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1.
Int J Obstet Anesth ; 16(1): 22-8, 2007 Jan.
Article in English | MEDLINE | ID: mdl-17125998

ABSTRACT

BACKGROUND: The aim was to assess the effect of epidural sufentanil on relative analgesic potencies of epidural bupivacaine, ropivacaine and levobupivacaine by determining the minimum local analgesic concentrations during labour. METHODS: In a randomised, double-blind study, 171 parturients were allocated to one of six groups receiving a 10-mL bolus of bupivacaine, ropivacaine or levobupivacaine alone or with sufentanil 0.75 microg/mL. The concentration of local anaesthetic was determined by the response of the previous parturient using up-down sequential allocation starting at a concentration of 0.13% wt/vol with a testing interval of 0.01%. Effective analgesia was defined as a visual analogue pain score < or = 15/100 mm within 30 min and lasting for 30 min. Median effective concentrations were estimated and two-sided P < 0.05 was significant. RESULTS: Local anaesthetic concentration, use of sufentanil and local anaesthetic drug were independent significant predictors of effective and ineffective analgesia. Bupivacaine was significantly more potent than levobupivacaine and ropivacaine. The relative potency ratios without sufentanil of 0.77:0.83:1.00 were reduced to 0.36:0.38:1.00 by the addition of sufentanil. The major factor influencing local anaesthetic requirements was the addition of sufentanil, which reduced overall requirements by a factor of 4.2 (95% CI 3.6-4.8); this effect was proportionately more enhanced for bupivacaine. CONCLUSIONS: Local anaesthetic requirements for bupivacaine, levobupivacaine and ropivacaine follow an analgesic potency hierarchy. Any potency differences are small when compared to the effect of sufentanil, which resulted in a four-fold reduction in local anaesthetic requirements. Sufentanil may also enhance the potency differences between bupivacaine and the two S-enantiomer agents.


Subject(s)
Adjuvants, Anesthesia , Anesthesia, Epidural , Anesthesia, Obstetrical , Anesthetics, Combined/administration & dosage , Sufentanil/pharmacology , Adult , Amides/administration & dosage , Analgesia, Patient-Controlled , Analysis of Variance , Anesthetics, Local/administration & dosage , Bupivacaine/administration & dosage , Bupivacaine/analogs & derivatives , Double-Blind Method , Drug Synergism , Female , Humans , Labor Stage, First , Labor, Obstetric , Levobupivacaine , Pain Measurement/methods , Parity , Pregnancy , Ropivacaine
2.
Genet Med ; 6(5): 421-5, 2004.
Article in English | MEDLINE | ID: mdl-15371907

ABSTRACT

PURPOSE: We expect that the mutation panel currently recommended for preconception/prenatal CF carrier screening will be modified as new information is learned regarding the phenotype associated with specific mutations and allele frequencies in various populations. One such example is the I148T mutation, originally described as a severe CF mutation. After implementation of CF population-based carrier screening, we learned that I148T exists as a complex allele with 3199del6 in patients with clinical CF, whereas asymptomatic compound heterozygotes for I148T and a second severe CF mutation were negative for 3199del6. METHODS: We performed reflex testing for 3199del6 on 663 unrelated specimens, including I148T heterozygotes, compound heterozygotes, and a homozygous individual. RESULTS: Less than 1% of I148T carriers were also positive for 3199del6. Excluding subjects tested because of a suspected or known CF diagnosis or positive family history, 0.6% of I148T-positive individuals were also positive for 3199del6. We identified 1 I148T homozygote and 6 unrelated compound heterozygous individuals with I148T and a second CF variant (2 of whom also carried 3199del6). In addition, one fetus with echogenic bowel and one infertile male were heterozygous for I148T (3199del6 negative). CONCLUSIONS: Reflex testing for 3199del6 should be considered whenever I148T is identified. Reflex testing is of particular importance for any symptomatic patient or whenever one member of a couple carries a deleterious CF mutation and the other member is an I148T heterozygote. Further population data are required to determine if I148T, in the absence of 3199del6, is associated with mild or atypical CF or male infertility.


