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1.
Anim Health Res Rev ; 23(2): 165-193, 2022 12.
Article in English | MEDLINE | ID: mdl-36688278

ABSTRACT

Dietary fiber (DF) is receiving increasing attention, and its importance in pig nutrition is now acknowledged. Although DF for pigs was frowned upon for a long time because of reductions in energy intake and digestibility of other nutrients, it has become clear that feeding DF to pigs can affect their well-being and health. This review aims to summarize the state of knowledge of studies on DF in pigs, with an emphasis on the underlying mode of action, by considering research using DF in sows as well as suckling and weaned piglets, and fattening pigs. These studies indicate that DF can benefit the digestive tracts and the health of pigs, if certain conditions or restrictions are considered, such as concentration in the feed and fermentability. Besides the chemical composition and the impact on energy and nutrient digestibility, it is also necessary to evaluate the possible physical and physiologic effects on intestinal function and intestinal microbiota, to better understand the relation of DF to animal health and welfare. Future research should be designed to provide a better mechanistic understanding of the physiologic effects of DF in pigs.


Subject(s)
Dietary Fiber , Gastrointestinal Microbiome , Swine , Animals , Female , Dietary Fiber/analysis , Gastrointestinal Microbiome/physiology , Animal Feed/analysis , Diet/veterinary
2.
Poult Sci ; 99(10): 5018-5026, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32988538

ABSTRACT

Lignocellulose is a constituent of plant cell walls and might be used as a fiber source in poultry nutrition. The current study investigated the impact of increasing dietary levels of lignocellulose on performance, nutrient digestibility, excreta DM, intestinal microbiota, and bacterial metabolites in slow growing broilers. At an age of 10 wk, 60 male broilers of an intercross line (New Hampshire × White Leghorn) were allocated to cages and fed isoenergetic and isonitrogenous diets containing 0.8% (LC1), 5% (LC2), or 10% (LC3) lignocellulose. After 23 D of feeding, broilers were killed and digesta samples of ileum and excreta analyzed for nutrient digestibility and DM. Cecal contents were analyzed for microbial composition and metabolites. Broiler performance was not affected by feeding dietary lignocellulose. LC3 fed broilers showed reduced ileal digestibility of protein compared to chickens fed LC1 (P = 0.003). Moreover, increasing levels of dietary lignocellulose reduced apparent digestibility of organic matter and gross energy (P < 0.001). Feeding of lignocellulose had no impact on the excreta DM of broilers. Increasing levels of dietary lignocellulose lowered cecal counts of Escherichia/Hafnia/Shigella (P = 0.029) and reduced the total concentration of short-chain fatty acids (P < 0.001), lactate (P < 0.05), and ammonia (P = 0.009). The molar ratio of cecal acetic acid was higher in LC3 fed broilers (P < 0.001), while the proportions of cecal propionic acid and n-butyric acid were higher in LC1 and LC2 fed chickens (P < 0.001). Correlation analyses indicated that dietary lignocellulose was negatively related to the total concentration of cecal bacterial metabolites (P < 0.001). In conclusion, the feeding of lignocellulose did not affect growth performance, but impaired nutrient digestibility of slow growing broilers. While minor changes in cecal microbial composition were detected, cecal bacterial metabolite concentrations were significantly reduced with increasing levels of dietary lignocellulose. These findings suggest that lignocellulose is not extensively degraded by bacteria residing in the large intestine of broilers.


Subject(s)
Animal Nutritional Physiological Phenomena , Chickens , Dietary Supplements , Digestion , Gastrointestinal Microbiome , Animal Feed/analysis , Animal Nutritional Physiological Phenomena/drug effects , Animals , Chickens/growth & development , Chickens/microbiology , Diet/veterinary , Dietary Supplements/analysis , Digestion/drug effects , Gastrointestinal Microbiome/drug effects , Lignin/pharmacology , Male , Nutrients/metabolism
3.
Anim Genet ; 51(3): 391-408, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32100321

