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2.
Georgian Med News ; (331): 78-84, 2022 Oct.
Article in English | MEDLINE | ID: mdl-36539135

ABSTRACT

SARS-CoV-2 is the cause of COVID-19 disease and responsible for a pandemic since the 2020. Multiple organ involvement has been described including cutaneous symptoms. Affection of skin appendages, however, seems to be under-reported except for COVID-toes. We performed a PUBMED research for "COVID-19" OR "SARS-CoV-2" AND "skin appendages", "hair", "nails", and "skin glands" from January 2020 to April 2022. COVID toes were excluded since this symptom had extensively been discussed. The focus of this narrative review was laid on clinical presentation, association to the course of COVID-19 disease and treatment options. Skin appendages can be affected by COVID-19 disease beyond COVID-toes, both by symptomatic and asymptomatic course. Telogen effluvium, androgenetic alopecia, and alopecia areata are the most common hair disorders in COVID-19 patients. Nails are less commonly affected by COVID-19 than hair. Splinter hemorrhages and leukonychia are the most frequent findings. While sebaceous glands seem to be uninvolved, SARS-CoV-2 spike proteins have been identified in eccrine sweat glands. Alopecia areata is often seen among asymptomatic COVID-19 patients while telogen effluvium is observed in symptomatic and asymptomatic patients. The half-moon sign on the nails could be a red flag for a more severe course of COVID-19. Treatment options are summarized. Skin appendages are not spared by COVID-19. Their knowledge will help to identify asymptomatic patients and patients at risk for a more severe course of the viral disease.


Subject(s)
Alopecia Areata , COVID-19 , Skin Diseases , Humans , SARS-CoV-2 , Skin , Skin Diseases/diagnosis , Skin Diseases/therapy
3.
J Eur Acad Dermatol Venereol ; 36(11): 2076-2086, 2022 Nov.
Article in English | MEDLINE | ID: mdl-35748102

ABSTRACT

BACKGROUND: The COVID-19 pandemic has raised questions regarding the management of chronic skin diseases, especially in patients on systemic treatments. Data concerning the use of biologics in adults with psoriasis are reassuring, but data specific to children are missing. Moreover, COVID-19 could impact the course of psoriasis in children. OBJECTIVES: The aim of this study was therefore to assess the impact of COVID-19 on the psoriasis of children, and the severity of the infection in relation to systemic treatments. METHODS: We set up an international registry of paediatric psoriasis patients. Children were included if they were under 18 years of age, had a history of psoriasis, or developed it within 1 month of COVID-19 and had COVID-19 with or without symptoms. RESULTS: One hundred and twenty episodes of COVID-19 in 117 children (mean age: 12.4 years) were reported. The main clinical form of psoriasis was plaque type (69.4%). Most children were without systemic treatment (54.2%); 33 (28.3%) were on biologic therapies, and 24 (20%) on non-biologic systemic drugs. COVID-19 was confirmed in 106 children (88.3%) and 3 children had two COVID-19 infections each. COVID-19 was symptomatic for 75 children (62.5%) with a mean duration of 6.5 days, significantly longer for children on non-biologic systemic treatments (P = 0.02) and without systemic treatment (P = 0.006) when compared with children on biologics. The six children who required hospitalization were more frequently under non-biologic systemic treatment when compared with the other children (P = 0.01), and particularly under methotrexate (P = 0.03). After COVID-19, the psoriasis worsened in 17 cases (15.2%). Nine children (8%) developed a psoriasis in the month following COVID-19, mainly a guttate form (P = 0.01). DISCUSSION: Biologics appear to be safe with no increased risk of severe form of COVID-19 in children with psoriasis. COVID-19 was responsible for the development of psoriasis or the worsening of a known psoriasis for some children.


