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1.
Lupus Sci Med ; 7(1)2020 04.
Article in English | MEDLINE | ID: mdl-32343673

ABSTRACT

OBJECTIVES: Recent investigations in humans and mouse models with lupus have revealed evidence of mitochondrial dysfunction and production of mitochondrial reactive oxygen species (mROS) in T cells and neutrophils. This can provoke numerous cellular changes including oxidation of nucleic acids, proteins, lipids and even induction of cell death. We have previously observed that in T cells from patients with lupus, the increased mROS is capable of provoking oligomerisation of mitochondrial antiviral stimulator (MAVS) and production of type I interferon (IFN-I). mROS in SLE neutrophils also promotes the formation of neutrophil extracellular traps (NETs), which are increased in lupus and implicated in renal damage. As a result, in addition to traditional immunosuppression, more comprehensive treatments for lupus may also include non-immune therapy, such as antioxidants. METHODS: Lupus-prone MRL-lpr mice were treated from weaning for 11 weeks with the mitochondria-targeted antioxidant, MitoQ (200 µM) in drinking water. Mice were then assessed for ROS production in neutrophils, NET formation, MAVS oligomerisation, serum IFN-I, autoantibody production and renal function. RESULTS: MitoQ-treated mice manifested reduced neutrophil ROS and NET formation, decreased MAVS oligomerisation and serum IFN-I, and reduced immune complex formation in kidneys, despite no change in serum autoantibody . CONCLUSIONS: These findings reveal the potential utility of targeting mROS in addition to traditional immunosuppressive therapy for lupus.


Subject(s)
Extracellular Traps/immunology , Kidney Diseases/metabolism , Lupus Erythematosus, Systemic/immunology , Mitochondria/metabolism , Organophosphorus Compounds/pharmacology , Ubiquinone/analogs & derivatives , Animals , Autoantibodies/metabolism , Disease Models, Animal , Female , Humans , Interferon Type I/immunology , Kidney/metabolism , Kidney/physiopathology , Kidney Diseases/physiopathology , Lupus Erythematosus, Systemic/physiopathology , Male , Mice , Mice, Inbred MRL lpr , Neutrophils/immunology , Oxidation-Reduction/drug effects , Oxidative Stress/immunology , Reactive Oxygen Species/metabolism , T-Lymphocytes/immunology , Ubiquinone/pharmacology
2.
Front Immunol ; 8: 1585, 2017.
Article in English | MEDLINE | ID: mdl-29201031

ABSTRACT

Sexual bias is a hallmark in various diseases. This review evaluates sexual dimorphism in clinical and experimental coxsackievirus B3 (CVB3) myocarditis, and how sex bias in the experimental disease changes with increased age. Coxsackieviruses are major causes of viral myocarditis, an inflammation of the heart muscle, which is more frequent and severe in men than women. Young male mice infected with CVB3 develop heart-specific autoimmunity and severe myocarditis. Females infected during estrus (high estradiol) develop T-regulatory cells and when infected during diestrus (low estradiol) develop autoimmunity similar to males. During estrus, protection depends on estrogen receptor alpha (ERα), which promotes type I interferon, activation of natural killer/natural killer T cells and suppressor cell responses. Estrogen receptor beta has opposing effects to ERα and supports pro-inflammatory immunity. However, the sexual dimorphism of the disease is significantly ameliorated in aged animals when old females become as susceptible as males. This correlates to a selective loss of the ERα that is required for immunosuppression. Therefore, sex-associated hormones control susceptibility in the virus-mediated disease, but their impact can alter with the age and physiological stage of the individual.