ABSTRACT

The aim of this study was to detect selection signatures considering cows from the German Holstein (GH) and the local dual-purpose black and white (DSN) population, as well as from generated sub-populations. The 4654 GH and 261 DSN cows were genotyped with the BovineSNP50 Genotyping BeadChip. The geographical herd location was used as an environmental descriptor to create the East-DSN and West-DSN sub-populations. In addition, two further sub-populations of GH cows were generated, using the extreme values for solutions of residual effects of cows for the claw disorder dermatitis digitalis. These groups represented the most susceptible and most resistant cows. We used cross-population extended haplotype homozygosity methodology (XP-EHH) to identify the most recent selection signatures. Furthermore, we calculated Wright's fixation index (FST ). Chromosomal segments for the top 0.1 percentile of negative or positive XP-EHH scores were studied in detail. For gene annotations, we used the Ensembl database and we considered a window of 250 kbp downstream and upstream of each core SNP corresponding to peaks of XP-EHH. In addition, functional interactions among potential candidate genes were inferred via gene network analyses. The most outstanding XP-EHH score was on chromosome 12 (at 77.34 Mb) for DSN and on chromosome 20 (at 36.29-38.42 Mb) for GH. Selection signature locations harbored QTL for several economically important milk and meat quality traits, reflecting the different breeding goals for GH and DSN. The average FST value between GH and DSN was quite low (0.068), indicating shared founders. For group stratifications according to cow health, several identified potential candidate genes influence disease resistance, especially to dermatitis digitalis.


Subject(s)
Breeding , Cattle/genetics , Genetic Variation , Selection, Genetic , Animals , Female , Genotype , Molecular Sequence Annotation , Polymorphism, Single Nucleotide
4.
Anim Genet ; 49(5): 478-482, 2018 Oct.
Article in English | MEDLINE | ID: mdl-30062755

ABSTRACT

Long-term selection of goats for a certain production system and/or different environmental conditions will be reflected in the body morphology of the animals under selection. To investigate the variation contributing to different morphological traits and to identify genomic regions that are associated with body morphological traits in Sudanese goats, we genotyped 96 females belonging to four Sudanese goat breeds with the SNP52 BeadChip. After quality control of the data, the genome-wide association study was performed using 95 goats and 24 027 informative single nucleotide polymorphisms (SNPs). Bicoastal diameter was significantly associated (LOD = 6.32) with snp10185-scaffold1365-620922 on chromosome 2. The minor allele has an additive effect, increasing the bicoastal diameter by 2.6 cm. A second significant association was found between body length and snp56482-scaffold89-467312 on chromosome 3 (LOD = 5.65). The minor allele is associated with increased body length. Additionally, five regions were suggestive for cannon bone, head width, rump length and withers height (LOD > 5). Only one gene (CNTNAP5) is located within the 1-Mb region surrounding the significant SNP for bicoastal diameter on chromosome 2. The body length QTL on chromosome 3 harbors 49 genes. Further research is required to validate the observed associations and to prioritize candidate genes.


Subject(s)
Genome-Wide Association Study , Goats/anatomy & histology , Goats/genetics , Polymorphism, Single Nucleotide , Animals , Body Height , Body Size , Goats/classification , Humans
5.
Anim Genet ; 49(5): 467-471, 2018 Oct.
Article in English | MEDLINE | ID: mdl-30058133

ABSTRACT

In our previous research, we identified a QTL with an interval of 3.4 Mb for growth on chicken chromosome (GGA) 4 in an advanced intercross population of an initial cross between the New Hampshire inbred line (NHI) and the White Leghorn inbred line (WL77). In the current study, an association analysis was performed in a population of purebred white layers (WLA) with White Leghorn origin. Genotypic data of 130 SNPs within the previously identified 3.4-Mb region were obtained using a 60K SNP chip. In total, 24 significant SNPs (LOD ≥ 4.44) on GGA4 were detected for daily weigh gain from 8 to 14 weeks and two SNPs (LOD ≥ 4.80) for body weight at 14 weeks. The QTL interval was reduced by 1.9 Mb to an interval of 1.5 Mb (74.6-76.1 Mb) that harbors 15 genes. Furthermore, to identify additional loci for chicken growth, a genome-wide association study (GWAS) was carried out in a WLA population. The GWAS identified an additional QTL on GGA6 for body weight at six weeks (19.8-21.2 Mb). Our findings showed that by using a WLA population we were able to further reduce the QTL confidence interval previously detected using a NHI × WL77 advanced intercross population.