Subject(s)
Biological Products , COVID-19 , Psoriasis , Adolescent , Adult , Biological Factors/therapeutic use , Biological Products/therapeutic use , COVID-19/complications , Child , Disease Progression , Humans , Methotrexate/therapeutic use , Pandemics , Psoriasis/complications , Psoriasis/drug therapy , Psoriasis/epidemiology , Registries
4.
J Econ Entomol ; 115(2): 647-661, 2022 04 13.
Article in English | MEDLINE | ID: mdl-35048980

ABSTRACT

The apple maggot, Rhagoletis pomonella (Walsh), was introduced into the apple-growing regions of the Pacific Northwest in the U.S.A. during the past 60-100 yr. Apple maggot (larvae, puparia, and adults) is difficult to distinguish from its morphologically similar sister species, Rhagoletis zephyria Snow, which is native and abundant in the Pacific Northwest. While morphological identifications are common practice, a simple, inexpensive assay based on genetic differences would be very useful when morphological traits are unclear. Here we report nucleotide substitution and insertion-deletion mutations in the nontranscribed spacer (NTS) of the ribosomal RNA gene cistron of R. pomonella and R. zephyria that appear to be diagnostic for these two fly species. Insertion-deletion variation is substantial and results in a 49 base-pair difference in PCR amplicon size between R. zephyria and R. pomonella that can be scored using agarose gel electrophoresis. PCR amplification and DNA sequencing of 766 bp of the NTS region from 38 R. pomonella individuals and 35 R. zephyria individuals from across their geographic ranges led to the expected PCR fragments of approx. 840 bp and 790 bp, respectively, as did amplification and sequencing of a smaller set of 26 R. pomonella and 16 R. zephyria flies from a sympatric site in Washington State. Conversely, 633 bp mitochondrial COI barcode sequences from this set of flies were polyphyletic with respect to R. pomonella and R. zephyria. Thus, differences in NTS PCR products on agarose gels potentially provide a simple way to distinguish between R. pomonella and R. zephyria.


Subject(s)
Diptera , Malus , Tephritidae , Animals , Larva , Tephritidae/genetics , Washington
7.
Folia Morphol (Warsz) ; 74(2): 236-44, 2015.
Article in English | MEDLINE | ID: mdl-26050813

ABSTRACT

BACKGROUND: The sixth cranial nerve (CN VI) - or the abducens nerve - in humans supplies only the lateral rectus muscle. Due to its topographic conditions, including angulations and fixation points along its course from the brainstem to the lateral rectus muscle, the CN VI is vulnerable to injury. Every case of CN VI palsy requires precise diagnostics, which is facilitated by an understanding of the anatomy. The present article's aims include a detailed study of the intracranial course of the CN VI, determination of occurrence of its particular anatomical variations, as well as presentation of some essential anatomical conditions which may conduce to CN VI palsy. Special emphasis was put on the correlation between craniometric measurements and a particular variation of the CN VI, which complements the data that can be found in literature. MATERIALS AND METHODS: Twenty randomly selected specimens of cadaveric heads fixed in a 10% formalin solution were studied. The study used 40 specimens of the CN VI in order to examine its course variations within the section between the pontomedullary sulcus and the superior orbital fissure. RESULTS: Detailed analysis of the CN VI topography and anatomy in its intracranial course revealed 3 anatomical variations of the nerve in the studied specimens. Variation I, found in 70% of cases, covers those cases in which the CN VI was found to be a single trunk. Those cases in which there was a branching of the CN VI exclusively inside the cavernous sinus were classified as variation II, occurring in 20% of cases. Cases of duplication of the CN VI were classified as variation III, found in 10% of the specimens. In 75% of cases of CN VI duplication one of the nerve trunks ran upwards from the petrosphenoidal ligament, outside Dorello's canal. CONCLUSIONS: The CN VI throughout its intracranial course usually runs as a single trunk, however, common variations include also branching of the nerve in the cavernous sinus or duplication. Topographic relations of the CN VI with adjacent structures account for the risk of injuries which may be caused to the nerve as a result of a disease or surgical procedures.

8.
Bone Marrow Transplant ; 45(11): 1638-44, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20173789

ABSTRACT

The hair follicles of recipients of allogeneic hematopoietic SCT (HSCT) constitute the tissue with the greatest need for regeneration after high-dose chemotherapy. Previous studies have shown a lack of donor-derived DNA in the hair follicles of recipients. Therefore, we carried out a study to determine whether male donor-derived genetic material can be found in female recipients' hair follicles after HSCT. Fluorescent-based PCR with analyses of Y-chromosome STR (Y-STR) and RQ-PCR with the sex-determining region Y (SRY) were used independently to evaluate chimerism status. Our results proved the existence of donor-derived stem DNA in the recipients' hair follicle cells. This report undermines the validity of data indicating that hair follicle cells maintain 100% of recipient origin.


