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1.
Mol Genet Metab ; 82(4): 296-303, 2004 Aug.
Article in English | MEDLINE | ID: mdl-15308127

ABSTRACT

Hyperapobetalipoproteinemia is a common feature of the metabolic syndrome and could result from the interaction between genetic and dietary factors. The objective of this study was to verify whether dietary fat intake interacts with the T94A polymorphism of the liver fatty acid-binding protein (LFABP) gene to modulate plasma apolipoprotein (apo) B levels. Dietary fat and saturated fat intakes were obtained by a dietitian-administered food frequency questionnaire and the LFABP T94A genotype was determined by a PCR-RFLP based method in 623 French-Canadian men recruited through the Chicoutimi Lipid Clinic (279 T94/T94, 285 T94/A94, and 59 A94/A94). The LFABP T94A polymorphism was not associated with plasma apo B levels when fat intake was not taken into consideration. However, in a model including the polymorphism, fat intake expressed as a percentage of total energy intake, the interaction term and covariates, the variance in apo B concentrations was partly explained by the LFABP T94A polymorphism (5.24%, p = 0.01) and by the LFABP T94A*fat interaction (6.25%, p = 0.005). Results were similar when saturated fat replaced fat intake in the model (4.49%, p = 0.02 for LFABP T94A and 6.43%, p = 0.004 for the interaction). Moreover, in men consuming more than 30% of energy from fat, the odds ratio for having plasma apo B levels above 1.04 g/L for A94 carriers was of 0.40 (p = 0.02) compared to T94/T94 homozygotes. Results were similar for carriers of the A94 allele consuming more than 10% of energy from saturated fat (OR: 0.32, p = 0.005). In conclusion, T94/T94 exhibit higher apo B levels whereas carriers of the A94 allele seem to be protected against high apo B levels when consuming a high fat and saturated fat diet. These findings reinforce the importance to take into account gene-diet interactions in the prevention and management of the metabolic syndrome.


Subject(s)
Apolipoproteins B/blood , Carrier Proteins/genetics , Dietary Fats/pharmacology , Metabolic Syndrome/blood , Polymorphism, Genetic , Adult , Canada , Fatty Acid-Binding Proteins , France/ethnology , Humans , Male , Metabolic Syndrome/ethnology , Metabolic Syndrome/genetics , Middle Aged
2.
Biochemistry ; 40(30): 8962-70, 2001 Jul 31.
Article in English | MEDLINE | ID: mdl-11467958

ABSTRACT

A wide variety of viruses require the transient presence of scaffolding proteins to direct capsid assembly. In the case of bacteriophage P22, a model in which the scaffolding protein selectively stabilizes on-pathway growing intermediates has been proposed. The stoichiometry and thermodynamics of binding of the bacteriophage P22 scaffolding protein within the procapsid were analyzed by light scattering and isothermal titration calorimetry. Calorimetric experiments carried out between 10 and 37 degrees C were consistent with the presence of at least two distinct populations of binding sites, in agreement with kinetic evidence obtained by a light scattering assay. Binding to the high-affinity sites occurred at 20 degrees C with a stoichiometry of approximately 60 scaffolding molecules per procapsid and an apparent K(d) of approximately 100-300 nM and was almost completely enthalpy-driven. For the second binding population, precise fitting of the data was impossible due to small heats of binding, but the thermodynamics of binding were clearly distinct from the high-affinity phase. The heat capacity change (DeltaC(p)()) of binding was large for the high-affinity sites and negative for both sets of sites. Addition of sodium chloride (1 M) greatly reduced the magnitude of the apparent DeltaH, in agreement with previous evidence that electrostatic interactions play a major role in binding. A mutant scaffolding protein that forms covalent dimers (R74C/L177I) bound only to the high-affinity sites. These data comprise the first quantitative measurements of the energetics of the coat protein/scaffolding protein interaction.