Subject(s)
Chickens/growth & development , Chickens/genetics , Quantitative Trait Loci , Animals , Chickens/classification , Chromosomes , Genome-Wide Association Study , Polymorphism, Single Nucleotide
6.
Anim Genet ; 49(1): 82-85, 2018 Feb.
Article in English | MEDLINE | ID: mdl-29314139

ABSTRACT

A validation study for six genomic regions previously identified by a genome-wide association study for somatic cell score was conducted with data of clinical mastitis in German Holstein cattle. Out of 10 tested SNPs, five on chromosomes 6, 13 and 19 were significantly associated with clinical mastitis (P < 0.05). Three SNPs on chromosomes 6 and 19 had the same direction of effect as those previously reported in the initial genome-wide association study for somatic cell score. The other two SNPs on chromosome 13 had opposite effects. As well as validating associations within known QTL from previous studies, e.g. chromosomes 6 and 19, novel loci on chromosome 13 were confirmed. Promising candidate genes are, for example: deoxycytidine kinase, immunoglobulin J chain, vitamin D binding protein, forkhead box K2, sodium/hydrogen exchanger 8 and cytoplasmic nuclear factor of activated T-cells 2. Our confirmation study provides additional evidence for the functional role of the linked genomic regions to immune response. This information can be used as a basis for further functional studies for those potential genes.


Subject(s)
Genome-Wide Association Study/veterinary , Mastitis, Bovine/genetics , Polymorphism, Single Nucleotide , Animals , Cattle , Chromosomes, Mammalian , Female
7.
Anim Genet ; 48(4): 486-489, 2017 Aug.
Article in English | MEDLINE | ID: mdl-28568646

ABSTRACT

Although Arabian horses have been bred in strains for centuries and pedigrees have been recorded in studbooks, to date, little is known about the genetic diversity within and between these strains. In this study, we tested if the three main strains of Syrian Arabian horses descend from three founders as suggested by the studbook. We examined 48 horses representing Saglawi (n = 18), Kahlawi (n = 16) and Hamdani (n = 14) strains using the Equine SNP70K BeadChip. For comparison, an additional 24 Arabian horses from the USA and three Przewalski's horses as an out group were added. Observed heterozygosis (Ho ) ranged between 0.30 and 0.32, expected heterozygosity (He ) between 0.30 and 0.31 and inbreeding coefficients (Fis ) between -0.02 and -0.05, indicating high genetic diversity within Syrian strains. Likewise, the genetic differentiation between the three Syrian strains was very low (Fst  < 0.05). Hierarchical clustering showed a clear distinction between Arabian and Przewalski's horses. Among Arabian horses, we found three clusters containing either horses from the USA or horses from Syria or horses from Syria and the USA together. Individuals from the same Syrian Arabian horse strain were spread across different sub-clusters. When analyzing Syrian Arabian horses alone, the best population differentiation was found with three distinct clusters. In contrast to expectations from the studbook, these clusters did not coincide with strain affiliation. Although this finding supports the hypothesis of three founders, the genetic information is not consistent with the currently used strain designation system. The information can be used to reconsider the current breeding practice. Beyond that, Syrian Arabian horses are an important reservoir for genetic diversity.


Subject(s)
Genetic Variation , Genetics, Population , Horses/genetics , Animals , Breeding , Cluster Analysis , Female , Heterozygote , Male , Models, Genetic , Phenotype , Polymorphism, Single Nucleotide , Syria
8.
Anim Genet ; 48(3): 295-302, 2017 Jun.
Article in English | MEDLINE | ID: mdl-28124378

ABSTRACT

In our previous research, QTL analysis in an F2 cross between the inbred New Hampshire (NHI) and White Leghorn (WL77) lines revealed a growth QTL in the distal part of chromosome 4. To physically reduce the chromosomal interval and the number of potential candidate genes, we performed fine mapping using individuals of generations F10 , F11 and F12 in an advanced intercross line that had been established from the initial F2 mapping population. Using nine single nucleotide polymorphism (SNP) markers within the QTL region for an association analysis with several growth traits from hatch to 20 weeks and body composition traits at 20 weeks, we could reduce the confidence interval from 26.9 to 3.4 Mb. Within the fine mapped region, markers rs14490774, rs314961352 and rs318175270 were in full linkage disequilibrium (D' = 1.0) and showed the strongest effect on growth and muscle mass (LOD ≥ 4.00). This reduced region contains 30 genes, compared to 292 genes in the original region. Chicken 60 K and 600 K SNP chips combined with DNA sequencing of the parental lines were used to call mutations in the reduced region. In the narrowed-down region, 489 sequence variants were detected between NHI and WL77. The most deleterious variants are a missense variant in ADGRA3 (SIFT = 0.02) and a frameshift deletion in the functional unknown gene ENSGALG00000014401 in NHI chicken. In addition, five synonymous variants were discovered in genes PPARGC1A, ADGRA3, PACRGL, SLIT2 and FAM184B. In our study, the confidence interval and the number of potential genes could be reduced 8- and 10- fold respectively. Further research will focus on functional effects of mutant genes.


