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1.
Prog Biophys Mol Biol ; 186: 53-56, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38145808

ABSTRACT

Artificial Intelligence (AI), as an academic discipline, is traceable to the mid-1950s but it is currently exploding in applications with successes and concerns. AI can be defined as intelligence demonstrated by computers, with intelligence difficult to define but it must include concepts of ability to learn, reason, and generalize from a vast amount of information and, we propose, to infer meaning. The type of AI known as general AI, has strong, but unrealized potential both for assessing and also for solving major problems with the scientific theory of Darwinian evolution, including its modern variants and for origin of life studies. Specifically, AI should be applied first to evaluate the strengths and weaknesses of the assumptions and empirical information underpinning theories of the origin of life and probability of its evolution. AI should then be applied to assess the scientific validity of the theory of how abundant life came to be on earth.


Subject(s)
Artificial Intelligence , Intelligence , Earth, Planet , Probability
2.
Article in English | MEDLINE | ID: mdl-37715932

ABSTRACT

On roadways in the USA, the highest risk of death and the highest economic costs result from alcohol-impaired driving. The National Academies of Sciences Engineering and Medicine has the stated goal, "Lowering the BAC limits set by state law is an evidence-based, poplulation-level intervention with widespread impact that could help reach a bold goal: zero deaths from drinking and driving." I provide scientific, empirical evidence from around the world that: (a) documents benefits from lowering the per se blood alcohol from 0.08% to 0.05%; and (b) I support this conclusion with a novel, graphical comparison showing logically that failing to support 0.05% BAC is based on giving priority to non-scientific criteria.

3.
Prog Biophys Mol Biol ; 182: 75-102, 2023 09.
Article in English | MEDLINE | ID: mdl-37343790

ABSTRACT

In this perspective review, we assess fundamental flaws in Darwinian evolution, including its modern versions. Fixed mutations 'explain' microevolution but not macroevolution including speciation events and the origination of all the major body plans of the Cambrian explosion. Complex, multifactorial change is required for speciation events and inevitably requires self-organization beyond what is accomplished by known mechanisms. The assembly of ribosomes and ATP synthase are specific examples. We propose their origin is a model for what is unexplained in biological evolution. Probability of evolution is modeled in Section 9 and values are absurdly improbable. Speciation and higher taxonomic changes become exponentially less probable as the number of required, genetically-based events increase. Also, the power required of the proposed selection mechanism (survival of the fittest) is nil for any biological advance requiring multiple changes, because they regularly occur in multiple generations (different genomes) and would not be selectively conserved by the concept survival of the fittest (a concept ultimately centered on the individual). Thus, survival of the fittest cannot 'explain' the origin of the millions of current and extinct species. We also focus on the inadequacies of laboratory chemistry to explain the complex, required biological self-organization seen in cells. We propose that a 'bioelectromagnetic' field/principle emerges in living cells. Synthesis by self-organization of massive molecular complexes involves biochemical responses to this emergent field/principle. There are ramifications for philosophy, science, and religion. Physics and mathematics must be more strongly integrated with biology and integration should receive dedicated funding with special emphasis for medical applications; treatment of cancer and genetic diseases are examples.


Subject(s)
Genome , Philosophy , Biological Evolution
4.
Prog Biophys Mol Biol ; 172: 24-38, 2022 08.
Article in English | MEDLINE | ID: mdl-35439500

ABSTRACT

Darwinian evolution is a nineteenth century descriptive concept that itself has evolved. Selection by survival of the fittest was a captivating idea. Microevolution was biologically and empirically verified by discovery of mutations. There has been limited progress to the modern synthesis. The central focus of this perspective is to provide evidence to document that selection based on survival of the fittest is insufficient for other than microevolution. Realistic probability calculations based on probabilities associated with microevolution are presented. However, macroevolution (required for all speciation events and the complexifications appearing in the Cambrian explosion) are shown to be probabilistically highly implausible (on the order of 10-50) when based on selection by survival of the fittest. We conclude that macroevolution via survival of the fittest is not salvageable by arguments for random genetic drift and other proposed mechanisms. Evolutionary biology is relevant to cancer mechanisms with significance beyond academics. We challenge evolutionary biology to advance boldly beyond the inadequacies of the modern synthesis toward a unifying theory modeled after the Grand Unified Theory in physics. This should include the possibility of a fifth force in nature. Mathematics should be rigorously applied to current and future evolutionary empirical discoveries. We present justification that molecular biology and biochemistry must evolve to aeon (life) chemistry that acknowledges the uniqueness of enzymes for life. To evolve, biological evolution must face the known deficiencies, especially the limitations of the concept survival of the fittest, and seek solutions in Eigen's concept of self-organization, Schrödinger's negentropy, and novel approaches.