Subject(s)
Bacteriophage P22/metabolism , Capsid/metabolism , Viral Structural Proteins/metabolism , Bacteriophage P22/genetics , Bacteriophage P22/physiology , Binding Sites/genetics , Calorimetry/methods , Capsid/genetics , Dimerization , Kinetics , Light , Mutation , Protein Binding/genetics , Salmonella typhimurium/genetics , Salmonella typhimurium/virology , Scattering, Radiation , Static Electricity , Thermodynamics , Viral Structural Proteins/genetics , Virus Assembly/genetics
3.
Acta Crystallogr D Biol Crystallogr ; 57(Pt 6): 806-12, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11375500

ABSTRACT

The NH(3)-dependent NAD(+) synthetase (NADS) participates in the biosynthesis of nicotinamide adenine dinucleotide (NAD(+)) by transforming nicotinic acid adenine dinucleotide (NaAD) to NAD(+). The structural behavior of the active site, including stabilization of flexible loops 82-87 and 204-225, has been studied by determination of the crystal structures of complexes of NADS with natural substrates and a substrate analog. Both loops are stabilized independently of NaAD and solely from the ATP-binding site. Analysis of the binding contacts suggests that the minor loop 82-87 is stabilized primarily by a hydrogen bond with the adenine base of ATP. Formation of a coordination complex with Mg(2+) in the ATP-binding site may contribute to the stabilization of the major loop 204-225. The major loop has a role in substrate recognition and stabilization, in addition to the protection of the reaction intermediate described previously. A second and novel Mg(2+) position has been observed closer to the NaAD-binding site in the structure crystallized at pH 7.5, where the enzyme is active. This could therefore be the catalytically active Mg(2+).


Subject(s)
Amide Synthases/chemistry , Bacillus subtilis/enzymology , Amide Synthases/genetics , Amide Synthases/metabolism , Ammonia/chemistry , Binding Sites , Cloning, Molecular , Crystallization , Crystallography, X-Ray , Enzyme Stability , Magnesium/chemistry , Protein Conformation , Substrate Specificity
4.
Biochim Biophys Acta ; 1531(1-2): 4-46, 2001 Mar 30.
Article in English | MEDLINE | ID: mdl-11278170

ABSTRACT

Human apolipoprotein (apo) A-I has been the subject of intense investigation because of its well-documented anti-atherogenic properties. About 70% of the protein found in high density lipoprotein complexes is apo A-I, a molecule that contains a series of highly homologous amphipathic alpha-helices. A number of significant experimental observations have allowed increasing sophisticated structural models for both the lipid-bound and the lipid-free forms of the apo A-I molecule to be tested critically. It seems clear, for example, that interactions between amphipathic domains in apo A-I may be crucial to understanding the dynamic nature of the molecule and the pathways by which the lipid-free molecule binds to lipid, both in a discoidal and a spherical particle. The state of the art of these structural studies is discussed and placed in context with current models and concepts of the physiological role of apo A-I and high-density lipoprotein in atherosclerosis and lipid metabolism.


Subject(s)
Apolipoprotein A-I/chemistry , Amino Acid Sequence , Animals , Apolipoprotein A-I/genetics , Apolipoprotein A-I/metabolism , Arteriosclerosis/metabolism , Crystallography , Humans , Lipid Metabolism , Lipoproteins, HDL/metabolism , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Sequence Data , Sequence Alignment , Species Specificity
5.
Bioorg Med Chem Lett ; 10(21): 2427-30, 2000 Nov 06.
Article in English | MEDLINE | ID: mdl-11078193

ABSTRACT

Isothermal titration calorimetry was used to analyze the binding of an enantiomeric pair of inhibitors to the stromelysin-1 catalytic domain. Differences in binding affinity are attributable to different conformational entropy penalties suffered upon binding. Two possible explanations for these differences are proposed.


Subject(s)
Hydroxamic Acids/chemistry , Hydroxamic Acids/metabolism , Matrix Metalloproteinase Inhibitors , Oligopeptides/chemistry , Oligopeptides/metabolism , Protease Inhibitors/chemistry , Protease Inhibitors/metabolism , Calorimetry/methods , Catalytic Domain , Humans , Matrix Metalloproteinase 3/metabolism , Molecular Conformation , Molecular Structure , Protein Binding , Stereoisomerism , Thermodynamics
6.
Mol Biol Cell ; 11(8): 2643-55, 2000 Aug.
Article in English | MEDLINE | ID: mdl-10930460