Subject(s)
Chickens/genetics , Muscle, Skeletal/growth & development , Quantitative Trait Loci , Animals , Body Composition/genetics , Body Weight/genetics , Chickens/growth & development , Chromosome Mapping , Crosses, Genetic , Genetic Markers , Genotype , Linkage Disequilibrium , Polymorphism, Single Nucleotide , Sequence Analysis, DNA
9.
J Appl Genet ; 58(2): 273-276, 2017 May.
Article in English | MEDLINE | ID: mdl-27966062

ABSTRACT

Arabian horse registries classify Arabian horses based on their dam lineages into five main strains. To test the maternal origin of Syrian Arabian horses, 192 horses representing the three major strains Saglawi, Kahlawi, and Hamdani were sequenced for 353 bp of their mitochondrial displacement loop (D-loop) region. Sequencing revealed 28 haplotypes comprising 38 sequence variations. The haplotype diversity values were 0.95, 0.91, and 0.90 in Kahlawi, Hamdani, and Saglawi strains, respectively. The pair-wise population differentiation estimates (Fst) between strains were low, ranging between 0.098 and 0.205. The haplotype diversity and the pair-wise population differentiation estimates (Fst) between strains showed high diversity within individuals of each strain and low variation between the three strains. Mitochondrial haplotypes scattered all over the neighbor-joining tree without clear separation of the three strains. In the median-joining network, the Syrian horses were grouped into seven major haplogroups. These results suggest that more than five ancestors exist that share common maternal haplotypes with other horse breeds.


Subject(s)
Breeding , DNA, Mitochondrial/genetics , Genetic Variation , Horses/genetics , Animals , Genetics, Population , Haplotypes , Sequence Analysis, DNA/veterinary , Syria
10.
J Appl Genet ; 58(2): 261-271, 2017 May.
Article in English | MEDLINE | ID: mdl-27924448

ABSTRACT

Butana is a Bos indicus dairy cattle breed that is well adapted to the local environment of Sudan. The breed has been gradually declining in number due to breed substitution. Therefore, conservation and improvement strategies are required to maintain this breed. The aim of the present study was to assess genetic variation that is characteristic for Butana cattle in the milk protein genes CSN1S1, CSN2, CSN1S2, CSN3, LALBA, and LGB. In a first step, genomic DNA of five unrelated individuals was comparatively sequenced across all exon and flanking sequences. Ninety-three single nucleotide polymorphisms (SNPs) were identified in Butana cattle compared with the Bos taurus reference sequence at Ensembl. We confirmed the recently identified protein variants CSN2*J, CSN2*L, and LALBA*E. Fifty-two SNPs in non-coding regions are novel. Among the novel SNPs, five are located in promoter regions, three of them are in putative transcription factor binding sites (TFBSs) of the CSN1S2 promoter. Fifteen SNPs potentially affect miRNA target sites. In a second step, 50 unrelated Butana cattle were genotyped. This allowed deriving haplotypes for the casein gene cluster on BTA6. The most frequent haplotype was CSN1S1*C-CSN2*A 2 -CSN1S2*A-CSN3*A (C-A 2 -A-A, frequency 0.1546). Considering the newly identified CSN1S2 promoter variants, the most frequent haplotype was C-A 2 -TTC-A-A (0.1046), with TTC as the promoter variant. The information on protein and promoter variants can be used for the development of conservation and breeding strategies for this local breed.