3.
Sci Signal ; 9(456): ra115, 2016 11 29.
Article in English | MEDLINE | ID: mdl-27899525

ABSTRACT

The increased expression of genes induced by type I interferon (IFN) is characteristic of viral infections and systemic lupus erythematosus (SLE). We showed that mitochondrial antiviral signaling (MAVS) protein, which normally forms a complex with retinoic acid gene I (RIG-I)-like helicases during viral infection, was activated by oxidative stress independently of RIG-I helicases. We found that chemically generated oxidative stress stimulated the formation of MAVS oligomers, which led to mitochondrial hyperpolarization and decreased adenosine triphosphate production and spare respiratory capacity, responses that were not observed in similarly treated cells lacking MAVS. Peripheral blood lymphocytes of SLE patients also showed spontaneous MAVS oligomerization that correlated with the increased secretion of type I IFN and mitochondrial oxidative stress. Furthermore, inhibition of mitochondrial reactive oxygen species (ROS) by the mitochondria-targeted antioxidant MitoQ prevented MAVS oligomerization and type I IFN production. ROS-dependent MAVS oligomerization and type I IFN production were reduced in cells expressing the MAVS-C79F variant, which occurs in 30% of sub-Saharan Africans and is linked with reduced type I IFN secretion and milder disease in SLE patients. Patients expressing the MAVS-C79F variant also had reduced amounts of oligomerized MAVS in their plasma compared to healthy controls. Together, our findings suggest that oxidative stress-induced MAVS oligomerization in SLE patients may contribute to the type I IFN signature that is characteristic of this syndrome.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , Lupus Erythematosus, Systemic/metabolism , Lymphocytes/metabolism , Mitochondria/metabolism , Protein Multimerization , Reactive Oxygen Species/metabolism , Adaptor Proteins, Signal Transducing/genetics , Amino Acid Substitution , Animals , Humans , Lupus Erythematosus, Systemic/genetics , Mice , Mitochondria/genetics , Mutation, Missense
4.
Curr Opin Virol ; 16: 8-14, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26554915

ABSTRACT

Enteroviruses are small, non-enveloped, positive-sense single-strand RNA viruses, and are ubiquitously found throughout the world. These viruses usually cause asymptomatic or mild febrile illnesses, but have a propensity to induce severe diseases including type 1 diabetes and pancreatitis, paralysis and neuroinflammatory disease, myocarditis, or hepatitis. This pathogenicity may result from induction of autoimmunity to organ-specific antigens. While enterovirus-triggered autoimmunity can arise from multiple mechanisms including antigenic mimicry and release of sequestered antigens, the recent demonstration of T cells expressing dual T cell receptors arising as a natural consequence of Theiler's virus infection is the first demonstration of this autoimmune mechanism.


Subject(s)
Autoimmunity , Picornaviridae Infections/immunology , Picornaviridae Infections/virology , Picornaviridae/physiology , Animals , Autoantigens/immunology , Cross Reactions/immunology , Epitopes/immunology , Host-Pathogen Interactions/immunology , Humans , Molecular Mimicry/immunology , Picornaviridae Infections/genetics , Picornaviridae Infections/metabolism , T-Lymphocytes/immunology , T-Lymphocytes/metabolism
5.
PLoS One ; 9(5): e96156, 2014.
Article in English | MEDLINE | ID: mdl-24816846

ABSTRACT

Cellular FLIP (c-FLIP) is an enzymatically inactive paralogue of caspase-8 and as such can block death receptor-induced apoptosis. However, independent of death receptors, c-FLIP-Long (c-FLIPL) can heterodimerize with and activate caspase-8. This is critical for promoting the growth and survival of T lymphocytes as well as the regulation of the RIG-I helicase pathway for type I interferon production in response to viral infections. Truncated forms of FLIP also exist in mammalian cells (c-FLIPS) and certain viruses (v-FLIP), which lack the C-terminal domain that activates caspase-8. Thus, the ratio of c-FLIPL to these short forms of FLIP may greatly influence the outcome of an immune response. We examined this model in mice transgenically expressing c-FLIPS in T cells during infection with Coxsackievirus B3 (CVB3). In contrast to our earlier findings of reduced myocarditis and mortality with CVB3 infection of c-FLIPL-transgenic mice, c-FLIPS-transgenic mice were highly sensitive to CVB3 infection as manifested by increased cardiac virus titers, myocarditis score, and mortality compared to wild-type C57BL/6 mice. This observation was paralleled by a reduction in serum levels of IL-10 and IFN-α in CVB3-infected c-FLIPS mice. In vitro infection of c-FLIPS T cells with CVB3 confirmed these results. Furthermore, molecular studies revealed that following infection of cells with CVB3, c-FLIPL associates with mitochondrial antiviral signaling protein (MAVS), increases caspase-8 activity and type I IFN production, and reduces viral replication, whereas c-FLIPS promotes the opposite phenotype.