Subject(s)
Cystic Fibrosis/genetics , Mutation , Cystic Fibrosis Transmembrane Conductance Regulator/genetics , DNA Mutational Analysis , Female , Gene Frequency , Genotype , Heterozygote , Humans , Male , Phenotype
3.
Genes Dev ; 15(17): 2250-62, 2001 Sep 01.
Article in English | MEDLINE | ID: mdl-11544182

ABSTRACT

The retinoblastoma protein-interacting zinc finger gene RIZ (PRDM2) is a member, by sequence homology, of a nuclear protein-methyltransferase (MTase) superfamily involved in chromatin-mediated gene expression. The gene produces two protein products, RIZ1 that contains a conserved MTase domain and RIZ2 that lacks the domain. RIZ1 gene expression is frequently silenced in human cancers, and the gene is also a common target of frameshift mutation in microsatellite-unstable cancers. We now report studies of mice with a targeted mutation in the RIZ1 locus. The mutation inactivates RIZ1 but not RIZ2. These RIZ1 mutant mice were viable and fertile but showed a high incidence of diffuse large B-cell lymphomas (DLBL) and a broad spectrum of unusual tumors. RIZ1 deficiency also accelerated tumorigenesis in p53 heterozygous mutant mice. Finally, several missense mutations of RIZ1 were found in human tumor tissues and cell lines; one of these was particularly common in human DLBL tumors. These missense mutations, as well as the previously described frameshift mutation, all mapped to the MTase functional domains. All abolished the capacity of RIZ1 to enhance estrogen receptor activation of transcription. These data suggest a direct link between tumor formation and the MTase domain of RIZ1 and describe for the first time a tumor susceptibility gene among methyltransferases.


Subject(s)
DNA-Binding Proteins , Neoplasms/metabolism , Nuclear Proteins/metabolism , Nuclear Proteins/physiology , Retinoblastoma Protein/metabolism , Transcription Factors , Alleles , Amino Acid Sequence , Animals , Base Sequence , Blotting, Northern , Blotting, Southern , DNA Mutational Analysis , Frameshift Mutation , Genes, p53/genetics , Genetic Predisposition to Disease , Heterozygote , Histone-Lysine N-Methyltransferase , Humans , Immunoglobulin Heavy Chains/genetics , Karyotyping , Mice , Microsatellite Repeats , Models, Genetic , Molecular Sequence Data , Multigene Family , Mutagenesis, Site-Directed , Mutation , Mutation, Missense , Neoplasms/genetics , Protein Binding , Protein Structure, Tertiary , Receptors, Estrogen/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Time Factors , Transcriptional Activation , Tumor Cells, Cultured
4.
Br J Cancer ; 84(6): 743-7, 2001 Mar 23.
Article in English | MEDLINE | ID: mdl-11259086

ABSTRACT

The RIZ (PRDM2) locus commonly undergoes loss of heterozygosity (LOH) and maps within the minimal deleted region on 1p36 in hepatocellular carcinoma (HCC). Although peptide-altering mutations of RIZ are rare in HCC, the RIZ1 product is commonly lost in HCC and has tumour suppressive activities. Here, we analysed RIZ gene mutations and LOH in HCC, breast cancer, familial melanoma, colon cancer, and stomach cancer. We found 7 polymorphisms but no mutations. By analysing the Pro704-deletion polymorphism, we detected LOH of RIZ in 31 of 79 (39%) informative HCC cases, 11 of 47 (23%) colon cancer cases, 8 of 43 (19%) breast cancer cases, 8 of 66 (12%) stomach cancer cases. Importantly, loss of the Pro704(+)allele was found in 74% of the 31 LOH positive HCC cases (P< 0.01), indicating a preferential loss and hence a stronger tumour suppressor role for this allele compared to the P704(-)allele. In addition, the Pro704(+)allele was found to be more common in Asians (0.61) than Caucasians (0.42) (P = 0.0000), suggesting an interesting link between gene polymorphisms and potential differences in tumour incidence between racial groups.


