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1.
J Dairy Sci ; 2024 Jun 12.
Article in English | MEDLINE | ID: mdl-38876215

ABSTRACT

Feed efficiency is important for economic profitability of dairy farms; however, recording daily dry matter intakes (DMI) is expensive. Our objective was to investigate the potential use of milk mid-infrared (MIR) spectral data to predict proxy phenotypes for DMI based on different cross-validation schemes. We were specifically interested in comparisons between a model that included only MIR data (Model M1), a model that incorporated different energy sink predictors, such as body weight, body weight change, and milk energy (Model M2), and an extended model that incorporated both energy sinks and MIR data (Model M3). Models M2 and M3 also included various cow level variables (stage of lactation, age at calving, parity) such that any improvement in model performance from M2 to M3, whether through a smaller root mean squared error (RMSE) or a greater squared predictive correlation (R2), could indicate a potential benefit of MIR to predict residual feed intake. The data used in our study originated from a multi-institutional project on the genetics of feed efficiency in US Holsteins. Analyses were conducted on 2 different trait definitions based on different period lengths: averaged across weeks vs. averaged across 28-d. Specifically, there were 19,942 weekly records on 1,812 cows across 46 experiments or cohorts and 3,724 28-d records on 1,700 cows across 43 different cohorts. The cross-validation analyses involved 3 different k-fold schemes. First, a 10-fold cow-independent cross-validation was conducted whereby all records from any one cow were kept together in either training or test sets. Similarly, a 10-fold experiment-independent cross-validation kept entire experiments together whereas a 4-fold herd-independent cross-validation kept entire herds together in either training or test sets. Based on cow-independent cross-validation for both weekly and 28-d DMI, adding MIR predictors to energy sinks (Models M3 vs M2) significantly (P < 10-10) reduced average RMSE to 1.59 kg and increased average R2 to 0.89. However, adding MIR to energy sinks (M3) to predict DMI either within an experiment-independent or herd-independent cross-validation scheme seemed to demonstrate no merit (P > 0.05) compared with an energy sink model (M2) for either R2 or RMSE (respectively, 0.68 and 2.55 kg for M2 in herd-independent scheme). We further noted that with broader cross-validation schemes, i.e., from cow-independent to experiment-independent to herd-independent schemes, the mean and slope bias increased. Given that proxy DMI phenotypes for cows would need to be almost entirely generated in herds having no DMI or training data of their own, herd-independent cross-validation assessments of predictive performance should be emphasized. Hence, more research on predictive algorithms suitable for broader cross-validation schemes and a more earnest effort on calibration of spectrophotometers against each other should be considered.

2.
J Dairy Sci ; 106(12): 9095-9104, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37678782

ABSTRACT

The use of milk Fourier transform mid-infrared (FT-MIR) spectrometry to develop management and breeding tools for dairy farmers and industry is growing and supported by the availability of numerous new predicted phenotypes to assess the nutritional quality of milk and its technological properties, but also the animal health and welfare status and its environmental fingerprint. For genetic evaluations, having a long-term and representative spectral dairy herd improvement (DHI) database improves the reliabilities of estimated breeding values (EBV) from these phenotypes. Unfortunately, most of the time, the raw spectral data used to generate these estimations are not stored. Moreover, many reference measurements of those phenotypes, needed during the FT-MIR calibration step, are available from past research activities but lack spectra records. So, it is impossible to use them to improve the FT-MIR models. Consequently, there is a strong interest in imputing those missing spectra. The innovative objective of this study was to use the existing large spectral DHI database to estimate missing spectra by selecting probable spectra using, as the match criteria, common dairy traits recorded for a long time by DHI organizations. We tested 4 match criteria combinations. Combination 1 required to have equal fat and protein contents between the sample for which a spectrum was to be estimated and the reference samples in the DHI database. Combination 2 also required an equal urea content. Combination 3 requested equal fat, protein, and lactose contents. Finally, combination 4 included all criteria. When more than one spectrum was found during the search, their average was the estimated spectrum for the query sample. Concretely, this study estimated missing spectra for 1,700 samples using 2,000,000 spectral DHI records. For assessing the effect of this spectral estimation on the prediction quality, FT-MIR equations were used to predict 11 phenotypes, selected as their quantification used different FT-MIR regions. They were related to the milk fat and mineral composition, lactoferrin content, quantity of eructed methane, body weight (BW), and dry matter intake. The accuracy between predictions obtained from actual and estimated spectra was evaluated by calculating the mean absolute error (MAE). The criteria in the fourth and second combinations were too strict to estimate a spectrum for most samples. Indeed, for many samples, no spectra with the same values for those matching criteria was found. The third match criteria combination had a poorer prediction performance for all studied traits and spectral absorptions than the first combination due to fewer matched samples available to compute the missing spectrum. By allowing a range for matching lactose content (±0.1 g/dL milk), we showed that this new combination increased the number of selected samples to compute missing spectra and predict better the infrared absorption at different wavenumbers, especially those related to the lactose quantification. The prediction performance was further improved by performing queries on the entire Walloon DHI spectral database (6,625,570 spectra), and it varied among the studied phenotypes. Without considering the traits used for the matching, the best predictions were obtained for the content of saturated fatty acids (MAE = 0.15 g/dL milk) and BW (MAE = 12.80 kg). Yet, the predictions for the unsaturated fatty acids were less accurate (MAE = 0.13 and 0.018 g/dL milk for monounsaturated and polyunsaturated fatty acids), likely because of the poorer predictions of spectral regions related to long-chain fatty acids. Similarly, poorer predictions were observed for the amount of methane eructed by dairy cows (MAE = 47.02 g/d), likely because it is not directly related to fat content or composition. Prediction accuracies for the remaining traits were also low. In conclusion, we observed that increasing the number of relevant matching criteria helps improve the quality of FT-MIR predicted phenotypes and the number of spectra used during the search. So, it would be of great interest to test in the future the suitability of the developed methodology with large-scale international spectral databases to improve the reliability of EBV from these FT-MIR-based phenotypes and the robustness of FT-MIR predictive models.