Subject(s)
CASP8 and FADD-Like Apoptosis Regulating Protein/metabolism , Coxsackievirus Infections/metabolism , Interferon Type I/metabolism , Viremia/metabolism , Adaptor Proteins, Signal Transducing/metabolism , Animals , Blotting, Western , CASP8 and FADD-Like Apoptosis Regulating Protein/genetics , Caspase 8/metabolism , Cells, Cultured , Coxsackievirus Infections/genetics , Coxsackievirus Infections/virology , Embryo, Mammalian/cytology , Enterovirus/genetics , Enterovirus/physiology , Female , Fibroblasts/metabolism , Fibroblasts/virology , Host-Pathogen Interactions , Humans , Interferon Type I/blood , Interferon Type I/genetics , Interferon-alpha/blood , Interferon-alpha/genetics , Interferon-alpha/metabolism , Interferon-beta/blood , Interferon-beta/genetics , Interferon-beta/metabolism , Interleukin-10/blood , Male , Mice, Inbred C57BL , Mice, Transgenic , Myocarditis/genetics , Myocarditis/metabolism , Myocarditis/virology , Reverse Transcriptase Polymerase Chain Reaction , T-Lymphocytes/metabolism , T-Lymphocytes/virology , Viremia/genetics , Viremia/virology
6.
J Biol Chem ; 289(2): 1183-91, 2014 Jan 10.
Article in English | MEDLINE | ID: mdl-24275659

ABSTRACT

Caspase-8 is now appreciated to govern both apoptosis following death receptor ligation and cell survival and growth via inhibition of the Ripoptosome. Cells must therefore carefully regulate the high level of caspase-8 activity during apoptosis versus the modest levels observed during cell growth. The caspase-8 paralogue c-FLIP is a good candidate for a molecular rheostat of caspase-8 activity. c-FLIP can inhibit death receptor-mediated apoptosis by competing with caspase-8 for recruitment to FADD. However, full-length c-FLIPL can also heterodimerize with caspase-8 independent of death receptor ligation and activate caspase-8 via an activation loop in the C terminus of c-FLIPL. This triggers cleavage of c-FLIPL at Asp-376 by caspase-8 to produce p43FLIP. The continued function of p43FLIP has, however, not been determined. We demonstrate that acute deletion of endogenous c-FLIP in murine effector T cells results in loss of caspase-8 activity and cell death. The lethality and caspase-8 activity can both be rescued by the transgenic expression of p43FLIP. Furthermore, p43FLIP associates with Raf1, TRAF2, and RIPK1, which augments ERK and NF-κB activation, IL-2 production, and T cell proliferation. Thus, not only is c-FLIP the initiator of caspase-8 activity during T cell activation, it is also an initial caspase-8 substrate, with cleaved p43FLIP serving to both stabilize caspase-8 activity and promote activation of pathways involved with T cell growth.


