance , Trinucleotide Repeats , DNA Sequence, Unstable , Humans , Likelihood Functions , Logistic Models , Predictive Value of Tests
8.
Clin Genet ; 64(4): 300-9, 2003 Oct.
Article in English | MEDLINE | ID: mdl-12974735

ABSTRACT

The promise of genetic medicine is to provide information, based on genotype, to persons not yet sick about their risk of future illness. However, little is known of the long-term psychological effects for asymptomatic persons learning their risk of having a serious disease. Predictive genetic testing for Huntington's disease (HD) has been offered for the longest time for any disease. In the present study, the psychological consequences of predictive testing were assessed prospectively in individuals at risk for HD during seven visits over 5 years. Questionnaires of standard measures of psychological distress (the General Severity Index of the Symptom Check List-90-Revised), depression (the Beck Depression Inventory), and general well-being (the General Well-Being Scale) were administered to the participants. A significant reduction in psychological distress was observed for both result groups throughout 2 years (p < 0.001) and at 5 years (p = 0.002). Despite the overall improvement of the psychological well-being, 6.9% (14 of 202) of the participants experienced an adverse event during the first 2 years after predictive testing that was clinically significant. The frequency of all defined adverse events in the participants was 21.8%, with higher frequency in the increased risk group (p = 0.03) and most occurring within 12 months of receiving results.


Subject(s)
Genetic Counseling , Genetic Testing/psychology , Huntington Disease/diagnosis , Stress, Psychological/psychology , Adult , Analysis of Variance , Behavioral Symptoms/psychology , Cohort Studies , Demography , Female , Humans , Male , Predictive Value of Tests , Prospective Studies , Psychological Tests , Time Factors
9.
Am J Med Genet A ; 119A(3): 279-82, 2003 Jun 15.
Article in English | MEDLINE | ID: mdl-12784292

ABSTRACT

Huntington disease (HD) is a neurodegenerative disorder caused by the abnormal expansion of CAG repeats in the HD gene on chromosome 4p16.3. Past studies have shown that the size of expanded CAG repeat is inversely associated with age at onset (AO) of HD. It is not known whether the normal Huntington allele size influences the relation between the expanded repeat and AO of HD. Data collected from two independent cohorts were used to test the hypothesis that the unexpanded CAG repeat interacts with the expanded CAG repeat to influence AO of HD. In the New England Huntington Disease Center Without Walls (NEHD) cohort of 221 HD affected persons and in the HD-MAPS cohort of 533 HD affected persons, we found evidence supporting an interaction between the expanded and unexpanded CAG repeat sizes which influences AO of HD (P = 0.08 and 0.07, respectively). The association was statistically significant when both cohorts were combined (P = 0.012). The estimated heritability of the AO residual was 0.56 after adjustment for normal and expanded repeats and their interaction. An analysis of tertiles of repeats sizes revealed that the effect of the normal allele is seen among persons with large HD repeat sizes (47-83). These findings suggest that an increase in the size of the normal repeat may mitigate the expression of the disease among HD affected persons with large expanded CAG repeats.


Subject(s)
Huntington Disease/genetics , Trinucleotide Repeats , Adolescent , Adult , Age of Onset , Aged , Aged, 80 and over , Child , Child, Preschool , Cohort Studies , Humans , Middle Aged , New England , Probability , Survival Rate
10.
Neurology ; 57(4): 658-62, 2001 Aug 28.
Article in English | MEDLINE | ID: mdl-11524475

ABSTRACT

OBJECTIVE: There is increasing evidence that neuron loss precedes the phenotypic expression of Huntington's disease (HD). As genes for late-onset neurodegenerative diseases are identified, the need for accurate assessment of phenoconversion (i.e., the transition from health to the disease phenotype) will be important. METHODS: Prospective longitudinal evaluation using the Unified Huntington's Disease Rating Scale (UHDRS) was conducted by Huntington Study Group members from 36 sites. There were 260 persons considered "at risk" for HD who initially did not have manifest disease and had at least one subsequent evaluation. Repeat UHDRS data, obtained an average of 2 years later, showed that 70 persons were given a diagnosis of definite HD based on the quantified neurologic examination. RESULTS: Baseline cognitive performances were consistently worse for the at-risk group who demonstrated conversion to a definitive diagnosis compared with those who did not. Longitudinal change scores showed that the at-risk group who did not demonstrate manifest disease during the follow-up study period demonstrated improvements in all cognitive tests, whereas performances in the at-risk group demonstrating conversion to disease during the study declined across cognitive domains. CONCLUSIONS: Neuropsychological measures show impairment 2 years before the development of more manifest motor disease. Findings suggest that these brief cognitive measures administered over time may capture early striatal neural loss in HD.