ABSTRACT

How recycling receptors are segregated from down-regulated receptors in the endosome is unknown. In previous studies, we demonstrated that substitutions in the transferrin receptor (TR) transmembrane domain (TM) convert the protein from an efficiently recycling receptor to one that is rapidly down regulated. In this study, we demonstrate that the "signal" within the TM necessary and sufficient for down-regulation is Thr(11)Gln(17)Thr(19) (numbering in TM). Transplantation of these polar residues into the wild-type TR promotes receptor down-regulation that can be demonstrated by changes in protein half-life and in receptor recycling. Surprisingly, this modification dramatically increases the TR internalization rate as well ( approximately 79% increase). Sucrose gradient centrifugation and cross-linking studies reveal that propensity of the receptors to self-associate correlates with down-regulation. Interestingly, a number of cell surface proteins that contain TM polar residues are known to be efficiently down-regulated, whereas recycling receptors for low-density lipoprotein and transferrin conspicuously lack these residues. Our data, therefore, suggest a simple model in which specific residues within the TM sequences dramatically influence the fate of membrane proteins after endocytosis, providing an alternative signal for down-regulation of receptor complexes to the well-characterized cytoplasmic tail targeting signals.


Subject(s)
Antigens, Differentiation, B-Lymphocyte/chemistry , Endocytosis/physiology , Histocompatibility Antigens Class II/chemistry , Receptors, Cell Surface/metabolism , Receptors, Transferrin/metabolism , Amino Acid Sequence , Animals , Antigens, Differentiation, B-Lymphocyte/drug effects , Antigens, Differentiation, B-Lymphocyte/physiology , Chick Embryo , Cross-Linking Reagents/pharmacology , Down-Regulation/drug effects , Endocytosis/drug effects , Fibroblasts , Half-Life , Histocompatibility Antigens Class II/drug effects , Histocompatibility Antigens Class II/physiology , Lysosomes/drug effects , Lysosomes/metabolism , Models, Molecular , Molecular Sequence Data , Mutation , Protein Structure, Tertiary , Receptors, Cell Surface/chemistry , Receptors, Cell Surface/drug effects , Receptors, Transferrin/chemistry , Receptors, Transferrin/drug effects , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/drug effects , Recombinant Fusion Proteins/metabolism , Sequence Alignment
7.
Biochemistry ; 38(41): 13592-601, 1999 Oct 12.
Article in English | MEDLINE | ID: mdl-10521266

ABSTRACT

Matrix metalloproteinases (MMPs) are implicated in diseases such as arthritis and cancer. Among these enzymes, stromelysin-1 can also activate the proenzymes of other MMPs, making it an attractive target for pharmaceutical design. Isothermal titration calorimetry (ITC) was used to analyze the binding of three inhibitors to the stromelysin catalytic domain (SCD). One inhibitor (Galardin) uses a hydroxamic acid group (pK(a) congruent with 8.7) to bind the active site zinc; the others (PD180557 and PD166793) use a carboxylic acid group (pK(a) congruent with 4.7). Binding affinity increased dramatically as the pH was decreased over the range 5.5-7.5. Experiments carried out at pH 6.7 in several different buffers revealed that approximately one and two protons are transferred to the enzyme-inhibitor complexes for the hydroxamic and carboxylic acid inhibitors, respectively. This suggests that both classes of inhibitors bind in the protonated state, and that one amino acid residue of the enzyme also becomes protonated upon binding. Similar experiments carried out with the H224N mutant gave strong evidence that this residue is histidine 224. DeltaG, DeltaH, DeltaS, and DeltaC(p) were determined for the three inhibitors at pH 6.7, and DeltaC(p) was used to obtain estimates of the solvational, translational, and conformational components of the entropy term. The results suggest that: (1) a polar group at the P1 position can contribute a large favorable enthalpy, (2) a hydrophobic group at P2' can contribute a favorable entropy of desolvation, and (3) P1' substituents of certain sizes may trigger an entropically unfavorable conformational change in the enzyme upon binding. These findings illustrate the value of complete thermodynamic profiles generated by ITC in discovering binding interactions that might go undetected when relying on binding affinities alone.


Subject(s)
Carboxylic Acids/metabolism , Catalytic Domain , Hydroxamic Acids/metabolism , Matrix Metalloproteinase 3/metabolism , Matrix Metalloproteinase Inhibitors , Protease Inhibitors/metabolism , Binding Sites , Calorimetry/methods , Dipeptides/metabolism , Humans , Hydrogen-Ion Concentration , Macromolecular Substances , Oligopeptides/chemistry , Oligopeptides/metabolism , Protease Inhibitors/chemistry , Protons , Structure-Activity Relationship , Thermodynamics
8.
Acta Crystallogr D Biol Crystallogr ; 55(Pt 9): 1578-83, 1999 Sep.
Article in English | MEDLINE | ID: mdl-10489452