Subject(s)
DNA/genetics , Hair Follicle/physiology , Hematopoietic Stem Cell Transplantation , Transplantation Chimera , Adult , Chromosomes, Human, Y , DNA/analysis , Female , Graft Survival , Hair Follicle/chemistry , Humans , Male , Middle Aged , Polymerase Chain Reaction/methods , Tissue Donors , Young Adult
9.
Rocz Akad Med Bialymst ; 49 Suppl 1: 161-3, 2004.
Article in English | MEDLINE | ID: mdl-15638408

ABSTRACT

Potassium and sodium ion concentrations were estimated by the flame photometry and potentiometry in the vitreous fluid of isolated porcine eyeballs at time of death and of eyeballs, stored at temperature of 6-8 degrees C during post-mortem intervals: 4, 28, 52, 75, 100, 124 and 148 hours. The increase of K+ concentration and decrease of Na+ concentration were proportional to the increasing post-mortem time intervals. The results of the potentiometric measurements of K+ and sodium ion concentrations were significantly lower, as compared to those after flame photometry. In all the vitreous fluid smears after 124 and 148 hours, gram (-) bacteria were found. Our results suggest that bacterial infection participates in the variability of K+ levels. The influence of bacterial infection on the margin of error for the K+ post-mortem test remains unanswered and needs further studies.


Subject(s)
Potassium/analysis , Sodium/analysis , Vitreous Body/chemistry , Animals , Photometry/methods , Postmortem Changes , Potentiometry/methods , Swine
10.
Folia Histochem Cytobiol ; 40(2): 211-2, 2002.
Article in English | MEDLINE | ID: mdl-12056650

ABSTRACT

The structure of epidermis and appearance of keratinocytes is described in intact skin specimens from human corpses stored after death under refrigeration. Two groups of alterations can be identified depending on the epidermal layer. In the spinous layer, the cells are characterized by crescent-shaped nuclei surrounded by a hollow area. The number of such cells increases significantly each day during the first 8 days post mortem (dpm), and their frequencies follow respective regression equations, so as to enable the post mortem time estimation with one day accuracy. In the basal layer, distorted, balloon-shaped cells with pycnotic nuclei appear, which with the lapse of time are forming groups, and eventually the epidermis in those places separates from the dermis. The presence of both described changes seems to indicate whether the skin sample was obtained from the living organism or after the death.


Subject(s)
Epidermal Cells , Epidermis/physiology , Postmortem Changes , Adolescent , Adult , Aged , Cell Size , Female , Humans , Male , Middle Aged , Staining and Labeling
11.
Biochemistry ; 40(35): 10578-85, 2001 Sep 04.
Article in English | MEDLINE | ID: mdl-11524000

ABSTRACT

The ligand-binding dynamics and the reaction with O(2) of the fully (five-electron) reduced cytochrome caa(3) from the thermohalophilic bacterium Rhodothermus (R.) marinus were investigated. The enzyme is a proton pump which has all the residues of the proton-transfer pathways found in the mitochondrial-like enzymes conserved, except for one of the key elements of the D-pathway, the helix-VI glutamate [Glu(I-286), R. sphaeroides numbering]. In contrast to what has been suggested previously as general characteristics of thermophilic enzymes, during formation of the R. marinus caa(3)-CO complex, CO binds weakly to Cu(B), and is rapidly (k(Ba) = 450 s(-1)) trapped by irreversible (K(Ba) = 4.5 x 10(3)) binding to heme a(3). Upon reaction of the fully reduced enzyme with O(2), four kinetic phases were resolved during the first 10 ms after initiation of the reaction. On the basis of a comparison to reactions observed with the bovine enzyme, these phases were attributed to the following transitions between intermediates (pH 7.8, 1 mM O(2)): R --> A (tau congruent with 8 micros), A --> P(r) (tau congruent with 35 micros), P(r) --> F (tau congruent with 240 micros), F --> O (tau congruent with 2.5 ms), where the last two phases were associated with proton uptake from the bulk solution. Oxidation of heme c was observed only during the last two reaction steps. The slower transition times as compared to those observed with the bovine enzyme most likely reflect the replacement of Glu(I-286) of the helix-VI motif -XGHPEV- by a tyrosine in the R. marinus enzyme in the motif -YSHPXV-. The presence of an additional, fifth electron in the enzyme was reflected by two additional kinetic phases with time constants of approximately 20 and approximately 720 ms during which the fifth electron reequilibrated within the enzyme.