Subject(s)
Lactose , Milk , Cattle , Female , Animals , Milk/chemistry , Fourier Analysis , Lactose/analysis , Reproducibility of Results , Spectrophotometry, Infrared/veterinary , Fatty Acids/analysis , Methane/analysis , Lactation
3.
J Dairy Sci ; 105(7): 5954-5971, 2022 Jul.
Article in English | MEDLINE | ID: mdl-35636997

ABSTRACT

Residual feed intake (RFI) and feed saved (FS) are important feed efficiency traits that have been increasingly considered in genetic improvement programs. Future sustainability of these genetic evaluations will depend upon greater flexibility to accommodate sparsely recorded dry matter intake (DMI) records on many more cows, especially from commercial environments. Recent multiple-trait random regression (MTRR) modeling developments have facilitated days in milk (DIM)-specific inferences on RFI and FS, particularly in modeling the effect of change in metabolic body weight (MBW). The MTRR analyses, using daily data on the core traits of DMI, MBW, and milk energy (MilkE), were conducted separately for 2,532 primiparous and 2,379 multiparous US Holstein cows from 50 to 200 DIM. Estimated MTRR variance components were used to derive genetic RFI and FS and DIM-specific genetic partial regressions of DMI on MBW, MilkE, and change in MBW. Estimated daily heritabilities of RFI and FS varied across lactation for both primiparous (0.05-0.07 and 0.11-0.17, respectively) and multiparous (0.03-0.13 and 0.10-0.17, respectively) cows. Genetic correlations of RFI across DIM varied (>0.05) widely compared with FS (>0.54) within either parity class. Heritability estimates based on average lactation-wise measures were substantially larger than daily heritabilities, ranging from 0.17 to 0.25 for RFI and from 0.35 to 0.41 for FS. The partial genetic regression coefficients of DMI on MBW (0.11 to 0.16 kg/kg0.75 for primiparous and 0.12 to 0.14 kg/kg0.75 for multiparous cows) and of DMI on MilkE (0.45 to 0.68 kg/Mcal for primiparous and 0.36 to 0.61 kg/Mcal for multiparous cows) also varied across lactation. In spite of the computational challenges encountered with MTRR, the model potentially facilitates an efficient strategy for harnessing more data involving a wide variety of data recording scenarios for genetic evaluations on feed efficiency.


Subject(s)
Lactation , Milk , Animal Feed/analysis , Animals , Body Weight/genetics , Cattle/genetics , Eating/genetics , Female , Lactation/genetics , Milk/metabolism , Phenotype , Pregnancy
4.
Bioelectromagnetics ; 28(6): 471-6, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17492762