Subject(s)
Alleles , Carcinoma, Hepatocellular/genetics , Chromosome Deletion , DNA-Binding Proteins , Liver Neoplasms/genetics , Nuclear Proteins/genetics , Polymorphism, Genetic , Transcription Factors , Base Sequence , Breast Neoplasms/genetics , DNA Primers , Histone-Lysine N-Methyltransferase , Humans , Melanoma/genetics , Mutation
5.
Am J Hum Genet ; 67(6): 1428-36, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11055898

ABSTRACT

Rett syndrome (RTT) is an X-linked dominant neurodevelopmental disorder affecting 1/10,000-15,000 girls. The disease-causing gene was identified as MECP2 on chromosome Xq28, and mutations have been found in approximately 80% of patients diagnosed with RTT. Numerous mutations have been identified in de novo and rare familial cases, and they occur primarily in the methyl-CpG-binding and transcriptional-repression domains of MeCP2. Our first diagnostic strategy used bidirectional sequencing of the entire MECP2 coding region. Subsequently, we implemented a two-tiered strategy that used denaturing high-performance liquid chromatography (DHPLC) for initial screening of nucleotide variants, followed by confirmatory sequencing analysis. If a definite mutation was not identified, then the entire MECP2 coding region was sequenced, to reduce the risk of false negatives. Collectively, we tested 228 unrelated female patients with a diagnosis of possible (209) or classic (19) RTT and found MECP2 mutations in 83 (40%) of 209 and 16 (84%) of 19 of the patients, respectively. Thirty-two different mutations were identified (8 missense, 9 nonsense, 1 splice site, and 14 frameshifts), of which 12 are novel and 9 recurrent in unrelated patients. Seven unclassified variants and eight polymorphisms were detected in 228 probands. Interestingly, we found that T203M, previously reported as a missense mutation in an autistic patient, is actually a benign polymorphism, according to parental analysis performed in a second case identified in this study. These findings highlight the complexities of missense variant interpretation and emphasize the importance of parental DNA analysis for establishing an etiologic relation between a possible mutation and disease. Overall, we found a 98.8% concordance rate between DHPLC and sequence analyses. One mutation initially missed by the DHPLC screening was identified by sequencing. Modified conditions subsequently enabled its detection, underscoring the need for multiple optimized conditions for DHPLC analysis. We conclude that this two-tiered approach provides a sensitive, robust, and efficient strategy for RTT molecular diagnosis.


Subject(s)
Chromosomal Proteins, Non-Histone , DNA-Binding Proteins/genetics , Genetic Testing/methods , Mutation/genetics , Polymorphism, Genetic/genetics , Repressor Proteins , Rett Syndrome/diagnosis , Rett Syndrome/genetics , Alleles , Amino Acid Substitution/genetics , Base Sequence , Chromatography, High Pressure Liquid/methods , DNA Mutational Analysis/methods , False Negative Reactions , Female , Genetic Variation/genetics , Humans , Male , Methyl-CpG-Binding Protein 2 , Molecular Sequence Data , Pedigree , Prenatal Diagnosis/methods , Reproducibility of Results , Sensitivity and Specificity , Sequence Analysis, DNA
6.
Int J Cancer ; 83(4): 541-6, 1999 Nov 12.
Article in English | MEDLINE | ID: mdl-10508492