Subject(s)
CASP8 and FADD-Like Apoptosis Regulating Protein/metabolism , Caspase 8/metabolism , Extracellular Signal-Regulated MAP Kinases/metabolism , NF-kappa B/metabolism , Peptide Fragments/metabolism , T-Lymphocytes/metabolism , Animals , CASP8 and FADD-Like Apoptosis Regulating Protein/chemistry , CASP8 and FADD-Like Apoptosis Regulating Protein/genetics , Caspase 8/genetics , Cell Proliferation , Cell Survival , Cells, Cultured , Humans , Immunoblotting , Interleukin-2/metabolism , Jurkat Cells , Mice , Mice, Inbred C57BL , Mice, Knockout , Mice, Transgenic , Peptide Fragments/genetics , Proto-Oncogene Proteins c-raf , Receptor-Interacting Protein Serine-Threonine Kinases/metabolism , T-Lymphocytes/cytology , TNF Receptor-Associated Factor 2/metabolism
7.
J Cardiovasc Transl Res ; 7(2): 182-91, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24323874

ABSTRACT

Under normal conditions, autophagy maintains cardiomyocyte health and integrity through turnover of organelles. During stress, oxygen and nutrient deprivation, or microbial infection, autophagy prolongs cardiomyocyte survival. Sex differences in induction of cell death may to some extent explain the disparity between the sexes in many human diseases. However, sex differences in gene expression, which regulate cell death and autophagy, were so far not taken in consideration to explain the sex bias of viral myocarditis. Coxsackievirus B3 (CVB3)-induced myocarditis is a sex-biased disease, with females being substantially less susceptible than males and sex hormones largely determine this bias. CVB3 was shown to induce and subvert the autophagosome for its optimal viral RNA replication. Gene expression analysis on mouse and human, healthy and CVB3-infected, cardiac samples of both sexes, suggests sex differences in autophagy-related gene expression. This review discusses the aspects of sex bias in autophagy induction in cardiomyocytes.


Subject(s)
Autophagy , Coxsackievirus Infections/pathology , Coxsackievirus Infections/virology , Enterovirus B, Human/pathogenicity , Myocarditis/pathology , Myocarditis/virology , Myocytes, Cardiac/pathology , Myocytes, Cardiac/virology , Animals , Autophagy/genetics , Coxsackievirus Infections/genetics , Coxsackievirus Infections/immunology , Enterovirus B, Human/immunology , Female , Gene Expression Regulation , Host-Pathogen Interactions , Humans , Male , Myocarditis/genetics , Myocarditis/immunology , Myocytes, Cardiac/immunology , Risk Assessment , Risk Factors , Sex Factors
8.
Curr Opin Rheumatol ; 25(4): 502-8, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23656709

ABSTRACT

PURPOSE OF REVIEW: To review how autoimmunity is induced in viral myocarditis. RECENT FINDINGS: Clinical and experimental myocarditis follows microbial infections, but autoimmunity to cardiac antigens leads to heart failure since infected myocytes are sparse and virus clearance is rapid. In mice, CD4+ T cells specific for cardiac alpha myosin heavy chain (αMYHC) cause myocarditis and mice tolerized to αMYHC are protected from virus challenge proving pathogenesis depends upon autoimmunity. Most importantly, multiple microbes share the same mimicking epitope with αMYHC. Serial infections with very different microbes could result in memory responses to the shared epitope leading to aggressive and severe heart failure. A similar phenomenon may explain autoimmune diseases with suspected infectious causes, where specific pathogens have not been identified. Production of the relevant cardiac epitope for antigen presentation requires more than myosin release from dead myocytes. Otherwise, myocarditis would commonly follow myocardial infarcts. The inherent nature of the innate immune response associated with viral infections in the heart is crucial to cardiac epitope expression. SUMMARY: Antigenic mimicry between microbes and cardiac proteins causes autoimmunity in myocarditis. Characteristics of innate immunity associated with cardiac infection determine relevant epitope expression (cryptic epitopes).