ABSTRACT

The crystallization of recombinant human apolipoprotein A-I (apo A-I), the major protein component of high-density lipoprotein, in a new crystal form is described. The fragment crystallized, residues 44-243 of native apo A-I [apo Delta(1--43)A-I], is very similar to intact native apo A-I in its ability to bind lipid, to be incorporated into high-density lipoproteins and to activate lecithin-cholesterol acyl transferase. Apo Delta(1-43)A-I crystallizes, in the presence of beta-D-octylglucopyranoside, in space group I222 or I2(1)2(1)2(1), with unit-cell parameters a = 37. 11, b = 123.62, c = 164.65 A and a diffraction limit of 3.2 A. These form II crystals grow under conditions of significantly lower ionic strength than the original form I crystals (space group P2(1)2(1)2(1), a = 97.47, b = 113.87, c = 196.19 A, diffraction limit 3.0 A). Packing arguments show that the unusual open conformation of apo Delta(1-43)A-I found in the form I crystals cannot be packed into the smaller oddly proportioned form II unit cell. Monomeric apo Delta(1-43)A-I, as either a four-helix bundle ( approximately 75 x 30 x 30 A) or an extended helical rod (approximately 150 x 20 x 20 A), can be packed into the form II unit cell. It is concluded, therefore, that apo Delta(1-43)A-I may have crystallized in one of these distinct conformations in the form II crystals.


Subject(s)
Apolipoprotein A-I/chemistry , Peptide Fragments/chemistry , Crystallization , Crystallography, X-Ray , Detergents/chemistry , Humans , Osmolar Concentration , Protein Conformation , Protein Structure, Secondary , Recombinant Proteins/chemistry
9.
J Biol Chem ; 274(21): 14541-4, 1999 May 21.
Article in English | MEDLINE | ID: mdl-10329643

ABSTRACT

The two main competing models for the structure of discoidal lipoprotein A-I complexes both presume that the protein component is helical and situated around the perimeter of a lipid bilayer disc. However, the more popular "picket fence" model orients the protein helices perpendicular to the surface of the lipid bilayer, while the alternative "belt" model orients them parallel to the bilayer surface. To distinguish between these models, we have investigated the structure of human lipoprotein A-I using a novel form of polarized internal reflection infrared spectroscopy that can characterize the relative orientation of protein and lipid components in the lipoprotein complexes under native conditions. Our results verify lipid bilayer structure in the complexes and point unambiguously to the belt model.


Subject(s)
Lipoprotein(a)/analogs & derivatives , Models, Molecular , Humans , Lipoprotein(a)/ultrastructure
10.
Acta Crystallogr D Biol Crystallogr ; 55(Pt 12): 2013-21, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10666577

ABSTRACT

The crystallization and structure determination of recombinant human apolipoprotein A-I (apo A-I), the major protein component of high-density lipoprotein, is described. The fragment crystallized, residues 44-243 of native apo A-I [apo Delta(1-43)A-I], is very similar to intact native apo A-I in its ability to bind lipid, to be incorporated into high-density lipoproteins and to activate lecithin-cholesterol acyl transferase. Apo Delta(1-43)A-I crystallizes from 1.0-1.4 M sodium citrate pH 6.5-7.5 in space group P2(1)2(1)2(1), with unit-cell parameters a = 97.47, b = 113.87, c = 196.19 A (crystal form I). The crystals exhibit unusual diffraction intensity spikes and axial extinctions that are discussed in the context of the 4 A crystal structure. When flash-cooled to 100 K, the crystals diffract synchrotron radiation to 3 A resolution. Radiation sensitivity and crystal-to-crystal variation have hindered the assembly of a complete 3 A data set.


Subject(s)
Apolipoprotein A-I/chemistry , Apolipoprotein A-I/isolation & purification , Crystallization , Crystallography, X-Ray , Humans , Models, Molecular , Peptide Fragments/chemistry , Peptide Fragments/isolation & purification , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Static Electricity
11.
Biochemistry ; 37(34): 11714-25, 1998 Aug 25.
Article in English | MEDLINE | ID: mdl-9718294