ABSTRACT

The distal short arm of human chromosome 1 (1p36) is commonly altered in primary hepatoma tumors and cell lines. This region includes the RIZ gene, a member of the PR (PRDI-BF1/BLIMP1 and RIZ homology) domain family of transcription factors. An unusual feature of this family is the yin-yang involvement in human cancers. Two products are normally produced from a PR family member which differ by the presence or absence of the PR domain; the PR-plus product is disrupted or underexpressed whereas the PR-minus product is present or overexpressed in cancer cells. The PR-plus product RIZ1 is a candidate tumor suppressor because it can induce G(2)/M arrest and/or apoptosis and is commonly underexpressed in breast cancer. Here, we have investigated the role of RIZ in hepatoma. RIZ1 transcript was undetectable in 80% of hepatoma cell lines (8 of 10 lines examined). RIZ1 expression was also decreased in hepatoma tumor specimens. In contrast, RIZ2 transcript was uniformly present in all samples examined. Adenovirus-mediated RIZ1 expression in hepatoma cell lines caused cell cycle arrest in G(2)/M and/or programmed cell death. RIZ1 expression also suppressed tumorigenicity of hepatoma cells in nude mice. Our observations reinforce the yin-yang notion of RIZ gene products in human cancer and suggest a RIZ1 tumor suppressor role in hepatoma.


Subject(s)
Carcinoma, Hepatocellular/metabolism , DNA-Binding Proteins , Liver Neoplasms/metabolism , Nuclear Proteins/biosynthesis , Transcription Factors , Animals , Apoptosis , Carcinoma, Hepatocellular/pathology , Cell Cycle/genetics , Cell Division/genetics , DNA/metabolism , Histone-Lysine N-Methyltransferase , Humans , Immunoblotting , Liver Neoplasms/pathology , Mice , Mice, Nude , Neoplasm Transplantation , Nuclear Proteins/genetics , Nuclear Proteins/physiology , RNA, Messenger/biosynthesis , Reverse Transcriptase Polymerase Chain Reaction , Time Factors , Transfection , Tumor Cells, Cultured
7.
Transplantation ; 68(12): 1855-8, 1999 Dec 27.
Article in English | MEDLINE | ID: mdl-10628764

ABSTRACT

BACKGROUND: At our transplant center, primary recipients of either a haplo-identical (haplo-ID) living related (LRD) or a cadaveric (CAD) donor renal allograft are transplanted after a negative donor-specific IgG anti-human globulin (AHG) cross-match (XM). Testing included the historically highest panel-reactive antibody and the immediate (0-7 days) pretransplant sera. A positive donor specific IgM-AHG XM has not been a contraindication to transplant. Reports suggest that donor-specific flow cytometry cross-matches (FCXM) may be more clinically informative than the AHG-XM. METHODS: We therefore evaluated the impact of a positive FCXM (IgG or IgM) on the rejection frequency (0-12 months after transplant) and 1-year graft survival for cyclosporine-prednisone-treated primary (haplo-ID and CAD) renal allograft recipients. All transplants were performed after a negative donor-specific IgG AHG-XM regardless of the IgM-AHG XM status. RESULTS: Rejection frequencies (26% vs. 31%, P = NS) and 1-year graft survivals (92% vs. 89%, P = NS) were comparable for haplo-ID LRD FCXM-negative and IgG-FCXM-positive recipients. However, IgM-FCXM-positive LRD recipients experienced significantly fewer rejections (13% vs. 26% P<0.02) and an improved 1-year graft survival (100% vs. 92%, P<0.02) than FCXM-negative LRD recipients. Similar results were observed for primary CAD recipients. Rejection frequencies (40% vs. 44%, P = NS) and 1-year graft survivals (83% vs. 81%, P = NS) were comparable for primary CAD FCXM-negative and IgG-FCXM-positive recipients. Again, IgM-FCXM-positive primary CAD recipients experienced significantly fewer rejections (22% vs. 40%, P<0.02) and improved 1-year graft survivals (89% vs. 83%, P<0.05) than FCXM-negative recipients. CONCLUSION: These data suggest that, after a negative donor-specific IgG-AHG XM, an IgG-positive FCXM is not a contraindication to transplantation. The presence of IgM may be beneficial in reducing the occurrence of rejection episodes and improving graft survivals.