Subject(s)
Autoimmune Diseases/virology , Myocarditis/virology , Virus Diseases/complications , Animals , Autoantigens/immunology , Autoimmune Diseases/immunology , Autoimmunity/immunology , Autophagy/immunology , Humans , Immunity, Innate , Mice , Molecular Mimicry/immunology , Myocarditis/immunology , Virus Diseases/immunology
10.
RNA ; 18(3): 434-48, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22274955

ABSTRACT

The catalytic activity of the hammerhead ribozyme is limited by its ability to fold into the native tertiary structure. Analysis of folding has been hampered by a lack of assays that can independently monitor the environment of nucleobases throughout the ribozyme-substrate complex in real time. Here, we report the development and application of a new folding assay in which we use pyrrolo-cytosine (pyC) fluorescence to (1) probe active-site formation, (2) examine the ability of peripheral ribozyme domains to support native folding, (3) identify a pH-dependent conformational change within the ribozyme, and (4) explore its influence on the equilibrium between the folded and unfolded core of the hammerhead ribozyme. We conclude that the natural ribozyme folds in two distinct noncooperative steps and the pH-dependent correlation between core folding and activity is linked to formation of the G8-C3 base pair.


Subject(s)
Cytosine/analogs & derivatives , Fluorescent Dyes/chemistry , Pyrroles/chemistry , RNA Folding , RNA, Catalytic/chemistry , Base Pairing , Base Sequence , Catalytic Domain/genetics , Cytosine/chemistry , Hydrogen-Ion Concentration , Kinetics , Mutation , RNA, Catalytic/genetics
11.
Future Virol ; 7(12): 1221-1236, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23503762

ABSTRACT

Picornaviruses are small, nonenveloped, positive-stranded RNA viruses, which cause a wide range of animal and human diseases, based on their distinct tissue and cell type tropisms. Myocarditis, poliomyelitis, hepatitis and the common cold are the most significant human illnesses caused by picornaviruses. The host response to picornaviruses is complex, and the damage to tissues occurs not only from direct viral replication within infected cells. Picornaviruses exhibit an exceptional ability to evade the early innate immune response, resulting in chronic infection and autoimmunity. This review discusses the detailed aspects of the early innate host response to picornaviruses infection mediated by RIG-I-like helicases, their adaptor, mitochondrial ant iviral signaling protein, innate immune-induced apoptosis, and the role of caspase-8 and its regulatory paralog, FLIP, in these processes.

12.
Immunology ; 135(4): 276-86, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22117649

ABSTRACT

Caspase-8 serves two paradoxical roles in T lymphocytes: it initiates apoptosis following death receptor engagement, and is also indispensible for proliferation following T-cell antigen receptor (TCR) signalling. These opposing processes appear to be controlled by both spatial and quantitative differences in caspase-8 activation. Given differences in the turnover of T-cell subsets, we compared caspase activity and susceptibility to cell death following TCR restimulation in murine CD4(+) and CD8(+) αß T cells and γδ T cells. We observed a spectrum of caspase activity in non-dying effector T cells in which CD4(+) T cells manifested the lowest levels of active caspases whereas γδ T cells manifested the highest levels. Further analysis revealed that most of the difference in T-cell subsets was the result of high levels of active caspase-3 in non-dying effector γδ T cells. Despite this, γδ T cells manifested little spontaneous or CD3 restimulation-induced cell death as the result of confinement of active caspases to the cell membrane. By contrast, CD4(+) T cells were highly sensitive to CD3-induced cell death, associated with the appearance of active caspases in the cytoplasm and cleavage of the caspase substrates Bid and ICAD. Hence, the location and amount of active caspases distinguishes effector T-cell subsets and profoundly influences the fate of the T-cell response.


Subject(s)
CD4-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/immunology , Caspase 3/metabolism , Lymphocyte Activation/immunology , Receptors, Antigen, T-Cell, gamma-delta/metabolism , Animals , Apoptosis , CD4-Positive T-Lymphocytes/cytology , CD4-Positive T-Lymphocytes/metabolism , CD8-Positive T-Lymphocytes/cytology , CD8-Positive T-Lymphocytes/metabolism , Caspase 3/genetics , Caspase 8/metabolism , Cells, Cultured , Mice , Mice, Inbred C57BL , Receptors, Antigen, T-Cell, alpha-beta/metabolism , Signal Transduction
13.
RNA ; 15(1): 44-54, 2009 Jan.
Article in English | MEDLINE | ID: mdl-19029307