ABSTRACT

Deletion mutants of human apolipoprotein A-I (apo hA-I) have been produced from a bacterial expression system to explore the function of the specific domains comprising residues 1-43, 1-65, 88-98, and 187-243, respectively, in the lipid-free conformation and in the lipid-binding mechanism of apo hA-I. Initial studies on apo Delta(1-43)A-I and apo Delta(187-243)A-I have already been reported. To aid purification of these mutants, a histidine-containing N-terminal extension was incorporated (+his); in cases where comparison with the (-his) construct was possible, little effect on the physical properties due to the (+his) extension was found. All mutants have folded structures in their lipid-free state, however these structures differ widely in their relative thermodynamic stability and extent of secondary structure. The mutant with the fewest residues deleted, apo Delta(88-98)A-I(+his), has the least secondary structure (only 34% helix) and is also the least stable (DeltaG = 2.9 kcal/mol). Determined from sedimentation velocity measurements on the lipid-free proteins, all but apo Delta(1-65)A-I(+his) exhibited a range of conformers in solution, which fluctuated around a highly elongated species (dimensions equal to approximately (14-16) x approximately 2.3 nm). Apo Delta(1-65)A-I(+his) exhibited a discrete species which was less asymmetric (dimensions equal to 9 x 2.9 nm). Apo Delta(88-98)A-I(+his) showed extreme heterogeneity with no predominating conformer. Spectroscopic studies (ANS binding and circular dichroism) indicate that there is little difference in the lipid-free structure of the carboxy-terminal deletion mutant, apo Delta(187-243)A-I(+/-his) compared to wild-type (wt) apo wtA-I(+/-his), but substantial differences are observed between wt and the amino-terminal deletion mutants, apo Delta(1-43)A-I, apo Delta(1-65)A-I(+his), and apo Delta(88-98)A-I(+his). In contrast, the lipid-binding properties are impaired for apo Delta(187-243)A-I(+/-his), as measured by dimyristoyl phosphatidylcholine (DMPC) liposome turbidity clearance kinetics and palmitoyloleoyl phosphatidylcholine (POPC) equilibrium binding. Apo Delta(1-43)A-I, apo Delta(1-65)A-I(+his), and apo Delta(88-98)A-I(+his) show lipid affinities statistically similar to apo wtA-I(+his), but significantly defective DMPC clearance kinetics. Interestingly, lecithin:cholesterol acyltransferase (LCAT) activation results correlate qualitatively with the lipid-binding affinity for all mutants but apo Delta(88-98)A-I(+his), suggesting that this mutant has an altered and possibly noncooperative lipid-bound structure as well as an altered lipid-free structure. These results suggest helix 1 (residues 44-65) and helix 10 (residues 220-240) are both required for native lipid-binding properties, while the presence of internal residues, at least helix 3 (residues 88-98), is essential for proper folding of both the lipid-free and lipid-bound conformations. Importantly, studies on apo Delta(88-98)A-I(+his) provide the first experimental evidence that a native-like structure is not necessary for native-like lipid affinity, but apparently is necessary for both DMPC solubilization and LCAT activation. These results provide support for a hypothetical, multistep structure-based mechanism for apo hA-I lipid binding.


Subject(s)
Apolipoprotein A-I/chemistry , Apolipoprotein A-I/genetics , Lipids/chemistry , Peptide Fragments/genetics , Sequence Deletion , Apolipoprotein A-I/metabolism , Circular Dichroism , Enzyme Activation , Factor Xa/metabolism , Histidine/metabolism , Humans , Hydrolysis , Lipid Metabolism , Lipids/genetics , Mutagenesis, Site-Directed , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Phosphatidylcholine-Sterol O-Acyltransferase/metabolism , Protein Binding/genetics , Protein Folding , Ultracentrifugation
12.
Biochemistry ; 37(3): 945-55, 1998 Jan 20.
Article in English | MEDLINE | ID: mdl-9454585

ABSTRACT

An amino-terminal deletion mutant (residues 1-43) and a carboxy-terminal deletion mutant (residues 187-243) of human apoliprotein A-I (apo hA-I) have been produced from a bacterial expression system to explore the importance of the missing residues for the conformation of apo hA-I. Our focus has been to study the lipid-free structure of apo hA-I to understand how discrete domains influence the conformational plasticity of the protein and, by inference, the mechanism of lipid binding. All spectral and physical measurements indicate that both apo delta(1-43)A-I and apo delta(187-243)A-I have folded, tertiary structures. These structures differ in the specific arrangement of helical domains based, in part, on their relative thermodynamic stability, near- and far-UV CD, limited proteolysis, and the accessibility of tryptophans to fluorescence quenchers. In addition, all data indicate that the folded domains of apo hA-I and apo delta(187-243)A-I are very similar. Results from analytical ultracentrifugation suggest that lipid-free apo hA-I and the deletion mutants each exist in a dynamic equilibrium between a loosely folded, helical bundle and an elongated monomeric helical hairpin. The conformational heterogeneity is consistent with significant ANS binding exhibited by all three proteins and could help to explain the facile lipid binding properties of apo hA-I.