Subject(s)
Flow Cytometry , Immunoglobulin G/analysis , Kidney Transplantation , Contraindications , Cyclosporine/therapeutic use , Female , Glucocorticoids/therapeutic use , Graft Rejection/epidemiology , Graft Survival , Histocompatibility Testing/methods , Humans , Immunoglobulin M/analysis , Immunosuppressive Agents/therapeutic use , Incidence , Male , Prednisone/therapeutic use , Time Factors , Tissue Donors
8.
Tissue Antigens ; 52(3): 294-9, 1998 Sep.
Article in English | MEDLINE | ID: mdl-9802612

ABSTRACT

Four novel HLA Class II alleles were identified using CANTYPE reverse hybridization assay. The initial unusual SSO hybridization patterns were confirmed by cloning and sequencing analysis. DRB3*0208 allele is identical to DRB3*0202 except for three nucleotide substitutions (GAT-->AGC) changing codon 57 from Asp to Ser. This polymorphism has so far been undetected in DRB3 alleles. DRB1*15023 differs from DRB1*15021 by a single silent nucleotide substitution (AAC-->AAT, both encoding for Asn) at codon 33. This polymorphism has not, until now, been identified in DRB alleles. Compared with DQB1*03011, the novel DQB1*03012 contains a single silent nucleotide substitution (GCA-->GCG, both encoding for Ala) at codon 38. Finally, DQB1*0614 allele is identical to DQB1*0603 except for a single nucleotide substitution (TAC-->TTC), changing codon 9 from Tyr to Phe. Polymorphisms observed here in the DQB1*03012 and DQB1*0614 alleles are present in several of the known DQB1 alleles. DRB3*0208, DQB1*03012 and DQB1*0614 may have arisen from gene conversion, but the DRB1*15023 most likely was generated by a point mutation event. DQB1*0614 was detected in three related subjects, while each of the other three new alleles has only been detected once.


Subject(s)
Alleles , HLA-DQ Antigens/genetics , HLA-DR Antigens/genetics , Base Sequence , Cloning, Molecular , Female , HLA-DQ beta-Chains , HLA-DRB3 Chains , Histocompatibility Antigens Class II/genetics , Histocompatibility Testing , Humans , Male , Molecular Sequence Data , Pedigree , Sequence Alignment , Sequence Analysis, DNA
9.
Cancer Res ; 58(19): 4238-44, 1998 Oct 01.
Article in English | MEDLINE | ID: mdl-9766644

ABSTRACT

The retinoblastoma protein-interacting zinc finger gene RIZ maps to the distal short arm of human chromosome 1 (1p36), a region thought to harbor tumor suppressor genes for a variety of human cancers including breast cancer. The RIZ gene normally produces two protein products of different length, RIZ1 and RIZ2. RIZ2 is generated by an internal promoter and lacks an NH2-terminal motif of RIZ1, the PR domain conserved in a subfamily of zinc finger genes that function as negative regulators of tumorigenesis. We have here studied whether the RIZ gene may play a role in human neoplasia. We found that expression of RIZ1 is commonly decreased or at undetectable levels in breast cancer tissues and cell lines. Decreased RIZ1 expression was also found in other tumor types including neuroblastoma and lung cancer. Remarkably, RIZ2 is normally expressed in all cases examined, suggesting that the abnormality observed for RIZ1 is specific. Forced RIZ1 expression in breast cancer cells caused cell cycle arrest in G2-M and/or programmed cell death. These observations suggest an exclusive negative selection for RIZ1 but not RIZ2 in breast cancer and a role for RIZ1 in tumor suppression.