ABSTRACT

The bacterial signal recognition particle (SRP) binds to ribosomes synthesizing inner membrane proteins and, by interaction with the SRP receptor, FtsY, targets them to the translocon at the membrane. Here we probe the conformation of SRP and SRP protein, Ffh, at different stages of targeting by measuring fluorescence resonance energy transfer (FRET) between fluorophores placed at various positions within SRP. Distances derived from FRET indicate that SRP binding to nontranslating ribosomes triggers a global conformational change of SRP that facilitates binding of the SRP receptor, FtsY. Binding of SRP to a signal-anchor sequence exposed on a ribosome-nascent chain complex (RNC) causes a further change of the SRP conformation, involving the flexible part of the Ffh(M) domain, which increases the affinity for FtsY of ribosome-bound SRP up to the affinity exhibited by the isolated NG domain of Ffh. This indicates that in the RNC-SRP complex the Ffh(NG) domain is fully exposed for binding FtsY to form the targeting complex. Binding of FtsY to the RNC-SRP complex results in a limited conformational change of SRP, which may initiate subsequent targeting steps.


Subject(s)
Ribosomes/metabolism , Signal Recognition Particle/chemistry , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Base Sequence , Binding Sites , Escherichia coli/metabolism , Escherichia coli Proteins/chemistry , Escherichia coli Proteins/metabolism , Fluorescence Resonance Energy Transfer , Models, Molecular , Molecular Sequence Data , Nucleic Acid Conformation , Protein Conformation , RNA, Bacterial/chemistry , RNA, Bacterial/metabolism , Ribosomes/chemistry , Signal Recognition Particle/metabolism
14.
J Mol Biol ; 351(2): 417-30, 2005 Aug 12.
Article in English | MEDLINE | ID: mdl-16005894

ABSTRACT

The signal recognition particle (SRP) initiates the co-translational targeting of proteins to the plasma membrane in bacteria by binding to the N-terminal signal sequence emerging from the translating ribosome. SRP in Escherichia coli is composed of one protein, Ffh, and 4.5S RNA. In the present work, we probe the structure of Ffh alone and in the complex with 4.5S RNA by measuring distances between different positions within Ffh and between Ffh and 4.5S RNA by fluorescence resonance energy transfer (FRET). According to the FRET distances, NG and M domains in free Ffh are in close contact, as in the A/A arrangement in the crystal structure of Ffh from Thermus aquaticus, in agreement with the formation of a crosslink between cysteine residues at two critical positions in the G and M domains. Upon Ffh binding to 4.5S RNA or a 61 nucleotide fragment comprising internal loops A-C, the G and M domains move apart to assume a more open conformation, as indicated by changes of FRET distances. The movement is smaller when Ffh binds to a 49 nucleotide fragment of 4.5S RNA comprising only internal loops A and B, i.e. lacking the binding site of the NG domain. The FRET results suggest that in the SRP complex 4.5S RNA is present in a bent, rather than extended, conformation. The domain rearrangement of Ffh that takes place upon formation of the SRP is probably important for subsequent steps of membrane targeting, including interactions with the translating ribosome and the SRP receptor.


Subject(s)
Escherichia coli Proteins/chemistry , Escherichia coli/metabolism , Fluorescence Resonance Energy Transfer/methods , Signal Recognition Particle/chemistry , Anisotropy , Base Sequence , Bridged Bicyclo Compounds/chemistry , Cell Membrane/metabolism , Microscopy, Fluorescence , Models, Molecular , Molecular Sequence Data , Mutation , Plasmids/metabolism , Protein Conformation , Protein Structure, Tertiary , Protein Transport , RNA/chemistry , Thermus/metabolism , Time Factors
15.
RNA ; 11(6): 947-57, 2005 Jun.
Article in English | MEDLINE | ID: mdl-15923378