Subject(s)
Apolipoprotein A-I/chemistry , Apolipoprotein A-I/genetics , Lipid Metabolism , Sequence Deletion , Amino Acid Sequence , Anilino Naphthalenesulfonates/metabolism , Apolipoprotein A-I/biosynthesis , Apolipoprotein A-I/isolation & purification , Chymotrypsin , Circular Dichroism , Fluorescent Dyes/metabolism , Humans , Hydrolysis , Lipids/chemistry , Protein Binding , Protein Conformation , Protein Folding , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Spectrometry, Fluorescence , Ultracentrifugation
13.
Proc Natl Acad Sci U S A ; 94(23): 12291-6, 1997 Nov 11.
Article in English | MEDLINE | ID: mdl-9356442

ABSTRACT

The structure of truncated human apolipoprotein A-I (apo A-I), the major protein component of high density lipoprotein, has been determined at 4-A resolution. The crystals comprise residues 44-243 (exon 4) of apo A-I, a fragment that binds to lipid similarly to intact apo A-I and that retains the lipid-bound conformation even in the absence of lipid. The molecule consists almost entirely of a pseudo-continuous, amphipathic alpha-helix that is punctuated by kinks at regularly spaced proline residues; it adopts a shape similar to a horseshoe of dimensions 125 x 80 x 40 A. Four molecules in the asymmetric unit associate via their hydrophobic faces to form an antiparallel four-helix bundle with an elliptical ring shape. Based on this structure, we propose a model for the structure of apo A-I bound to high density lipoprotein.


Subject(s)
Apolipoprotein A-I/chemistry , Lipid Metabolism , Protein Conformation , Amino Acid Sequence , Apolipoprotein A-I/metabolism , Binding Sites , Crystallography, X-Ray , Humans , Lipids/chemistry , Molecular Sequence Data , Protein Binding
14.
Biochemistry ; 36(24): 7615-24, 1997 Jun 17.
Article in English | MEDLINE | ID: mdl-9200714

ABSTRACT

The domain structures of lipid-free and lipid-bound apolipoprotein A-I (apo A-I) containing reduced and oxidized methionines were analyzed by limited proteolysis. Lipid-free apo A-I is cleaved primarily in the extreme carboxy-terminus and, to a much lesser extent, in the central region of the protein between residues 115 and 136. Oxidation of methionines 112 and 148 to the corresponding sulfoxides in putative amphipathic helices 4 (P99-E120) and 6 (P143-A164), respectively, causes helices 1 (L44-G65), 2 (P66-S87), and 7 (P165-G186) to become susceptible to protease digestion. These results are consistent with a discrete, globular tertiary structure for the lipid-free protein minimally formed from amphipathic helices 1, 2, 4, 6, and 7. In distinct contrast to lipid-free apo A-I, lipid-bound apo A-I is most susceptible to cleavage in the extreme amino-terminus and, to a lesser extent, in both the central and carboxy-terminal regions. The observed cleavage pattern for the reduced lipid-bound protein supports the existence of many of the turns between helices predicted by sequence analysis of the lipid-bound protein. Methionine oxidation of lipid-bound protein results in a decreased protease susceptibility in the extreme amino-terminus and a concomitant increase in protease susceptibility in the central and carboxy-terminal regions. The results from methionine oxidation indicate the oxidation state of the protein is an important determinant in defining the conformation of both lipid-free and lipid-bound apo A-I.