Subject(s)
Caseins/genetics , Cattle/genetics , Haplotypes , Milk Proteins/genetics , Animals , Breeding , Female , Genotype , Polymorphism, Single Nucleotide , Promoter Regions, Genetic , Sequence Analysis, DNA/veterinary , Sudan , Untranslated Regions
11.
Int J Obes (Lond) ; 40(12): 1850-1855, 2016 12.
Article in English | MEDLINE | ID: mdl-27698343

ABSTRACT

BACKGROUND/OBJECTIVE: Consumption of green tea has become increasingly popular, particularly because of claimed reduction in body weight. We recently reported that animals with pharmacological inhibition (by candoxatril) or genetic absence of the endopeptidase neprilysin (NEP) develop an obese phenotype. We now investigated the effect of green tea extract (in drinking water) on body weight and body composition and the mediating role of NEP. SUBJECTS/METHODS: To elucidate the role of NEP in mediating the beneficial effects of green tea extract, 'Berlin fat mice' or NEP-deficient mice and their age- and gender-matched wild-type controls received the extract in two different doses (300 or 600 mg kg-1 body weight per day) in the drinking water. RESULTS: In 'Berlin fat mice', 51 days of green tea treatment did not only prevent fat accumulation (control: day 0: 30.5% fat, day 51: 33.1%; NS) but also reduced significant body fat (green tea: day 0: 27.8%, day 51: 20.9%, P<0.01) and body weight below the initial levels. Green tea reduced food intake. This was paralleled by a selective increase in peripheral (in kidney 17%, in intestine 92%), but not central NEP expression and activity, leading to downregulation of orexigens (like galanin and neuropeptide Y (NPY)) known to be physiological substrates of NEP. Consequently, in NEP-knockout mice, green tea extract failed to reduce body fat/weight. CONCLUSIONS: Our data generate experimental proof for the assumed effects of green tea on body weight and the key role for NEP in such process, and thus open a new avenue for the treatment of obesity.


Subject(s)
Adipose Tissue/drug effects , Adipose Tissue/metabolism , Neprilysin/biosynthesis , Plant Extracts/pharmacology , Tea , Animals , Disease Models, Animal , Energy Metabolism/drug effects , Energy Metabolism/physiology , Mice , Mice, Knockout , Neprilysin/deficiency , Obesity/metabolism , Obesity/pathology , Obesity/prevention & control , Thermogenesis/drug effects , Thermogenesis/physiology , Up-Regulation/drug effects
12.
Int J Obes (Lond) ; 40(11): 1784-1788, 2016 11.
Article in English | MEDLINE | ID: mdl-27538457

ABSTRACT

BACKGROUND/OBJECTIVES: The Berlin Fat Mouse Inbred line 860 is a model for juvenile obesity. Previously, a recessive major effect locus (jObes1) on chromosome 3 between 34 and 44 Mb has been found to be responsible for 39% of the variance of total fat mass at 10 weeks in a (BFMI860 x C57BL/6NCrl) F2 population. The aim of this study was fine mapping of the jObes1 locus. SUBJECTS/METHODS: An advanced intercross line (AIL) was generated from the initial F2 mapping population. Three hundred and forty-four male mice of generation 28 were excessively phenotyped and genotyped using the MegaMuga mouse chip containing 22 164 informative single-nucleotide polymorphisms. Expression of candidate genes was investigated in gonadal adipose tissue, liver and whole brain from mice of different genotype classes. Classical genetic complementation tests were performed to test candidate genes. RESULTS: The high mapping resolution of the AIL reduced the confidence interval for jObes1 from 10 to 0.37 Mb between 36.48 and 36.85 Mb. This region was highly significantly (logarithm (base 10) of odds (LOD) score after Benjamini and Hochberg correction (LOD(BH))>50) associated with total fat mass starting at puberty (6 weeks). Male homozygous carriers of the jObese1 BFMI allele had 3 g more fat than the other genotypes. Surprisingly, this genotype class showed lower body mass until weaning at 3 weeks (LOD(BH)=3.2). The mapped interval contains four genes. Bbs7, the most likely candidate gene that also caused obesity in the complementation test was differentially expressed in all tissues examined, whereas the neighboring cyclin A2 (Ccna2) gene showed differential expression in gonadal adipose tissue. CONCLUSIONS: Using an AIL, the confidence interval for jObes1 could be 27-fold reduced by finding chromosomal recombinations. Although Bbs7 is the most likely obesity gene in the jObes1 region, neighboring genes cannot be entirely excluded. Further examinations are needed to enlighten the mechanism leading to physiological consequences on body mass and fat mass in juvenile animals.