ABSTRACT

Thirty-two pregnant Holstein heifers weighing 499 +/- 45 kg, at 3.1 +/- .7 months of gestation and 21 +/- 2.0 months of age were confined and exposed to 30 microT magnetic fields (MFs) and a 12 h light/12 h dark light cycle. The heifers were divided into two replicates of 16 animals. Each replicate was divided into two groups of eight animals each, one group the non-exposed and the second, the exposed group. The animals were subjected to the different treatments for 4 weeks. After 4 weeks, the animals switched treatment, the exposed group becoming the non-exposed group and vice versa. Then the treatment continued for 4 more weeks. Catheters were inserted into the jugular vein, and blood samples were collected twice a week to estimate the concentration of progesterone (P4), melatonin (MLT), prolactin (PRL), and insulin-like growth factor 1 (IGF-1). Feed consumption was measured daily. The results indicated that exposure of pregnant heifers to MF similar to those encountered underneath a 735 kV high tension electrical power line for 20 h/day during a period of 4 weeks produces slight effects. This is evidenced by statistically significant higher body weight (1.2%), higher weekly body weight gain (30%), and decreases in the concentration of PRL (15%) and IGF-1 (4%) in blood serum. The absence of abnormal clinical signs and the absolute magnitude of the significant changes detected during MF exposure, make it plausible to preclude any major animal health hazard.


Subject(s)
Electromagnetic Fields , Hormones/blood , Maternal Exposure , Pregnancy, Animal/blood , Pregnancy, Animal/radiation effects , Animals , Cattle , Dairying , Dose-Response Relationship, Radiation , Female , Pregnancy , Radiation Dosage
5.
Bioelectromagnetics ; 25(7): 508-15, 2004 Oct.
Article in English | MEDLINE | ID: mdl-15376244

ABSTRACT

Two experiments were conducted to test the hypothesis that electric and magnetic field (EMF) exposure may result in endocrine responses similar to those observed in animals exposed to long days. In the first experiment, 16 lactating, pregnant Holstein cows were assigned to two replicates according to a crossover design with treatment switchback. All animals were confined to wooden metabolic cages and maintained under short day photoperiods (8 h light/16 h dark). Treated animals were exposed to a vertical electric field of 10 kV/m and a horizontal magnetic field of 30 microT (EMF) for 16 h/day for 4 weeks. In a second, similar experiment, 16 nonlactating, nonpregnant Holstein cows subjected to short days were exposed to EMF, using a similar protocol, for periods corresponding to the duration of one estrous cycle. In the first experiment, circulating MLT concentrations during the light period showed a small numerical decrease during EMF exposure (P < .05). Least-square means for the 8 h light period were 9.9 versus 12.4 pg/ml, SE = 1.3. Melatonin concentrations during the dark period were not affected by the treatment. A similar trend was observed in the second experiment, where MLT concentrations during the light period tended to be lower (8.8 pg/ml vs. 16.3 pg/ml, P < .06) in the EMF exposed group, and no effects were observed during the dark period. Plasma prolactin (PRL) was increased in the EMF exposed group (16.6 vs. 12.7 ng/ml, P < .02) in the first experiment. In the second experiment, the overall PRL concentrations found were lower, and the mean plasma PRL concentration was not affected by treatment. These experiments provide evidence that EMF exposure may modify the response of dairy cows to photoperiod.


Subject(s)
Electromagnetic Fields , Melatonin/radiation effects , Photoperiod , Prolactin/radiation effects , Animals , Cattle , Cross-Over Studies , Darkness , Electricity , Environmental Exposure , Estrous Cycle , Female , Lactation , Magnetics , Melatonin/blood , Pregnancy , Prolactin/blood , Random Allocation
6.
Bioelectromagnetics ; 25(4): 308-12, 2004 May.
Article in English | MEDLINE | ID: mdl-15114640

ABSTRACT

Sixteen pregnant Holstein heifers weighing 521 +/- 46 kg, at 3.3 +/- 0.7 months of gestation and 2.2 +/- 2.0 months of age were confined to wooden metabolism cages and were exposed to a vertical electric field (EF) of 10.0 +/- 0.4 kV/m and an artificial light cycle of 12 h light-12 h dark. The heifers were divided into two replicates of eight each. Each replicate was divided into two groups of four animals each, one group becoming the non-exposed and the second, the EF exposed group. The exposed group were housed in metabolism cages in an area where EF were generated, and the non-exposed group, in metabolism cages located in the adjacent area where the EF was less than 2% of that present in the exposed area. The test animals were subject to the different treatments for 4 weeks continuously. After 4 weeks, the animals switched treatment, the exposed group becoming the non-exposed group and vice-versa. Then the treatment continued for 4 more weeks. Catheters were inserted into the jugular vein of the animals, and blood samples were collected on twice a week to estimate the serum concentration of progesterone (P4), melatonin (MLT), prolactin (PRL), and insulin-like growth factor-1 (IGF-1). Feed consumption was measured daily and feed samples were collected twice a week. The results indicated that exposure of dairy cattle to EF similar to those encountered directly underneath a 735 kV high tension electrical power line carrying a maximum load of current, cannot be associated with any variation in the experimental variables mentioned above. An exception to this, is the variation in MLT, which was associated with the EF exposure. Due to the inconsistency of the MLT response in the different replicates, caution should be exercised in the interpretation of this phenomenon.