Subject(s)
Cytochrome c Group/metabolism , Cytochromes a3 , Cytochromes a , Gram-Negative Aerobic Bacteria/metabolism , Carbon Monoxide/metabolism , Cytochrome c Group/isolation & purification , Electron Transport , Ligands , Oxygen/metabolism , Photolysis
12.
Methods ; 24(2): 139-52, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11384189

ABSTRACT

Biochemical reactions involving electron transfer between substrates or enzyme cofactors are both common and physiologically important; they have been studied by means of a variety of techniques. In this paper we review the application of photochemical methods to the study of intramolecular electron transfer in hemoproteins, thus selecting a small, well-defined sector of this otherwise enormous field. Photoexcitation of the heme populates short-lived excited states which decay by thermal conversion and do not usually transfer electrons, even when a suitable electron acceptor is readily available, e.g., in the form of a second oxidized heme group in the same protein; because of this, the experimental setup demands some manipulation of the hemoprotein. In this paper we review three approaches that have been studied in detail: (i) the covalent conjugation to the protein moiety of an organic ruthenium complex, which serves as the photoexcitable electron donor (in this case the heme acts as the electron acceptor); (ii) the replacement of the heme group with a phosphorescent metal-substituted porphyrin, which on photoexcitation populates long-lived excited states, capable of acting as electron donors (clearly the protein must contain some other cofactor acting as the electron acceptor, most often a second heme group in the oxidized state); (iii) the combination of the reduced heme with CO (the photochemical breakdown of the iron-CO bond yields transiently the ground-state reduced heme which is able to transfer one electron (or a fraction of it) to an oxidized electron acceptor in the protein; this method uses a "mixed-valence hybrid" state of the redox active hemoprotein and has the great advantage of populating on photoexcitation an electron donor at physiological redox potential).


Subject(s)
Biophysics/methods , Electron Transport , Light , Photochemistry/methods , Cytochrome c Group/chemistry , Electron Transport Complex IV/chemistry , Electrons , Heme/chemistry , Kinetics , Ligands , Models, Chemical , Nitrite Reductases/chemistry , Oxidation-Reduction , Ruthenium/chemistry , Thermodynamics , Time Factors , Zinc/chemistry
13.
Folia Histochem Cytobiol ; 39(2): 227-8, 2001.
Article in English | MEDLINE | ID: mdl-11374838

ABSTRACT

Rat skin mast cell (MC) number and density change due to the postmortem storage of the material at 6-8 degrees C during a 19-day period. Both the number and the density of the MC in the 200 microm thick subepidermal layer decreased with the square of the time (p > or = 0.99). The count and the density may be used interchangeably in topographic studies of the rat MC.


Subject(s)
Mast Cells/physiology , Postmortem Changes , Skin/cytology , Animals , Cell Count , Coloring Agents , Male , Rats , Rats, Inbred Lew
14.
Folia Histochem Cytobiol ; 39(2): 225-6, 2001.
Article in English | MEDLINE | ID: mdl-11374837

ABSTRACT

PCNA-positive nuclei (nPCNA+) in the basal layer of rat epidermis were assessed in the period of 0-19 days after death. The PCNA+ nuclei were present in this layer up to 12th day. The decrease in PCNA+ nuclei ratio was highly correlated with the time and followed the equation y = a + b square root(x) (y = nPCNA fraction, x = time post mortem).