Subject(s)
Apolipoprotein A-I/chemistry , Apolipoprotein A-I/metabolism , Endopeptidases/metabolism , Lipid Metabolism , Methionine/metabolism , Amino Acid Sequence , Chymotrypsin/metabolism , Electrophoresis, Polyacrylamide Gel , Humans , Models, Molecular , Molecular Sequence Data , Oxidation-Reduction , Protein Conformation , Protein Structure, Secondary , Serine Endopeptidases/metabolism
15.
Biochemistry ; 36(2): 288-300, 1997 Jan 14.
Article in English | MEDLINE | ID: mdl-9003180

ABSTRACT

An amino-terminal deletion mutant (residues 1-43) of human apolipoprotein A-I (apo hA-I) has been produced from a bacterial expression system to explore the structural and functional role of these amino acids, encoded by exon 3, in apo hA-I. Lipid binding of apo delta (1-43)A-I and lipid binding of apo hA-I are very similar as assessed by surface activity, lipid association with palmitoyloleoylphosphatidylcholine (POPC) vesicles, and lipid association with plasma lipoproteins. Preliminary kinetic measurements appear to show that the reactivity of lecithin:cholesterol acyltransferase (LCAT) with the mutant is slightly decreased compared to wild-type apo hA-I. Collectively, these results indicate that the N-terminal region is not necessary for lipid binding or activation of LCAT. In contrast, there are significant structural differences between lipid-free apo delta (1-43)A-I and apo hA-I, as judged by denaturant-induced unfolding, binding of the fluorescent probe 1-anilinonaphthalene-8-sulfonate, surface balance measurements, and far- and near-ultraviolet circular dichroic spectroscopy. All spectral and physical measurements indicate apo delta (1-43)A-I has a folded, tertiary structure, although it is significantly less stable than that of apo hA-I. It is concluded that the N-terminal 43 residues are an important structural element of the lipid-free conformational state of apo hA-I, the absence of which induces a fundamentally different fold for the remaining carboxy-terminal residues, compared to those in native apo hA-I.


Subject(s)
Apolipoprotein A-I/chemistry , Phosphatidylcholine-Sterol O-Acyltransferase/blood , Phosphatidylcholines/metabolism , Protein Conformation , Protein Folding , Anilino Naphthalenesulfonates , Apolipoprotein A-I/isolation & purification , Apolipoprotein A-I/metabolism , Binding Sites , Calorimetry , Circular Dichroism , Cloning, Molecular , DNA Primers , Escherichia coli , Fluorescent Dyes , Humans , Kinetics , Polymerase Chain Reaction , Protein Denaturation , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Sequence Deletion , Spectrometry, Fluorescence , Spectrophotometry, Ultraviolet , Substrate Specificity , Thermodynamics
16.
Proc Natl Acad Sci U S A ; 93(26): 15030-5, 1996 Dec 24.
Article in English | MEDLINE | ID: mdl-8986758

ABSTRACT

The T-cell antigen coreceptor CD4 also serves as the receptor for the envelope glycoprotein gp120 of HIV. Extensive mutational analysis of CD4 has implicated residues from a portion of the extracellular amino-terminal domain (D1) in gp120 binding. However, none of these proteins has been fully characterized biophysically, and thus the precise effects on molecular structure and binding interactions are unknown. In the present study, we produced soluble versions of three mutant CD4 molecules (F43V, G47S, and A55F) and characterized their structural properties, thermostability, and ability to bind gp120. Crystallographic and thermodynamic analysis showed minimal structural alterations in the F43V and G47S mutant proteins, which have solvent-exposed mutant side chains. In contrast, some degree of disorder appears to exist in the folded state of A55F, as a result of mutating a buried side chain. Real time kinetic measurements of the interaction of the mutant proteins with gp120 showed affinity decreases of 5-fold for G47S, 50-fold for A55F, and 200-fold for F43V. Although both rate constants for the binding reaction were affected by these mutations, the loss in affinity was mainly due to a decrease in on rates, with less drastic changes occurring in the off rates. These observations suggest the involvement of conformational adaptation in the CD4-gp120 interaction. Together, the structural and kinetic data confirm that F43V is a critical residue in gp120 recognition site, which may also include main chain interactions at residue Gly-47.


Subject(s)
CD4 Antigens/chemistry , CD4 Antigens/metabolism , HIV Envelope Protein gp120/metabolism , Mutagenesis, Site-Directed , Protein Structure, Secondary , Binding Sites , Crystallography, X-Ray , Humans , Kinetics , Models, Molecular , Point Mutation , Protein Denaturation , Protein Folding , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Thermodynamics , Urea
17.
Biochemistry ; 34(19): 6464-74, 1995 May 16.
Article in English | MEDLINE | ID: mdl-7756278