Subject(s)
Electromagnetic Fields , Insulin-Like Growth Factor I/metabolism , Melatonin/blood , Progesterone/blood , Prolactin/blood , Animals , Cattle , Female , Pregnancy
7.
Bioelectromagnetics ; 24(8): 557-63, 2003 Dec.
Article in English | MEDLINE | ID: mdl-14603475

ABSTRACT

Milk production is the main agricultural income in the province of Québec, and the electrical distribution network traverses the rural dairy production region. This study evaluates the hypothesis that electric and magnetic fields may affect dairy production. Sixteen multiparous nonpregnant lactating Holstein cows (weighing 662 +/- 65 kg and with 150.4 +/- 40 days of lactation) were confined to wooden metabolic crates during the experiment with a 12:12 h light:dark cycle. The cows were divided into two replicates of eight cows each and exposed to a vertical EF of 10 kV/m and an uniform horizontal MF of 30 microT at 60 Hz. Replicate one was exposed for three periods. Each period was represented by an estrous cycle ranging from 24 to 27 days. During the first period, the electric and magnetic fields (E&MF) were off; during the second period they were on; and during the final period, they were off. The second replicate was exposed for three periods also, but the exposure protocol was reversed (first period, on; second period, off; last period, on). Exposure to E&MF (on) resulted in an average decrease of 4.97, 13.78, and 16.39% in milk yield, fat corrected milk yield, and milk fat, respectively; and an increase of 4.75% in dry matter intake.


Subject(s)
Dose-Response Relationship, Radiation , Eating/physiology , Eating/radiation effects , Electromagnetic Fields , Milk Ejection/physiology , Milk Ejection/radiation effects , Milk/metabolism , Models, Biological , Animals , Cattle , Electricity , Female , Pregnancy , Pregnancy, Animal/physiology , Pregnancy, Animal/radiation effects , Radiation Dosage , Whole-Body Irradiation
8.
Anim Reprod Sci ; 77(1-2): 11-20, 2003 May 15.
Article in English | MEDLINE | ID: mdl-12654524

ABSTRACT

To study the effects of exposure to extremely low frequency (ELF) electric and magnetic fields (EMF) on the estrous cycle of dairy cows under short-day photoperiod, 16 non-lactating, non-pregnant Holstein cows were exposed to a vertical electric field of 10 kV/m and a horizontal magnetic field of 30 microT for 16 h per day in a cross-over design consisting of two sequences. Each sequence included three periods, and each period corresponded to the duration of one estrous cycle. All animals were maintained under short photoperiod (8 h light/16 h dark) during the trial. Exposure to EMF had an impact on the duration of a complete estrous cycle (P<0.01) and on the duration of the luteal phase (P<0.01). The mean duration of one cycle was 19.5+/-0.4 for the control and 21.3+/-0.4 days for the exposed animals, respectively. The mean duration of the luteal phase was 15.4+/-0.4 days for the control and 17.2+/-0.4 days for the exposed group. The total area under the progesterone (P(4)) curve, the amplitude of the curve or the slope of the P(4) rise at the onset of the luteal phase were not affected by EMF exposure. Results indicate that exposure to EMF may increase the duration of the estrous cycle.


Subject(s)
Cattle/physiology , Electromagnetic Fields/adverse effects , Estrous Cycle , Photoperiod , Animals , Female , Luteal Phase , Progesterone/blood , Time Factors
9.
J Dairy Sci ; 85(11): 2843-9, 2002 Nov.
Article in English | MEDLINE | ID: mdl-12487451