Subject(s)
Postmortem Changes , Proliferating Cell Nuclear Antigen/metabolism , Skin/cytology , Animals , Cell Count , Coloring Agents , Male , Rats , Rats, Inbred Lew
15.
FEBS Lett ; 494(3): 157-60, 2001 Apr 13.
Article in English | MEDLINE | ID: mdl-11311232

ABSTRACT

Cytochrome c oxidase is a membrane-bound enzyme that catalyses the reduction of O2 to H2O and uses part of the energy released in this reaction to pump protons across the membrane. We have investigated the effect of addition of Zn2+ on the kinetics of two reaction steps in cytochrome c oxidase that are associated with proton pumping; the peroxy to oxo-ferryl (P(r)-->F) and the oxo-ferryl to oxidised (F-->O) transitions. The Zn2+ binding resulted in a decrease of the F-->O rate from 820 s(-1) (no Zn2+) to a saturating value of approximately 360 s(-1) with an apparent K(D) of approximately 2.6 microM. The P(r)-->F rate (approximately 10[(4) s(-1)] before addition of Zn2+) decreased more slowly with increasing Zn2+ concentration and a K(D) of approximately 120 microM was observed. The effects on both kinetic phases were fully reversible upon addition of EDTA. Since both the P(r)-->F and F-->O transitions are associated with proton uptake through the D-pathway, a Zn2+-binding site is likely to be located at the entry point of this pathway, where several carboxylates and histidine residues are found that may co-ordinate Zn2+.


Subject(s)
Electron Transport Complex IV/metabolism , Oxidants/antagonists & inhibitors , Oxygen/metabolism , Rhodobacter sphaeroides/enzymology , Zinc/pharmacology , Binding Sites , Catalysis/drug effects , Cations, Divalent/metabolism , Cations, Divalent/pharmacology , Electron Transport Complex IV/antagonists & inhibitors , Electron Transport Complex IV/chemistry , Histidine/metabolism , Kinetics , Oxidants/metabolism , Oxygen/antagonists & inhibitors , Protein Conformation , Protons , Zinc/metabolism
16.
Proc Natl Acad Sci U S A ; 98(9): 5013-8, 2001 Apr 24.
Article in English | MEDLINE | ID: mdl-11296255

ABSTRACT

Cytochrome c oxidase is a membrane-bound enzyme that catalyzes the four-electron reduction of oxygen to water. This highly exergonic reaction drives proton pumping across the membrane. One of the key questions associated with the function of cytochrome c oxidase is how the transfer of electrons and protons is coupled and how proton transfer is controlled by the enzyme. In this study we focus on the function of one of the proton transfer pathways of the R. sphaeroides enzyme, the so-called K-proton transfer pathway (containing a highly conserved Lys(I-362) residue), leading from the protein surface to the catalytic site. We have investigated the kinetics of the reaction of the reduced enzyme with oxygen in mutants of the enzyme in which a residue [Ser(I-299)] near the entry point of the pathway was modified with the use of site-directed mutagenesis. The results show that during the initial steps of oxygen reduction, electron transfer to the catalytic site (to form the "peroxy" state, P(r)) requires charge compensation through the proton pathway, but no proton uptake from the bulk solution. The charge compensation is proposed to involve a movement of the K(I-362) side chain toward the binuclear center. Thus, in contrast to what has been assumed previously, the results indicate that the K-pathway is used during oxygen reduction and that K(I-362) is charged at pH approximately 7.5. The movement of the Lys is proposed to regulate proton transfer by "shutting off" the protonic connectivity through the K-pathway after initiation of the O(2) reduction chemistry. This "shutoff" prevents a short-circuit of the proton-pumping machinery of the enzyme during the subsequent reaction steps.


Subject(s)
Electron Transport Complex IV/metabolism , Rhodobacter sphaeroides/enzymology , Amino Acid Substitution/genetics , Binding Sites , Biological Transport , Electron Transport , Electron Transport Complex IV/chemistry , Electron Transport Complex IV/genetics , Electrons , Heme/analogs & derivatives , Heme/metabolism , Hydrogen Bonding , Lysine/metabolism , Models, Molecular , Mutation/genetics , Oxygen/chemistry , Oxygen/metabolism , Photolysis , Protein Conformation , Protons , Rhodobacter sphaeroides/genetics , Spectrum Analysis , Static Electricity
17.
Biochim Biophys Acta ; 1503(3): 261-70, 2001 Jan 19.
Article in English | MEDLINE | ID: mdl-11115638