Subject(s)
Crosses, Genetic , Pediatric Obesity/genetics , Quantitative Trait Loci/genetics , Adaptor Proteins, Signal Transducing , Animals , Chromosome Mapping , Cytoskeletal Proteins , Disease Models, Animal , Female , Gene Expression Profiling , Male , Mice , Mice, Obese , Molecular Chaperones/genetics
13.
Exp Clin Endocrinol Diabetes ; 124(9): 519-528, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27437914

ABSTRACT

Obesity is one of several risk factors for insulin resistance and type 2 diabetes. Here we examined males of 6 obese mouse inbred lines derived from the Berlin Fat Mouse (BFM) outbred population with respect to insulin sensitivity and factors of the metabolic syndrome with focus on the skeletal muscle as a major target of insulin dependent glucose uptake.Males were kept on a rodent standard diet and several approaches were carried out to address insulin sensitivity, adiposity and lipids in the serum. Transcript and protein levels of several genes in the insulin signalling pathway were measured. 2 of the lines, BFMI860-12 and in particular BFMI861-S1, showed a markedly reduced insulin sensitivity already at the age of 20 weeks. BFMI861-S1 mice also displayed elevated liver triglyceride levels as a sign of lipid overload and ectopic fat storage. The analysis of the insulin signalling pathway in skeletal muscle provided evidence for low insulin receptor (INSR) and normal glucose 4 transporter (GLUT4) protein amounts in BFMI861-S1 mice, while BFMI860-12 mice showed increased INSR and very low GLUT4 protein amounts. Interestingly, the sublines BFMI860-S2 and BFMI861-S2, which are highly related to the former 2 lines, respectively, were inconspicuously insulin sensitive. The expected few genetic differences among the BFMI lines facilitate the identification of causal genetic variation. This study identified 2 mouse lines with different impairments of insulin signalling. These lines resemble useful models for studying mechanisms leading to the pathophysiology of the metabolic syndrome, in particular insulin resistance.


Subject(s)
Gene Expression Profiling , Insulin Resistance , Metabolic Syndrome/metabolism , Mice, Inbred Strains/metabolism , Animals , Disease Models, Animal , Insulin Resistance/genetics , Male , Mice
14.
Anim Genet ; 46(4): 441-6, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25908024

ABSTRACT

Reciprocal crosses between the inbred lines New Hampshire (NHI) and White Leghorn (WL77) comprising 579 F2 individuals were used to map QTL for body weight and composition. Here, we examine the growth performance until 20 weeks of age. Linkage analysis provided evidence for highly significant QTL on GGA1, 2, 4, 10 and 27 which had specific effects on early or late growth. The highest QTL effects, accounting for 4.6-25.6% of the phenotypic F2 variance, were found on the distal region of GGA4 between 142 and 170 cM (F ≥ 13.68). The NHI QTL allele increased body mass by 141.86 g at 20 weeks. Using body weight as a covariate in the analysis of body composition traits provided evidence for genes in the GGA4 QTL region affecting fat mass independently of body mass. The QTL effect size differed between sexes and depended on the direction of cross. TBC1D1, CCKAR and PPARGC1A are functional candidate genes in the QTL peak region. Our study confirmed the importance of the distal GGA4 region for chicken growth performance. The strong effect of the GGA4 QTL makes fine mapping and gene discovery feasible.


Subject(s)
Body Weight/genetics , Chickens/genetics , Genetic Linkage , Quantitative Trait Loci , Alleles , Animals , Body Composition/genetics , Breeding , Chromosome Mapping , Crosses, Genetic , Female , Male , Phenotype
15.
J Anim Sci ; 92(5): 1939-44, 2014 May.
Article in English | MEDLINE | ID: mdl-24671582

ABSTRACT

We present results from a genomewide association study (GWAS) and a single-marker association study. The GWAS was performed with the Illumina PorcineSNP60 BeadChip from which 5 markers were selected for a validation analysis. Genetic effects were estimated for feed intake, weight gain, and traits of fat and muscle tissue in German Landrace boars kept on performance test stations. The GWAS was performed in a population of 288 boars and the validation study for another 432 boars. No statistically significant effect was found in the GWAS after adjusting for multiple testing. Effects of 2 markers, which were significant genomewide before correction for multiple testing (P < 0.00005), could be confirmed in the validation study. The major allele of marker ALGA0056781 on SSC1 was positively associated with both higher weight gain and fat deposition. The effect on live-weight gain was 2.25 g/d in the GWAS (P = 0.0003) and 3.73 g/d in the validation study (P = 0.01) and for back fat thickness was 0.15 mm in the GWAS (P < 0.0001) and 0.20 mm in the validation study (P = 0.02). The marker had similar effects on test-day weight gain (GWAS: 3.85 g/d, P = 0.001; validation study: 6.80 g/d, P = 0.003) and back fat area (GWAS: 0.27 cm(2), P < 0.0001; validation study: 0.35 cm(2), P = 0.03). Marker ASGA0056782 on SSC13 was associated with live-weight gain. The major allele had negative effects in both studies (GWAS: -4.88 g/d, P < 0.0001; validation study: -3.75 g/d, P = 0.02). The effects of these 2 markers would have been excluded based on the GWAS alone but were shown to be significantly trait associated in the validation study indicating a false-negative result. The G protein-coupled receptor 126 (GPR126) gene approximately 200 kb downstream of marker ALGA0001781 was shown to be associated with human height and therefore might explain the association with weight gain in pigs. Several traits were affected in an economically desired direction by the minor allele of the markers, pointing to the possibility of improvement through further selection.