Subject(s)
Cognition Disorders/psychology , Huntington Disease/psychology , Neuropsychological Tests , Adult , Cognition Disorders/diagnosis , Female , Humans , Huntington Disease/diagnosis , Male , Middle Aged , Prospective Studies
11.
Am J Med Genet ; 105(5): 399-403, 2001 Jul 08.
Article in English | MEDLINE | ID: mdl-11449389

ABSTRACT

In order to provide data relevant to a search for modifying genes for age of onset in Huntington disease, we examined the relationship between CAG number and age of onset in a total of 370 individuals from 165 siblingships, in two cohorts of siblings with Huntington disease: an American group of 144 individuals from 64 siblingships, and a Canadian population of 255 individuals from 113 siblingships. Using a logarithmic model to regress the age of onset on the number of CAG triplets, we found that CAG number alone accounted for 65%-71% of the variance in age of onset. The siblingship an individual belonged to accounted for 11%-19% of additional variance. This adds to the previous evidence that there are familial modifiers of the age of onset, independent of the CAG number. Such modifiers may consist of additional genes, which could be the target of a linkage study. A linkage study is feasible with the cooperation of a number of major centers and may be made more efficient by concentrating on sibling pairs that are highly discordant for age of onset.


Subject(s)
Huntington Disease/genetics , Age of Onset , Cohort Studies , DNA/genetics , Family Health , Female , Humans , Huntington Disease/pathology , Male , Trinucleotide Repeats/genetics
12.
Appl Environ Microbiol ; 66(2): 535-42, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10653715

ABSTRACT

Viridans group streptococci are major constituents of the normal human oral flora and are also identified as the predominant pathogenic bacteria in native valve infective endocarditis. Little information is available regarding the regulation of gene expression in viridans group streptococci, either in response to changes in the oral environment or during development of endocarditis. We therefore constructed a set of broad-host-range vectors for the isolation of promoters from viridans group streptococci that are activated by specific environmental stimuli in vitro or in vivo. A genomic library of Streptococcus gordonii strain CH1 was constructed in one of the new vectors, and this library was introduced into a homologous bacterium by using an optimized electroporation protocol for viridans group streptococci. Because viridans group streptococci entering the bloodstream from the oral cavity encounter an increase in pH, we selected promoters upregulated by this specific stimulus. One of the selected promoter sequences showed homology to the promoter region of the hydA gene from Clostridium acetobutylicum, the expression of which is known to be regulated by the environmental pH. The isolation of this pH-regulated promoter shows that S. gordonii can sense an increase in the environmental pH, which serves as a signal for bacterial gene activation. Furthermore, this demonstrates the usefulness of these new selection vectors in research on adaptive gene expression of viridans group streptococci and possibly also of other gram-positive bacteria.


Subject(s)
Gene Expression Regulation, Bacterial , Promoter Regions, Genetic , Streptococcus/genetics , Base Sequence , Electroporation , Genetic Vectors/genetics , Humans , Hydrogen-Ion Concentration , Molecular Sequence Data , Plasmids/genetics , Promoter Regions, Genetic/genetics , Sequence Analysis, DNA , Streptococcus/growth & development , Streptococcus/metabolism , Transcriptional Activation , Transformation, Bacterial , beta-Galactosidase/metabolism
13.
Am J Hum Genet ; 64(5): 1293-304, 1999 May.
Article in English | MEDLINE | ID: mdl-10205260