ABSTRACT

Electric and magnetic fields (EMF) are generated by the transmission of electricity through high tension lines traversing rural areas. Previous studies showed increased dry matter intake (DMI) and fat corrected milk in dairy cows exposed to EMF. Because EMF exposure has been shown to suppress pineal release of melatonin in some species, it was hypothesized that EMF effects resemble those of exposure to long days. Previous studies have shown that DMI and milk production increase in dairy cattle in response to long day photoperiods, and this has been observed in association with increased circulating insulin-like growth factor 1 (IGF-1), but not growth hormone (GH). The hypothesis that EMF act by modifying the response to photoperiod was tested by subjecting dairy cows to controlled EMF exposure while keeping them under short-day conditions. Sixteen lactating, pregnant Holstein cows were exposed to a vertical electric field of 10 kV/m and a horizontal magnetic field of 30 microT in a crossover design with treatment switchback. Two groups of eight cows each were exposed to EMF for 16 h/d in either oftwo sequences. Each sequence consisted of three consecutive 28-d periods. All animals were maintained under short day conditions (8 h light, 16 h dark) during the trial. DMI and plasma IGF-1 were increased (P < 0.01) during EMF exposure (17.03 vs.16.04 kg/d, SE = 0.4; 137 +/- 6 ng/ml vs 126 +/- 6, respectively). The mean GH concentration was not affected, but a treatment x hour interaction was detected, with GH lower for the EMF exposed animals during the first 16 h of the sampling period, and higher for the last 8 h. Overall, the yield of milk or its components was not affected by EMF exposure, but milk yield was significantly higher for the exposed animals during wk 4 of treatment.


Subject(s)
Cattle/physiology , Eating , Electromagnetic Fields , Growth Hormone/blood , Insulin-Like Growth Factor I/analysis , Lactation/physiology , Animals , Environmental Exposure , Female , Melatonin/blood , Milk/metabolism , Photoperiod , Pregnancy , Prolactin/blood
10.
Nat Biotechnol ; 19(4): 342-7, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11283592

ABSTRACT

We describe a flexible system for gene expression profiling using arrays of tens of thousands of oligonucleotides synthesized in situ by an ink-jet printing method employing standard phosphoramidite chemistry. We have characterized the dependence of hybridization specificity and sensitivity on parameters including oligonucleotide length, hybridization stringency, sequence identity, sample abundance, and sample preparation method. We find that 60-mer oligonucleotides reliably detect transcript ratios at one copy per cell in complex biological samples, and that ink-jet arrays are compatible with several different sample amplification and labeling techniques. Furthermore, results using only a single carefully selected oligonucleotide per gene correlate closely with those obtained using complementary DNA (cDNA) arrays. Most of the genes for which measurements differ are members of gene families that can only be distinguished by oligonucleotides. Because different oligonucleotide sequences can be specified for each array, we anticipate that ink-jet oligonucleotide array technology will be useful in a wide variety of DNA microarray applications.


Subject(s)
Gene Expression , In Situ Hybridization/methods , Oligonucleotide Array Sequence Analysis/methods , Oligonucleotides/chemistry , Cells, Cultured , Chromatography, High Pressure Liquid , DNA, Complementary/metabolism , Humans , Image Processing, Computer-Assisted , Jurkat Cells , K562 Cells , Oligonucleotides/chemical synthesis , Open Reading Frames , Polymerase Chain Reaction , RNA, Complementary/metabolism , RNA, Messenger/metabolism , Reproducibility of Results , Reverse Transcriptase Polymerase Chain Reaction , Saccharomyces cerevisiae , Sensitivity and Specificity , Time Factors , Transcription, Genetic , Tretinoin/chemistry , Tumor Cells, Cultured
11.
Nature ; 409(6822): 922-7, 2001 Feb 15.
Article in English | MEDLINE | ID: mdl-11237012

ABSTRACT

The most important product of the sequencing of a genome is a complete, accurate catalogue of genes and their products, primarily messenger RNA transcripts and their cognate proteins. Such a catalogue cannot be constructed by computational annotation alone; it requires experimental validation on a genome scale. Using 'exon' and 'tiling' arrays fabricated by ink-jet oligonucleotide synthesis, we devised an experimental approach to validate and refine computational gene predictions and define full-length transcripts on the basis of co-regulated expression of their exons. These methods can provide more accurate gene numbers and allow the detection of mRNA splice variants and identification of the tissue- and disease-specific conditions under which genes are expressed. We apply our technique to chromosome 22q under 69 experimental condition pairs, and to the entire human genome under two experimental conditions. We discuss implications for more comprehensive, consistent and reliable genome annotation, more efficient, full-length complementary DNA cloning strategies and application to complex diseases.