Subject(s)
Eating/genetics , Genetic Markers , Swine/genetics , Swine/physiology , Weight Gain/genetics , Animals , Body Composition , Eating/physiology , Genome , Genotype , Male , Weight Gain/physiology
16.
Mol Inform ; 33(3): 171-82, 2014 Mar.
Article in English | MEDLINE | ID: mdl-27485687

ABSTRACT

A comprehensive data-set from a multidisciplinary feeding experiment with the probiotic Enterococcus faecium was analyzed to elucidate effects of the probiotic on growing piglets. Sixty-two piglets were randomly assigned to a control (no probiotic treatment) and a treatment group (E. faecium supplementation). Piglets were weaned at 26 d. Age-matched piglets were sacrificed for the collection of tissue samples at 12, 26, 34 and 54 d. In addition to zootechnical data, the composition and activity of intestinal microbiota, immune cell types, and intestinal responses were determined. Our systems analysis revealed clear effects on several measured variables in 26 and 34 days old animals, while response patterns varied between piglets from different age groups. Correlation analyses identified reduced associations between intestinal microbial communities and immune system reactions in the probiotic group. In conclusion, the developed model is useful for comparative analyses to unravel systems effects of dietary components and their time resolution. The model identified that effects of E. faecium supplementation most prominently affected the interplay between intestinal microbiota and the intestinal immune system. These effects, as well as effects in other subsystems, clustered around weaning, which is the age where piglets are most prone to diarrhea.

17.
Nutr Diabetes ; 3: e62, 2013 Mar 18.
Article in English | MEDLINE | ID: mdl-23507966

ABSTRACT

Obesity has been associated with a higher risk of mortality, whereas caloric restriction reduces the risk. In this study, we examined how body weight development during life affects lifespan in a mouse model for obesity. Therefore, mice of the Berlin Fat Mouse Inbred line were set on either a standard or a high-fat diet (HFD). Median lifespans of standard diet-fed mice were 525 and 539 days for males and female animals, respectively. HFD feeding further decreased lifespan by increasing the risk of mortality. Our data provide evidence that the highest body weight reached in lifetime has only a minor effect on lifespan. More important is the age when the highest body weight is reached, which was positively correlated with lifespan (r=0.77, P<0.0001). Likewise, the daily gain of body weight was negatively correlated with the age of death (r=-0.76, P<0.0001). These data indicate that rapid weight gain in early life followed by rapid weight loss affect lifespan more than the body weight itself. These data suggest that intervention strategies to prevent rapid weight gain are of high impact for a long lifespan.

18.
J Anim Sci ; 91(4): 1669-76, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23345552

ABSTRACT

The aim of this study was to analyze the relationship between the fatty acid profiles of hair of first parity cows and their reproduction and milk performance. Hair samples from 46 German Holstein cows, 50 to 62 d postpartum, were analyzed to assess the relationship. All cows were fed the same diet. The lipid composition of hair was determined by gas chromatography. The fat content in the hair was 0.86%. Hair lipids contributed 75.14% SFA, 15.81% MUFA, and 9.92% PUFA. Cows were classified into a high and a low performance group according to their a) length of the interval from calving to first insemination (CFI), b) 100-d protein yield (100-d PY), and c) length of the interval from calving to conception (CC) and 100-d PY. Cows with short CFI or high 100-d PY or short CC and high 100-d PY had significantly greater proportions of de novo synthesized C12:0 (P < 0.05) compared with the corresponding low performing groups. Increased proportions of C12:0 in the hair were associated with shorter CFI (r = -0.32, P = 0.033) and greater 100-d PY (r = 0.34, P = 0.021). Furthermore, a discriminant analysis with C12:0 as a variable best predicted short CC and high 100-d PY (error rate 33.5%). Greater proportions of de novo synthesized fatty acids in the hair, in particular C12:0, are likely to reflect a sufficient energy availability that is required for fatty acid synthesis in ruminants.