ABSTRACT

The signal recognition particle (SRP) mediates membrane targeting of translating ribosomes displaying a signal-anchor sequence. In Escherichia coli, SRP consists of 4.5S RNA and a protein, Ffh, that recognizes the signal peptide emerging from the ribosome and the SRP receptor at the membrane, FtsY. In the present work, we studied the interactions between the NG and M domains in Ffh and their rearrangements upon complex formation with 4.5S RNA and/or FtsY. In free Ffh, the NG and M domains are facing one another in an orientation that allows cross-linking between positions 231 in the G domain and 377 in the M domain. There are binding interactions between the two domains, as the isolated domains form a strong complex. The interdomain contacts are disrupted upon binding of Ffh to 4.5S RNA, consuming a part of the total binding energy of 4.5S RNA-Ffh association that is roughly equivalent to the free energy of domain binding to each other. In the SRP particle, the NG domain binds to 4.5S RNA in a region adjacent to the binding site of the M domain. Ffh binding to FtsY also requires a reorientation of NG and M domains. These results suggest that in free Ffh, the binding sites for 4.5S RNA and FtsY are occluded by strong domain-domain interactions which must be disrupted for the formation of SRP or the Ffh-FtsY complex.


Subject(s)
Bacterial Proteins/chemistry , Escherichia coli Proteins/chemistry , RNA, Ribosomal/chemistry , Receptors, Cytoplasmic and Nuclear/chemistry , Signal Recognition Particle/chemistry , Bacterial Proteins/metabolism , Base Sequence , Binding Sites , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Fluorescence Resonance Energy Transfer , Molecular Sequence Data , Protein Structure, Tertiary , RNA, Bacterial , RNA, Ribosomal/metabolism , Receptors, Cytoplasmic and Nuclear/metabolism , Signal Recognition Particle/genetics , Signal Recognition Particle/metabolism
16.
Proc Natl Acad Sci U S A ; 101(21): 7902-6, 2004 May 25.
Article in English | MEDLINE | ID: mdl-15148364

ABSTRACT

Trigger factor (TF) and signal recognition particle (SRP) bind to the bacterial ribosome and are both crosslinked to protein L23 at the peptide exit, where they interact with emerging nascent peptide chains. It is unclear whether TF and SRP exclude one another from their ribosomal binding site(s). Here we show that SRP and TF can bind simultaneously to ribosomes or ribosome nascent-chain complexes exposing a SRP-specific signal sequence. Based on changes of the crosslinking pattern and on results obtained by fluorescence measurements using fluorescence-labeled SRP, TF binding induces structural changes in the ribosome-SRP complex. Furthermore, we show that binding of the SRP receptor, FtsY, to ribosome-bound SRP excludes TF from the ribosome. These results suggest that TF and SRP sample nascent chains on the ribosome in a nonexclusive fashion. The decision for ribosome nascent-chain complexes exposing a signal sequence to enter SRP-dependent membrane targeting seems to be determined by the binding of SRP, which is stabilized by signal sequence recognition, and promoted by the exclusion of TF due to the binding of the SRP receptor to ribosome-bound SRP.


Subject(s)
Escherichia coli Proteins/antagonists & inhibitors , Escherichia coli Proteins/metabolism , Peptidylprolyl Isomerase/antagonists & inhibitors , Peptidylprolyl Isomerase/metabolism , Receptors, Cytoplasmic and Nuclear/metabolism , Receptors, Peptide/metabolism , Ribosomes/metabolism , Signal Recognition Particle/metabolism , Bacterial Proteins/metabolism , Bacterial Proteins/ultrastructure , Binding Sites , Cross-Linking Reagents , Escherichia coli , Escherichia coli Proteins/ultrastructure , Fluorescence , Macromolecular Substances , Models, Biological , Peptidylprolyl Isomerase/ultrastructure , Protein Binding , Receptors, Cytoplasmic and Nuclear/ultrastructure , Ribosomes/chemistry , Signal Recognition Particle/chemistry , Signal Recognition Particle/ultrastructure
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