Subject(s)
Chromosomes, Human, Pair 22 , Computational Biology , Genome, Human , Oligonucleotide Array Sequence Analysis , Algorithms , Alternative Splicing , Cell Line , DNA, Complementary , Exons , Human Genome Project , Humans , Oligonucleotide Probes
12.
Nat Genet ; 25(3): 333-7, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10888885

ABSTRACT

Expression profiling using DNA microarrays holds great promise for a variety of research applications, including the systematic characterization of genes discovered by sequencing projects. To demonstrate the general usefulness of this approach, we recently obtained expression profiles for nearly 300 Saccharomyces cerevisiae deletion mutants. Approximately 8% of the mutants profiled exhibited chromosome-wide expression biases, leading to spurious correlations among profiles. Competitive hybridization of genomic DNA from the mutant strains and their isogenic parental wild-type strains showed they were aneuploid for whole chromosomes or chromosomal segments. Expression profile data published by several other laboratories also suggest the use of aneuploid strains. In five separate cases, the extra chromosome harboured a close homologue of the deleted gene; in two cases, a clear growth advantage for cells acquiring the extra chromosome was demonstrated. Our results have implications for interpreting whole-genome expression data, particularly from cells known to suffer genomic instability, such as malignant or immortalized cells.


Subject(s)
Aneuploidy , Chromosomes, Fungal , Saccharomyces cerevisiae/genetics , DNA, Fungal/analysis , Gene Expression , Oligonucleotide Array Sequence Analysis/methods
13.
Bioelectromagnetics ; 20(6): 358-64, 1999 Sep.
Article in English | MEDLINE | ID: mdl-10453063

ABSTRACT

Eight multiparous, nonlactating pregnant Holstein cows (at 198 +/- 35 days of gestation and weighing 608 + 24 kg) and seven nonlactating nonpregnant ovariectomized heifers (weighing 370 + 29 kg) were confined to wooden metabolism crates in an electric and magnetic field chamber. Subarachnoidal catheters were inserted before the activation of the electric and magnetic fields. For 30 days, cows and heifers were continuously exposed in separate trials to electric and magnetic fields (60 Hz, 10 kV/m, and 30 microT). Blood plasma and cerebrospinal fluid samples were collected for 3 consecutive days before the exposure period, the last 3 days of the exposure period, and for 3 days starting 5 days after the exposure period. Concentrations of Ca, Mg, Cu, Zn, Fe, Mn, Na, P, and K in blood plasma and cerebrospinal fluid were determined. Exposure to electric and magnetic fields resulted in decreased concentrations of Mg in blood plasma and in increased concentrations of Ca and P and decreased concentrations of Fe and Mn in cerebrospinal fluid.


Subject(s)
Cattle/blood , Cattle/cerebrospinal fluid , Electromagnetic Fields/adverse effects , Trace Elements/blood , Trace Elements/cerebrospinal fluid , Animals , Calcium/blood , Calcium/cerebrospinal fluid , Female , Iron/blood , Iron/cerebrospinal fluid , Magnesium/blood , Magnesium/cerebrospinal fluid , Manganese/blood , Manganese/cerebrospinal fluid , Phosphorus/blood , Phosphorus/cerebrospinal fluid , Pregnancy
14.
Neurochem Res ; 23(12): 1527-31, 1998 Dec.
Article in English | MEDLINE | ID: mdl-9821157

ABSTRACT

Eight multiparous non-lactating pregnant Holstein cows at 198 +/- 35 d of gestation, weighing 608 +/- 24 kg, were confined to wooden metabolic cages in an electric and magnetic field chamber with a 12:12 h light:dark cycle. Subarachnoidal catheters were installed 5 d before the activation of the electric and magnetic fields. The cows were exposed to electric and magnetic fields (60 Hz, 10 kV/m and 30 microT) continuously except for the feeding and cleaning time for an average of 21.44 +/- 1.4 h per day for a period of 30 d. Cerebrospinal fluid samples were collected on three consecutive days before an exposure period of 30 d, on the last 3 d of the exposure period, and for 3 d starting 5 d after the exposure period. The concentrations of beta-endorphin, tryptophan, 5-hydroxyindoleacetic acid, homovanillic acid, 3-methoxy-4-hydroxyphenylethyleneglycol and quinolinic acid in cerebrospinal fluid were determined. There was a significant increase in quinolinic acid, and a trend towards an increase in tryptophan, findings consistent with a weakening of the blood-brain barrier due to exposure to the electric and magnetic fields.