Subject(s)
Fatty Acids/analysis , Hair/chemistry , Lactation/genetics , Reproduction/genetics , Animals , Biomarkers/analysis , Cattle , Chromatography, Gas/veterinary , Discriminant Analysis , Female , Milk/metabolism , Phenotype , Pregnancy , Quantitative Trait, Heritable
19.
Anim Genet ; 44(1): 62-8, 2013 Feb.
Article in English | MEDLINE | ID: mdl-22607452

ABSTRACT

In this study, a genome scan was performed to detect genomic loci that affect fat deposition in white adipose tissues and muscles in 278 F (2) males of reciprocal crosses between the genetically and phenotypically extreme inbred chicken lines New Hampshire (NHI) and White Leghorn (WL77). Genome-wide highly significant quantitative trait loci (QTL) influencing fat deposition in white adipose tissues were found on GGA2 and 4. The peak QTL positions for different visceral and subcutaneous white adipose tissues were located between 41.4 and 112.4 Mb on GGA2 and between 76.2 and 78.7 Mb on GGA4, which explained 4.2-10.4% and 4.3-11.6% respectively of the phenotypic F (2) variances. Contrary to our expectations, the QTL allele descending from the lean line WL77 on GGA4 led to increased fat deposition. We suggest a transgressive action of the obesity allele only if it is not in the genetic background of the line WL77. Additional highly significant loci for subcutaneous adipose tissue mass were identified on GGA12 and 15. For intramuscular fat content, a suggestive QTL was located on GGA14. The analysed crosses provide a valuable resource for further fine mapping of fatness genes and subsequent gene discovery.


Subject(s)
Adiposity , Chickens/genetics , Chickens/metabolism , Quantitative Trait Loci , Animals , Crosses, Genetic , Genome-Wide Association Study , Intra-Abdominal Fat/metabolism , Male , Muscles/metabolism , Subcutaneous Fat/metabolism
20.
Exp Clin Endocrinol Diabetes ; 120(10): 591-7, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22851188

ABSTRACT

In a mouse model for juvenile obesity, we investigated how the age of onset of voluntary exercise affects factors of the metabolic syndrome. One exercise group had access to running wheels from 3 weeks (representing childhood) and another one from 9 weeks on (early adulthood). Both groups were compared to mice without exercise. The investigations were performed under 2 diets (standard maintenance and high-fat diet). Average daily running activity was independent of diet and exercise. On both diets, mice with exercise from 3 weeks on gained 10 g body weight and 5 g fat mass less than mice without exercise. The highest body weight difference between mice on HFD without exercise and mice on standard maintenance diet with exercise was 24 g. Despite the higher energy expenditure during exercise, young mice did not increase their energy intake adjusted for lean mass, while mice with exercise from 9 weeks had an increased energy intake of 6 kJ per day and therefore could not reduce fat mass on both diets. However, mice with exercise from 9 weeks had better glucose tolerance at 20 weeks than mice with exercise from childhood on. Independently of the age of exercise onset, triglycerides were reduced from 2.4 to 1.7 mmol/l on both diets and insulin levels from 1.5 to 0.3 and 4.5 to 1.8 µg/ml on standard maintenance and high-fat diet, respectively, which represents a considerable improvement. Physical activity seems to have long-lasting effects on body composition and health, but they are different depending on when exercise has begun.


Subject(s)
Aging , Appetite Regulation , Metabolic Syndrome/prevention & control , Motor Activity , Obesity/therapy , Animals , Appetitive Behavior , Behavior, Animal , Body Composition , Diet, High-Fat/adverse effects , Energy Intake , Energy Metabolism , Glucose Intolerance/etiology , Glucose Intolerance/prevention & control , Hyperinsulinism/etiology , Hyperinsulinism/prevention & control , Hypertriglyceridemia/etiology , Hypertriglyceridemia/prevention & control , Male , Metabolic Syndrome/etiology , Mice , Mice, Obese , Obesity/etiology , Obesity/metabolism , Obesity/physiopathology , Random Allocation , Weight Gain
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