ABSTRACT

Prior to the implementation of predictive-testing programs for Huntington disease (HD), significant concern was raised concerning the likelihood of catastrophic events (CEs), particularly in those persons receiving an increased-risk result. We have investigated the frequency of CEs-that is, suicide, suicide attempt, and psychiatric hospitalization-after an HD predictive-testing result, through questionnaires sent to predictive-testing centers worldwide. A total of 44 persons (0.97%) in a cohort of 4,527 test participants had a CE: 5 successful suicides, 21 suicide attempts, and 18 hospitalizations for psychiatric reasons. All persons committing suicide had signs of HD, whereas 11 (52.4%) of 21 persons attempting suicide and 8 (44.4%) of 18 who had a psychiatric hospitalization were symptomatic. A total of 11 (84.6%) of 13 asymptomatic persons who experienced a CE during the first year after HD predictive testing received an increased-risk result. Factors associated with an increased risk of a CE included (a) a psychiatric history

Subject(s)
Genetic Testing/psychology , Global Health , Hospitalization/statistics & numerical data , Huntington Disease/psychology , Mental Disorders/epidemiology , Suicide/statistics & numerical data , Cohort Studies , Humans , Huntington Disease/diagnosis , Huntington Disease/genetics , Mental Disorders/genetics , Suicide, Attempted/statistics & numerical data
14.
Genomics ; 55(1): 106-12, 1999 Jan 01.
Article in English | MEDLINE | ID: mdl-9889004

ABSTRACT

The autosomal recessive form of juvenile amyotrophic lateral sclerosis (ALS2; RFALS Type 3) has previously been mapped to the 8-cM interval flanked by D2S115 and D2S155 on human chromosome 2q33-q34. We have established a yeast artificial chromosome (YAC) contig spanning an approximately 8-Mb region of the ALS2 candidate region and mapped 52 transcribed DNA sequences including 13 known genes and 39 expressed sequenced tags within this YAC contig. The establishment of a YAC contig and transcript map that spans the region containing the ALS2 mutation is an essential step in the identification of the ALS2 gene.


Subject(s)
Amyotrophic Lateral Sclerosis/genetics , Chromosomes, Human, Pair 2 , Contig Mapping , Chromosomes, Artificial, Yeast , Humans
15.
Nucleic Acids Res ; 25(15): 2960-6, 1997 Aug 01.
Article in English | MEDLINE | ID: mdl-9224593

ABSTRACT

Representation of subcloned Caenorhabditis elegans and human DNA sequences in both M13 and pUC sequencing vectors was determined in the context of large scale genomic sequencing. In many cases, regions of subclone under-representation correlated with the occurrence of repeat sequences, and in some cases the under-representation was orientation specific. Factors which affected subclone representation included the nature and complexity of the repeat sequence, as well as the length of the repeat region. In some but not all cases, notable differences between the M13 and pUC subclone distributions existed. However, in all regions lacking one type of subclone (either M13 or pUC), an alternate subclone was identified in at least one orientation. This suggests that complementary use of M13 and pUC subclones would provide the most comprehensive subclone coverage of a given genomic sequence.


Subject(s)
Cloning, Molecular , Genetic Vectors , Animals , Base Sequence , Binding Sites , Caenorhabditis elegans/genetics , Cosmids , Genome , Humans
16.
Brain Pathol ; 7(3): 979-1002, 1997 Jul.
Article in English | MEDLINE | ID: mdl-9217979

ABSTRACT

Huntington's Disease (HD) is caused by expansion of a CAG trinucleotide beyond 35 repeats within the coding region of a novel gene. Recently, new insights into the relationship between CAG expansion in the HD gene and pathological mechanisms have emerged. Survival analysis of a large cohort of affected and at-risk individuals with CAG sizes between 39 and 50 repeats have yielded probability curves of developing HD symptoms and dying of HD by a certain age. Animals transgenic for the first exon of huntingtin with large CAG repeats lengths have been reported to have a complex neurological phenotype that bears interesting similarities and differences to HD. The repertoire of huntingtin-interacting proteins continues to expand with the identification of HIP1, a protein whose yeast homologues have known functions in regulating events associated with the cytoskeleton. The ability of huntingtin to interact with two of its four known protein partners appears to be influenced by CAG length. Caspase 3 (apopain), a key cysteine protease known to play a seminal role in neural apoptosis, has also been demonstrated to specifically cleave huntingtin in a CAG length-dependent manner. Many of these features are combined in a model suggesting mechanisms by which the pathogenesis of HD may be initiated. The development of appropriate in vitro and animal models for HD will allow the validity of these models to be tested.


