Pelagic and benthic communities of the Antarctic ecosystem of Potter Cove: Genomics and ecological implications.

Molecular technologies are more frequently applied in Antarctic ecosystem research and the growing amount of sequence-based information available in databases adds a new dimension to understanding the response of Antarctic organisms and communities to environmental change. We apply molecular techniques, including fingerprinting, and amplicon and metagenome sequencing, to understand biodiversity and phylogeography to resolve adaptive processes in an Antarctic coastal ecosystem from microbial to macrobenthic organisms and communities. Interpretation of the molecular data is not only achieved by their combination with classical methods (pigment analyses or microscopy), but furthermore by combining molecular with environmental data (e.g., sediment characteristics, biogeochemistry or oceanography) in space and over time. The studies form part of a long-term ecosystem investigation in Potter Cove on King-George Island, Antarctica, in which we follow the effects of rapid retreat of the local glacier on the cove ecosystem. We formulate and encourage new approaches to integrate molecular tools into Antarctic ecosystem research, environmental conservation actions, and polar ocean observatories.

Excessive irradiance and antioxidant responses of an Antarctic marine diatom exposed to iron limitation and to dynamic irradiance.

The synergistic effects of iron limitation and irradiance dynamics on growth, photosynthesis, antioxidant activity and excessive PAR (400-700 nm) and UV (280-400 nm) sensitivity were investigated for the Antarctic marine diatom Chaetoceros brevis. Iron-limited and iron-replete cultures were exposed to identical daily irradiance levels, supplied as dynamic (20-1350 micromol m(-2) s(-1)) and constant (260 micromol m(-2) s(-1)) irradiance. After acclimation, growth, maximal quantum yield of PSII (F(v)/F(m)), pigment composition, and the activities of the antioxidant enzymes superoxide dismutase (SOD), ascorbate peroxidase (APX) and glutathione reductase (GR) were determined. Then, excessive irradiance sensitivity was assessed by monitoring pigment composition, F(v)/F(m) and viability loss during a single excessive PAR and UV treatment. Iron limitation reduced growth rates, F(v)/F(m) dynamics, and cellular pigments pools. Cellular pigment concentrations were higher under dynamic irradiance than under constant irradiance but this difference was less pronounced under iron limitation compared to iron-replete conditions. SOD and APX activities increased during dynamic irradiance under iron limitation, suggesting increased radical formation around PSII. Despite these physiological differences, no effects on growth were observed between constant and dynamic irradiance cultivation in iron-limited and iron-replete cells. The applied culturing conditions did not affect glutathione reductase activity in C. brevis. F(v)/F(m) and xanthophyll de-epoxidation dynamics during excessive irradiance were not different for iron-limited and replete cells and viability loss was not found during excessive irradiance. This study revealed photoacclimation differences between iron-limited and iron-replete C. brevis cultures that did not affect growth rates and excessive irradiance sensitivity after acclimation to constant and dynamic irradiance.

Diel patterns of UVBR-induced DNA damage in picoplankton size fractions from the Gulf of Aqaba, Red Sea.

This study focuses on the impact of natural levels of UVBR (ultraviolet-B radiation: 280 to 315 nm) on bacterio- and phytoplankton (<10 microm) from the Gulf of Aqaba, Red Sea. Incident biologically effective doses (BEDs) and attenuation of biologically effective radiation in the water column were measured using a DNA biodosimeter. UVBR-induced DNA damage was measured as cyclobutane pyrimidine dimers (CPDs), using an antibody directed to CPDs followed by chemiluminescent detection. Depth profiles of DNA damage were determined in two plankton size fractions (0.2 to 0.8 microm and 0.8 to 10 microm) collected down to 50 m depth. Furthermore, accumulation and removal of CPDs were monitored in surface plankton samples during several daily cycles. Small plankton (plankton <10 microm) composition was determined by flow cytometry. The plankton community in the Gulf of Aqaba was dominated by nonphototrophic bacteria and the free-living prochlorophyte Prochlorococcus spp. (<0.8 microm). In general, no DNA damage could be detected in dosimeter DNA below 15 m. In contrast, DNA damage (up to 124 CPD Mnucl-1) could be detected in all bacterio- and phytoplankton samples. DNA damage accumulated throughout the day, indicating that plankton in the Gulf of Aqaba undergo UVBR stress via CPD induction. Although the numbers of CPDs decreased during darkness, both size fractions showed some residual DNA damage at the end of the night. This suggests that dark repair processes did not remove all CPDs, or that part of the plankton community was incapable of repair at all. CPD levels in the two size fractions showed no significant differences in situ. During full solar radiation exposures (samples incubated in bags), more CPDs were detected in the smaller (0.2 to 0.8 microm) size fraction as compared to the larger (0.8 to 10 microm) size fraction. In these experiments, initial plankton composition was significantly different from the field samples. This implies that a shift in the population structure or irradiance conditions can lead to a significant change in UVBR sensitivity. In conclusion, the results show that the picoplankton-dominated phyto- and bacterioplankton communities in the clear surface waters from the Gulf of Aqaba undergo UVBR stress. Repair pathways are not sufficient to eliminate damage during or after UVBR exposure hours, suggesting photomortality as a potential loss parameter of the plankton community.