Subject(s)
Alternative Splicing , Breast Neoplasms/genetics , Breast Neoplasms/pathology , Chromosomes, Human, Pair 1 , DNA-Binding Proteins , Nuclear Proteins/biosynthesis , Nuclear Proteins/genetics , Transcription Factors , Apoptosis/genetics , Bone Neoplasms/genetics , Bone Neoplasms/pathology , Brain Neoplasms/genetics , Brain Neoplasms/pathology , Breast/cytology , Breast/metabolism , Cell Cycle/genetics , Cell Division , Chromosome Mapping , Female , G2 Phase , Histone-Lysine N-Methyltransferase , Humans , In Situ Nick-End Labeling , Kinetics , Lung Neoplasms/genetics , Lung Neoplasms/pathology , Mitosis , Neuroblastoma/genetics , Neuroblastoma/pathology , Osteosarcoma/genetics , Osteosarcoma/pathology , Reverse Transcriptase Polymerase Chain Reaction , Tumor Cells, Cultured , Zinc Fingers
10.
Tissue Antigens ; 51(6): 658-62, 1998 Jun.
Article in English | MEDLINE | ID: mdl-9694360

ABSTRACT

Three novel HLA class II alleles (DRB1*1333, DRB1*0426, DRB5*0109) are described here. The 3 novel alleles were initially detected as previously unidentified SSO hybridization patterns using the CANTYPE reverse hybridization assay. Sequences were determined by cloning/sequencing. DRB1*1333 is identical to DRB1*1303 except for a single nucleotide substitution (ACC-->AAC), changing codon 77 from Thr to Asn. This polymorphism is typical for DRB1*03 alleles. DRB1*0426 is identical to DRB1*0401 except for a single nucleotide substitution (GCC-->ACC) at codon 58, changing the encoded Ala to Thr. DRB5*0109 is identical to DRB5*0101, except for a single nucleotide substitution (GAC-->AAC), changing codon 70 from Asp to Asn. Both latter polymorphisms were so far undetected in DRB alleles. DRB1*1333 could have arisen from a gene conversion event, but DRB1*0426 and DRB5*0109 most likely were generated by point mutation events. For all 3 alleles, the sequence was confirmed by the original hybridization pattern (DRB1*1333) or by hybridization to a newly designed probe (DRB1*0426 and DRB5*0109). Ethnic backgrounds were Lebanese for DRB1*1333 and Caucasian for DRB1*0426 and DRB5*0109.


Subject(s)
Alleles , HLA-DR Antigens/genetics , Base Sequence , DNA , HLA-DRB1 Chains , HLA-DRB5 Chains , Humans , Molecular Sequence Data
12.
Tissue Antigens ; 51(5): 577-81, 1998 May.
Article in English | MEDLINE | ID: mdl-9672161

ABSTRACT

We report here the identification of four novel DRB alleles using a reverse hybridization (CANTYPE) assay. Molecular cloning and sequencing confirmed the initial unusual hybridization patterns. All four new alleles were detected during routine HLA typing for the Canadian Unrelated Bone Marrow Donor Registry. DRB1*0703 is identical to DRB1*0701 except for a single nucleotide substitution (AGA-->AGT), changing codon 29 from Arg to Ser, a so far undetected DRB polymorphism. DRB1*0817 differs from DRB1*0801 by a single nucleotide substitution (TAC-->TTC), changing codon 47 from Tyr to Phe. This polymorphism has not, until now, been identified in DRB1*08 alleles. Compared with DRB3*0301, DRB3*0302 contains a single nucleotide substitution (TAC-->CAC) at codon 30, changing the encoded Tyr to His. This polymorphism is typical for DRB3*02 alleles. DRB3*01014 is identical to DRB3*0101 except for a single silent nucleotide substitution (GGG-->GGA) at codon 84. This polymorphism has previously only been described for the DRB1*15012 allele. DRB1*0817, DRB3*0302 and DRB3*01014 may have arisen from gene conversion, but DRB1*0703 most likely was generated by a point mutation event. The DRB3*0302 allele was detected in two unrelated subjects, while the other three have each only been detected once.