Subject(s)
Biogenic Amines/cerebrospinal fluid , Cattle/cerebrospinal fluid , Electromagnetic Fields , Quinolinic Acid/cerebrospinal fluid , beta-Endorphin/cerebrospinal fluid , Animals , Dairying , Female , Homovanillic Acid/cerebrospinal fluid , Hydroxyindoleacetic Acid/cerebrospinal fluid , Methoxyhydroxyphenylglycol/cerebrospinal fluid , Tryptophan/cerebrospinal fluid
15.
Nat Med ; 4(11): 1293-301, 1998 Nov.
Article in English | MEDLINE | ID: mdl-9809554

ABSTRACT

We describe here a method for drug target validation and identification of secondary drug target effects based on genome-wide gene expression patterns. The method is demonstrated by several experiments, including treatment of yeast mutant strains defective in calcineurin, immunophilins or other genes with the immunosuppressants cyclosporin A or FK506. Presence or absence of the characteristic drug 'signature' pattern of altered gene expression in drug-treated cells with a mutation in the gene encoding a putative target established whether that target was required to generate the drug signature. Drug dependent effects were seen in 'targetless' cells, showing that FK506 affects additional pathways independent of calcineurin and the immunophilins. The described method permits the direct confirmation of drug targets and recognition of drug-dependent changes in gene expression that are modulated through pathways distinct from the drug's intended target. Such a method may prove useful in improving the efficiency of drug development programs.


Subject(s)
Calcineurin/genetics , Cyclosporine/pharmacology , Gene Expression Regulation, Fungal , Immunophilins/genetics , Immunosuppressive Agents/pharmacology , Saccharomyces cerevisiae/genetics , Tacrolimus/pharmacology , Drug Design , Gene Expression Regulation, Fungal/drug effects , Genotype , Models, Biological , Mutation , Polymerase Chain Reaction , Reproducibility of Results , Saccharomyces cerevisiae/drug effects , Signal Transduction
16.
Bioelectromagnetics ; 19(7): 438-43, 1998.
Article in English | MEDLINE | ID: mdl-9771588

ABSTRACT

Sixteen multiparous nonpregnant lactating Holstein cows (each weighing 662 +/- 65 kg in 150.4 +/- 40 day of lactation) were confined to wooden metabolic cages with 12:12 h light:dark cycle during the experiment. The cows were divided into two sequences of eight cows each and exposed to electric and magnetic fields (EMF) in an exposure chamber. This chamber produced a vertical electric field of 10 kV/m and a uniform horizontal magnetic field of 30 microT at 60 Hz. One sequence was exposed for three estrous cycles of 24 to 27 days. During the first estrous cycle, the electric and magnetic fields were off; during the second estrous cycle, they were on; and during the third estrous cycle, they were off. The second sequence was also exposed for three 24 to 26 days estrous cycles, but the exposure to the fields was reversed (first estrous cycle, on; second estrous cycle, off; third estrous cycle, on). The length of each exposure period (21 to 27 days) varied according to the estrous cycle length. No differences were detected in plasma progesterone concentrations and area under the progesterone curve during estrous cycles between EMF nonexposed and exposed periods (2.28 +/- 0.17 and 2.25 +/- 0.17; and 24.5 +/- 1.9 vs. 26.4 +/- 1.9 ng/ml, respectively). However, estrous cycle length, determined by the presence of a functional corpus luteum detected by concentrations of progesterone equal to or more than 1 ng/ml plasma, was shorter in nonexposed cows than when they were exposed to EMF (22.0 +/- 0.9 vs. 25.3 +/- 1.4 days).


Subject(s)
Electricity , Estrus/blood , Magnetics , Progesterone/blood , Animals , Cattle , Female , Time Factors
17.
J Dairy Sci ; 81(3): 722-7, 1998 Mar.
Article in English | MEDLINE | ID: mdl-9565875

ABSTRACT

Sixteen multiparous, pregnant, lactating Holstein cows (weighing 600 +/- 50 kg, at 184.8 +/- 52 d of lactation, and at 101.9 +/- 43 d of gestation) were confined to wooden metabolism cages and exposed to a vertical electric field of 10 kV/m and a uniform horizontal magnetic field of 30 microT. The trial was conducted using a switchback statistical design. Cows were divided into two sequence groups of 8 cows each. One sequence group was exposed for three periods of 28 d each. The electric and magnetic fields were off during the first period, on during the second period, and off during the final period. The second sequence group was exposed for three periods also, but the activity of the fields was reversed (on during the first period, off during the second period, and on during the third period). On d 25 of each exposure period, blood samples were obtained every 0.5 h for 14 h starting at 1700 h to determine melatonin concentration. Nocturnal melatonin concentrations did not show any variation that could be attributed to exposure to electric and magnetic fields.