ABSTRACT

Acidianus ambivalens is a hyperthermoacidophilic archaeon which grows optimally at approximately 80 degrees C and pH 2.5. The terminal oxidase of its respiratory system is a membrane-bound quinol oxidase (cytochrome aa(3)) which belongs to the heme-copper oxidase superfamily. One difference between this quinol oxidase and a majority of the other members of this family is that it lacks the highly-conserved glutamate (Glu(I-286), E. coli ubiquinol oxidase numbering) which has been shown to play a central role in controlling the proton transfer during reaction of reduced oxidases with oxygen. In this study we have investigated the dynamics of the reaction of the reduced A. ambivalens quinol oxidase with O(2). With the purified enzyme, two kinetic phases were observed with rate constants of 1.8&z.ccirf;10(4) s(-1) (at 1 mM O(2), pH 7.8) and 3. 7x10(3) s(-1), respectively. The first phase is attributed to binding of O(2) to heme a(3) and oxidation of both hemes forming the 'peroxy' intermediate. The second phase was associated with proton uptake from solution and it is attributed to formation of the 'oxo-ferryl' state, the final state in the absence of quinol. In the presence of bound caldariella quinol (QH(2)), heme a was re-reduced by QH(2) with a rate of 670 s(-1), followed by transfer of the fourth electron to the binuclear center with a rate of 50 s(-1). Thus, the results indicate that the quinol donates electrons to heme a, followed by intramolecular transfer to the binuclear center. Moreover, the overall electron and proton-transfer kinetics in the A. ambivalens quinol oxidase are the same as those in the E. coli ubiquinol oxidase, which indicates that in the A. ambivalens enzyme a different pathway is used for proton transfer to the binuclear center and/or other protonatable groups in an equivalent pathway are involved. Potential candidates in that pathway are two glutamates at positions (I-80) and (I-83) in the A. ambivalens enzyme (corresponding to Met(I-116) and Val(I-119), respectively, in E. coli cytochrome bo(3)).


Subject(s)
Archaea/enzymology , Electron Transport Complex IV/chemistry , Oxygen/chemistry , Electron Transport , Electron Transport Complex IV/metabolism , Glutamic Acid/chemistry , Kinetics , Oxidation-Reduction , Protons
18.
Biochemistry ; 39(51): 15847-50, 2000 Dec 26.
Article in English | MEDLINE | ID: mdl-11123910

ABSTRACT

One of the putative proton-transfer pathways leading from solution toward the binuclear center in many cytochrome c oxidases is the D-pathway, so-called because it starts with a highly conserved aspartate [D(I-132)] residue. Another highly conserved amino acid residue in this pathway, glutamate(I-286), has been indicated to play a central role in the proton-pumping machinery of mitochondrial-type enzymes, a role that requires a movement of the side chain between two distinct positions. In the present work we have relocated the glutamate to the opposite side of the proton-transfer pathway by constructing the double mutant EA(I-286)/IE(I-112). This places the side chain in about the same position in space as in the original enzyme, but does not allow for the same type of movement. The results show that the introduction of the second-site mutation, IE(I-112), in the EA(I-286) mutant enzyme results in an increase of the enzyme activity by a factor of >10. In addition, the double mutant enzyme pumps approximately 0.4 proton per electron. This observation restricts the number of possible mechanisms for the operation of the redox-driven proton pump. The proton-pumping machinery evidently does require the presence of a protonatable/polar residue at a specific location in space, presumably to stabilize an intact water chain. However, this residue does not necessarily have to be at a strictly conserved location in the amino acid sequence. In addition, the results indicate that E(I-286) is not the "proton gate" of cytochrome c oxidase controlling the flow of pumped protons from one to the other side of the membrane.


Subject(s)
Electron Transport Complex IV/chemistry , Electron Transport Complex IV/genetics , Glutamic Acid/chemistry , Glutamic Acid/genetics , Mutagenesis, Site-Directed , Proton Pumps/chemistry , Proton Pumps/genetics , Catalysis , Electron Transport Complex IV/metabolism , Glutamic Acid/metabolism , Mitochondria/enzymology , Proton Pumps/metabolism , Recombinant Proteins/chemical synthesis , Recombinant Proteins/metabolism , Rhodobacter sphaeroides/enzymology
19.
Biochemistry ; 39(47): 14664-9, 2000 Nov 28.
Article in English | MEDLINE | ID: mdl-11087423