Subject(s)
Biological Evolution , Selection, Genetic , Molecular Biology , Mutation , Physics
6.
Comput Methods Programs Biomed ; 198: 105768, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33130493

ABSTRACT

BACKGROUND AND OBJECTIVE: The accuracy of systolic and diastolic blood pressure levels from oscillometric devices is difficult to assess for patients with atrial fibrillation and arterial stiffness; in such cases, changes in these levels from heartbeat to heartbeat can only be known if the actual total waveform during a test can be observed. Variation in these levels affects the accuracy of the algorithms in oscillometric devices where precision is of paramount importance according to the American College of Cardiology and the American Heart Association. Recently issued guidelines lowered the definition of high blood pressure; approximately three-quarters of men over 65 years of age meet the criterion and are diagnosed as hypertensive. A review in 2019 reported that atrial fibrillation affects approximately 3% of the general population in the U.S. and is twice as common in hypertensive patients. The actual shape and details of the arterial blood pressure waveform not only reveal variations in rhythm and in systolic and diastolic levels but has also proven to be valuable in the diagnosis of arterial stiffness and atrial fibrillation which are vital to determining the physiological status of a patient's cardiovascular system. This research pertains to the identification of a patient's total arterial blood pressure waveform using only the measured pulsations in the cuff of an oscillometric device. METHOD: Empirically formulated hypothetical arterial blood pressure waveforms were simulated and assumed to be unknown. Oscillometric pulsations corresponding to these simulated unknown waveforms were used as input to a new model-based extended Kalman filter algorithm for identifying the levels, shape and features of the unknown waveforms. RESULTS: Simulations with hypothetical waveforms with varying systolic and diastolic levels and with variations in heartbeat rhythm associated arterial fibrillation and stiff arteries, demonstrate potential arterial pressure estimate accuracies of 1.5 mmHg with standard deviations on the order of 0.1 mmHg; in addition, variations in heartbeat rhythm were observed and degrees of arterial stiffness identified and quantified. CONCLUSIONS: Computational analysis of the oscillometric cuff pulsations with the extended Kalman filter can be used to detect variations in heartbeat rhythm and blood pressure levels associated atrial fibrillation, quantify arterial stiffness, and provide noninvasive continuous blood pressure monitoring without the need for electrocardiogram or photoplethysmography sensors.


Subject(s)
Atrial Fibrillation , Vascular Stiffness , Atrial Fibrillation/diagnosis , Blood Pressure , Blood Pressure Determination , Humans , Male , Oscillometry
7.
Front Biosci (Landmark Ed) ; 25(10): 1894-1900, 2020 06 01.
Article in English | MEDLINE | ID: mdl-32472763

ABSTRACT

We analyzed the nucleocapsid and surface proteins from several Coronaviridae viruses using an alignment-free computer program. Three isolates of novel, human coronavirus (SARS0CoV-2) (2019) that are responsible for the current pandemic and older SARS strains of human and animal coronaviruses were examined. The nucleocapsid and glycoprotein sequences are identical for the three novel 2019 human isolates and they are closely related to these sequences in six bat and human SARS coronaviruses. This strongly supports the bat origin of the pandemic, novel coronavirus. One surface glycoprotein fragment of 111 amino acids is the largest, conserved, common permutation in the examined bat SARS-like and human SARS viruses, including the Covid-19 virus. BLAST analysis confirmed that this fragment is conserved only in the human and bat SARS strains. This fragment likely is involved in infectivity and is of interest for vaccine development. Surface glycoprotein and nucleocapsid protein sequence homologies of 58.9% and 82.5%, respectively, between the novel SARS0CoV-2 strains and the human SARS (2018) virus suggest that existing anti-SARS vaccines may provide some protection against the novel coronavirus.


Subject(s)
Betacoronavirus/genetics , Coronaviridae/genetics , Coronavirus Infections , Nucleocapsid Proteins/genetics , Pandemics , Pneumonia, Viral , Spike Glycoprotein, Coronavirus/genetics , Algorithms , Amino Acid Sequence , Animals , COVID-19 , Chiroptera/virology , Coronaviridae/classification , Coronavirus Nucleocapsid Proteins , Genome, Viral/genetics , Humans , Phosphoproteins , SARS-CoV-2 , Software , Species Specificity , Viral Envelope Proteins/genetics
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