ABSTRACT

CD4 is a transmembrane glycoprotein expressed on T-lymphocytes. It is a receptor for class II major histocompatibility complex (MHC) molecules and for the HIV envelope glycoprotein gp120. The extracellular portion of CD4 (sCD4) is a rod-shaped molecule consisting of four domains designated D1 through D4. Denaturant-induced unfolding of sCD4 and of isolated CD4 domains, D1D2 and D3D4, was measured using both ultraviolet absorbance and fluorescence difference spectroscopy. Though both absorbance and fluorescence changes arise from changes in the solvent exposure of the intrinsic tryptophan chromophores, the unfolding curves obtained with the two techniques looked very different for sCD4 and D3D4. This dissimilarity is indicative of a greater than two-state unfolding mechanism. The global three-state fit for sCD4, which simultaneously fit both absorbance and emission data to a model with one thermodynamically stable unfolding intermediate, was significantly better than the best two-state fit, suggesting that there are two unfolding regions. Unfolding of isolated D3D4 also fit a three-state model while unfolding of isolated D1D2 fit satisfactorily to a two-state model. The unfolding of these two isolated fragments could not be summed to yield the unfolding profile of sCD4, implying that an interaction between D2 and D3 is lost by splitting sCD4 between these domains. The unfolding data of isolated D1D2 and D3D4 were used with the solvent-accessible surface area of tryptophans calculated from atomic crystal structure coordinates of human D1D2 and rat D3D4 to assign the unfolding steps. The data are consistent with a model for sCD4 unfolding wherein the one stable intermediate appears to contain only the D4 domain unfolded. The remaining three domains apparently unfold as a unit. Furthermore, interactions between domains D1, D2, and D3 appear to stabilize D4, suggesting that stabilizing interactions exist between D3 and D4 even though the unfolding of the D3D4 fragment is best fit by a three-state model. This report is the first to describe a thermodynamic basis for a wide range of biological properties implicated for CD4.


Subject(s)
CD4 Antigens/chemistry , Humans , In Vitro Techniques , Peptide Fragments/chemistry , Protein Denaturation , Solubility , Spectrometry, Fluorescence , T-Lymphocytes/chemistry , Thermodynamics , Tryptophan/chemistry , Urea
20.
Virology ; 193(1): 222-33, 1993 Mar.
Article in English | MEDLINE | ID: mdl-8438567

ABSTRACT

Viral protein X (vpx) is a virion-associated HIV-2/SIV accessory protein that enhances viral infectivity and replication in natural target cells. To investigate whether other viral components affect its biosynthesis, subcellular localization, and virion incorporation, we expressed HIV-2 vpx in a mammalian cell system and examined its transport and packaging requirements using an in trans complementation assay. The complete vpx coding region of HIV-2ST was placed under the control of a high-efficiency promoter system (SR alpha) which contained both an SV40 promoter/enhancer region and R/U5 elements of the HTLV-1 LTR. Following transfection of Cos-1 cells, this construct (pSR alpha-vpx) facilitated high level expression of vpx, as demonstrated by Western blot analysis of transfected cell lysates. Moreover, indirect immunofluorescence analysis revealed an intense vpx staining pattern distributed evenly throughout the cytoplasm of transfected cells. This distribution differed markedly from cells expressing wild-type HIV-2 in which vpx localized to the inner surface of the plasma membrane. To determine whether other HIV components were required for this surface localization, we expressed vpx in the context of replication competent HIV-1 and HIV-2 proviruses. Following cotransfection with a vpx-deficient HIV-2 provirus (pXM7), eukaryotically expressed vpx targeted to the plasma membrane and colocalized with HIV-2 p27 gag in a pattern indistinguishable from wild-type HIV-2. Moreover, progeny virions from cotransfected Cos-1 cells contained wild-type amounts of vpx protein, demonstrating that vpx could be efficiently packaged in trans. Under the same experimental conditions, cotransfection of vpx with wild-type HIV-1 (pHXB2) and with vpr-deficient HIV-1 (pR2) failed to result in detectable cell surface targeting or virion incorporation of vpx despite its high level cellular expression. These results demonstrate that efficient intracellular transport and packaging of vpx require interaction with other type-specific virus components.


Subject(s)
Genes, Viral/physiology , HIV-2/genetics , Retroviridae Proteins/metabolism , Viral Regulatory and Accessory Proteins/metabolism , Virion/metabolism , Amino Acid Sequence , Animals , Biological Transport/physiology , Cell Line , Chlorocebus aethiops , HIV-2/metabolism , Molecular Sequence Data , Recombinant Proteins/metabolism , Retroviridae Proteins/genetics , Viral Regulatory and Accessory Proteins/genetics
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