ABSTRACT

When dioxygen is reduced to water by cytochrome c oxidase a sequence of oxygen intermediates are formed at the reaction site. One of these intermediates is called the "peroxy" (P) intermediate. It can be formed by reacting the two-electron reduced (mixed-valence) cytochrome c oxidase with dioxygen (called P(m)), but it is also formed transiently during the reaction of the fully reduced enzyme with oxygen (called P(r)). In recent years, evidence has accumulated to suggest that the O-O bond is cleaved in the P intermediate and that the heme a(3) iron is in the oxo-ferryl state. In this study, we have investigated the kinetic and thermodynamic parameters for formation of P(m) and P(r), respectively, in the Rhodobacter sphaeroides enzyme. The rate constants and activation energies for the formation of the P(r) and P(m) intermediates were 1.4 x 10(4) s(-1) ( approximately 20 kJ/mol) and 3 x 10(3) s(-1) ( approximately 24 kJ/mol), respectively. The formation rates of both P intermediates were independent of pH in the range 6.5-9, and there was no proton uptake from solution during P formation. Nevertheless, formation of both P(m) and P(r) were slowed by a factor of 1.4-1.9 in D(2)O, which suggests that transfer of an internal proton or hydrogen atom is involved in the rate-limiting step of P formation. We discuss the origin of the difference in the formation rates of the P(m) and P(r) intermediates, the formation mechanisms of P(m)/P(r), and the involvement of these intermediates in proton pumping.


Subject(s)
Electron Transport Complex IV/metabolism , Oxygen/metabolism , Protons , Carbon Monoxide/chemistry , Carbon Monoxide/metabolism , Electron Transport , Electron Transport Complex IV/chemistry , Entropy , Ferrous Compounds/chemistry , Ferrous Compounds/metabolism , Heme/chemistry , Heme/metabolism , Kinetics , Oxidation-Reduction , Oxygen/chemistry , Photolysis , Rhodobacter sphaeroides/enzymology , Solutions
20.
Biochemistry ; 39(36): 10967-74, 2000 Sep 12.
Article in English | MEDLINE | ID: mdl-10998233

ABSTRACT

We have investigated dynamic events after flash photolysis of CO from reduced cytochrome cd(1) nitrite reductase (NiR) from Paracoccus pantotrophus (formerly Thiosphaera pantotropha). Upon pulsed illumination of the cytochrome cd(1)-CO complex, at 460 nm, a rapid (<50 ns) absorbance change, attributed to dissociation of CO, was observed. This was followed by a biphasic rearrangement with rate constants of 1.7 x 10(4) and 2.5 x 10(3) s(-1) at pH 8.0. Both parts of the biphasic rearrangement phases displayed the same kinetic difference spectrum in the region of 400-660 nm. The slower of the two processes was accompanied by proton uptake from solution (0.5 proton per active site at pH 7.5-8.5). After photodissociation, the CO ligand recombined at a rate of 12 s(-1) (at 1 mM CO and pH 8.0), accompanied by proton release. The crystal structure of reduced cytochrome cd(1) in complex with CO was determined to a resolution of 1.57 A. The structure shows that CO binds to the iron of the d(1) heme in the active site. The ligation of the c heme is unchanged in the complex. A comparison of the structures of the reduced, unligated NiR and the NiR-CO complex indicates changes in the puckering of the d(1) heme as well as rearrangements in the hydrogen-bonding network and solvent organization in the substrate binding pocket at the d(1) heme. Since the CO ligand binds to heme d(1) and there are structural changes in the d(1) pocket upon CO binding, it is likely that the proton uptake or release observed after flash-induced CO dissociation is due to changes of the protonation state of groups in the active site. Such proton-coupled structural changes associated with ligand binding are likely to affect the redox potential of heme d(1) and may regulate the internal electron transfer from heme c to heme d(1).


Subject(s)
Carbon Monoxide/chemistry , Cytochromes/chemistry , Nitrite Reductases/chemistry , Photolysis , Protons , Binding Sites , Carbon Monoxide/metabolism , Crystallography, X-Ray , Cytochrome c Group , Cytochromes/metabolism , Electron Transport , Heme/chemistry , Heme/metabolism , Kinetics , Ligands , Models, Molecular , Nitrite Reductases/metabolism , Oxidation-Reduction , Paracoccus/enzymology , Solutions
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