Subject(s)
Carbon-Oxygen Lyases , DNA-(Apurinic or Apyrimidinic Site) Lyase , Huntington Disease/genetics , Peptides/genetics , Trinucleotide Repeats , Age of Onset , DNA-Binding Proteins/genetics , Humans , Huntington Disease/pathology , Nerve Tissue Proteins/genetics , Nuclear Proteins/genetics , Phenotype
17.
Am J Hum Genet ; 60(5): 1202-10, 1997 May.
Article in English | MEDLINE | ID: mdl-9150168

ABSTRACT

Prior studies describing the relationship between CAG size and the age at onset of Huntington disease (HD) have focused on affected persons. To further define the relationship between CAG repeat size and age at onset of HD, we now have analyzed a large cohort of affected and asymptomatic at-risk persons with CAG expansion. This cohort numbered 1,049 persons, including 321 at-risk and 728 affected individuals with a CAG size of 29-121 repeats. Kaplan-Meier analysis has provided curves for determining the likelihood of onset at a given age, for each CAG repeat length in the 39-50 range. The curves were significantly different (P < .0005), with relatively narrow 95% confidence intervals (95% CI) (+/-10%). Penetrance of the mutation for HD also was examined. Although complete penetrance of HD was observed for CAG sizes of > or = 42, only a proportion of those with a CAG repeat length of 36-41 showed signs or symptoms of HD within a normal life span. These data provide information concerning the likelihood of being affected, by a specific age, with a particular CAG size, and they may be useful in predictive-testing programs and for the design of clinical trials for persons at increased risk for HD.


Subject(s)
Huntington Disease/etiology , Trinucleotide Repeats , Adolescent , Adult , Age of Onset , Aged , Aged, 80 and over , Cohort Studies , Humans , Middle Aged , Probability , Survival Analysis
19.
Nucleic Acids Res ; 23(4): 670-4, 1995 Feb 25.
Article in English | MEDLINE | ID: mdl-7899089

ABSTRACT

Yeast artificial chromosomes (YACs) provide a powerful way to isolate and map large regions of genomic DNA and their use in genome analysis is now extensive. We modified a series of procedures to produce high quality shotgun libraries from small amounts of YAC DNA. Clones from several different libraries have been sequenced and analyzed for distribution, sequence integrity and degree of contamination from yeast DNA. We describe these procedures and analyses and show that sequencing at about 1-fold coverage, followed by database comparison (survey sequencing) offers a relatively quick method to determine the nature of previously uncharacterized cosmid or YAC clones.


Subject(s)
Bacteriophage M13/genetics , Chromosomes, Artificial, Yeast/genetics , Cloning, Molecular/methods , DNA, Fungal/genetics , DNA, Recombinant/genetics , Gene Library , Genetic Vectors/genetics , DNA, Recombinant/isolation & purification , Electrophoresis, Gel, Pulsed-Field , Escherichia coli/genetics , Saccharomyces cerevisiae/genetics , Sequence Analysis, DNA
20.
Science ; 265(5181): 2077-82, 1994 Sep 30.
Article in English | MEDLINE | ID: mdl-8091229

ABSTRACT

The complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII reveals that it contains 269 predicted or known genes (300 base pairs or larger). Fifty-nine of these genes (22 percent) were previously identified. Of the 210 novel genes, 65 are predicted to encode proteins that are similar to other proteins of known or predicted function. Sixteen genes appear to be relatively recently duplicated. On average, there is one gene approximately every 2 kilobases. Although the coding density and base composition across the chromosome are not uniform, no regular pattern of variation is apparent.


Subject(s)
Chromosomes, Fungal , Genes, Fungal , Saccharomyces cerevisiae/genetics , Base Composition , Base Sequence , Chromosome Mapping , DNA, Fungal/genetics , Introns , Multigene Family , Open Reading Frames , RNA, Fungal/genetics , RNA, Transfer/genetics
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