Subject(s)
Cattle/blood , Circadian Rhythm , Electromagnetic Fields/adverse effects , Melatonin/blood , Animals , Female , Lactation , Pregnancy
18.
J Dairy Sci ; 79(9): 1549-54, 1996 Sep.
Article in English | MEDLINE | ID: mdl-8899520

ABSTRACT

Sixteen multiparous Holstein cows (weighing 600 +/- 50 kg, in 184.8 +/- 52 d of lactation, and at 101.9 +/- 43 d of gestation) were confined to wooden metabolic cages and exposed to a vertical electric field of 10 kV/ m and to a uniform horizontal magnetic field of 30 microT (microtesla). The trial was conducted as a switch-back statistical design. Cows were divided into two replicates of 8 cows each. One replicate was exposed for three periods of 28 d each. During the first period, the electric and magnetic fields were off; during the second period, they were on; and, during the final period, they were off. The second replicate was exposed for three periods also, but the activity of the fields was reversed (first period, on; second period, off; and third period, on). Blood samples were obtained twice weekly for the determination of cortisol and progesterone and once weekly for the determination of pH and blood gases. Milk samples were collected once weekly to determine milk components (fat, protein, SNF, and SCC). Milk yield and feed consumption were measured daily. Most of the variables studied (bicarbonate, pH, O2 and CO2 partial pressures, cortisol concentration in blood, uncorrected milk yield, and milk components other than milk fat) showed no variation that could be attributed to exposure to electric and magnetic fields. Associations were found between the electric and magnetic fields and increased DMI, 4% FCM yield, milk fat content, and plasma progesterone.


Subject(s)
Cattle/physiology , Electromagnetic Fields/adverse effects , Lactation , Animals , Carbon Dioxide/blood , Eating , Female , Hydrocortisone/blood , Hydrogen-Ion Concentration , Milk/chemistry , Oxygen/blood , Partial Pressure , Progesterone/blood
19.
J Reprod Fertil ; 95(1): 167-73, 1992 May.
Article in English | MEDLINE | ID: mdl-1625232

ABSTRACT

Fifteen sows were assigned to three groups of five each, according to gestational age (109 days, 114 days or labour). Two fetuses per sow were chosen at random, and amnion, allantochorion, amniochorion, amniotic fluid and fetal urine were collected. Tissues were enzymatically dispersed and incubated for 1, 2, 3 or 4 h and the prostaglandin (PG) content of the supernatant medium was measured by radioimmunoassay. In general, all placental cell types produced at least three times more prostaglandin E (PGE) and 6-keto-PGF1 alpha than PGF. Production did not vary across gestational age, except that production of 6-keto-PGF1 alpha was lower in cells collected during labour, resulting in a relative increase in PGF and PGE. Aminochorion cells had a lower de novo capacity to synthesize PG than did allantochorion or amniochorion, whereas treatment of allantochorion with preterm amniotic fluid, preterm or term fetal urine resulted in increased PG output. These results demonstrate that porcine placental cells can synthesize and metabolize prostaglandin in late gestation but suggest that their capacity to produce PGI2 (as measured by 6-keto-PGF1 alpha) is lower than for other prostaglandins during labour.


Subject(s)
Placenta/metabolism , Prostaglandins/biosynthesis , Swine/metabolism , 6-Ketoprostaglandin F1 alpha/biosynthesis , Allantoin/metabolism , Amnion/metabolism , Animals , Cells, Cultured , Chorion/metabolism , Dinoprost/analogs & derivatives , Dinoprost/biosynthesis , Female , Gestational Age , Placenta/cytology , Pregnancy , Prostaglandins E/biosynthesis , Prostaglandins F/biosynthesis
20.
J Ment Health Adm ; 17(1): 48-60, 1990.
Article in English | MEDLINE | ID: mdl-10104412

ABSTRACT

Individualized care is a total system of care that is tailored to a child with severely maladjusted behavior. The services are unconditional, flexible, child and family focused, and interagency coordinated. The services follow the child until the child is adjusting in a normalized, mainstream environment. Individualized care is illustrated through two different projects. One is the Alaska Youth Initiative where individualized care was used to return children from out-of-state, residential programs. The other is Project Wraparound where it was used to prevent children from being removed from their families. This paper begins with the principles of individualized care and then describes the ecological, multilevel assessment process that coincides with the delivery of services. A case example from Project Wraparound is provided for clarification. Following the case example is a discussion of the need for evaluation data with some suggested strategies for documenting effectiveness. The final section focuses on two barriers to the implementation of individualized care. One is the tendency to think in terms of component programs rather than individualized services. The other barrier is the competition for scarce resources. Strategies are presented for overcoming both barriers.


Subject(s)
Child Behavior Disorders/therapy , Child Health Services/organization & administration , Mental Health Services/organization & administration , Patient Care Planning , Adolescent , Alaska , Child , Continuity of Patient Care , Family Health , Humans , Models, Theoretical , Pilot Projects , Vermont
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