Subject(s)
Alleles , HLA-DR Antigens/genetics , Base Sequence , DNA, Complementary , HLA-DR Antigens/classification , HLA-DRB1 Chains , HLA-DRB3 Chains , Humans , Molecular Sequence Data
13.
J Biol Chem ; 272(42): 26360-6, 1997 Oct 17.
Article in English | MEDLINE | ID: mdl-9334209

ABSTRACT

The RIZ (G3B or MTB-Zf) zinc finger gene is structurally related to the myeloid leukemia gene, MDS1-EVI1, and the transcription repressor/differentiation factor, PRDI-BF1/BLIMP1, through a conserved amino-terminal motif, the PR domain. Similar to MDS1-EVI1, RIZ gene normally produces two protein products that differ by the PR domain. The smaller protein RIZ2 lacks the PR domain of RIZ1 but is otherwise identical to RIZ1. Here we show that RIZ proteins bind to GC-rich or Sp-1-binding elements and repress transcription. Both RIZ1 and RIZ2 repressed the herpes simplex virus thymidine kinase (HSV-TK) promoter, one of the best characterized eukaryotic promoters. Recombinant RIZ1 proteins were able to bind to HSV-TK promoter. This binding was mediated by the GC-rich Sp-1 elements of the promoter and the first three zinc finger motifs of RIZ1. RIZ also encodes a repressor domain that was mapped to the central region of the protein. Fusion of this region to the GAL4 DNA-binding domain generated GAL4 site-dependent transcriptional repressors. We also show that RIZ1 protein can efficiently repress the simian virus 40 (SV40) early promoter, which primarily consists of Sp-1 sites; RIZ2, however, only weakly repressed this promoter, suggesting a role for PR in modulating RIZ protein function. The data have implications for a role of RIZ proteins in the regulation of cellular gene promoters, many of which are characterized by GC-rich elements.


Subject(s)
Transcription, Genetic , Zinc Fingers/genetics , 3T3 Cells , Animals , Base Sequence , DNA, Recombinant , DNA-Binding Proteins/genetics , Mice , Molecular Sequence Data
14.
Tissue Antigens ; 50(3): 291-302, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9331952

ABSTRACT

A three-step reverse hybridization assay for allele level-resolution DRB1-DRB3-DRB4-DRB5 genotyping is described. Samples are initially amplified using a generic primer pair for all DRB1-DRB3-DRB4-DRB5 alleles and PCR products are hybridized to generic typing membranes. An intermediate-resolution level genotyping is obtained at this point. Depending on the phenotype, samples are then subjected to a DR1, DR2, DR4, DR52A, DRB3 and/or DRB5 type-specific amplification and hybridization. A third step, involving sequence-specific PCR followed by type-specific hybridization, is only performed to solve certain DR4 and DR52A heterozygous combinations. The assay allows 100% allele level-resolution DRB genotyping. Hybridization membranes contain panels of SSO probes that were optimized to all react specifically under identical stringency conditions. A computer program was written to assist in analysis of the hybridization patterns. The assay was throughly evaluated and has been used to type over 10,000 donors from the Canadian Unrelated Bone Marrow Donor Registry (UBMDR) at allele level-resolution. This method proved to be flexible, easy to update for newly described alleles, easy to perform, fast, and safe. It is also reliable and specific, as 9 novel DRB alleles so far have been detected as aberrant hybridization patterns.


Subject(s)
HLA-DR Antigens/genetics , Alleles , Genotype , HLA-DRB1 Chains , HLA-DRB3 Chains , HLA-DRB4 Chains , HLA-DRB5 Chains , Humans , Oligonucleotide Probes , Polymerase Chain Reaction/methods , Polymorphism, Genetic , Sequence Analysis, DNA
15.
J Virol ; 71(8): 6200-3, 1997 Aug.
Article in English | MEDLINE | ID: mdl-9223517

ABSTRACT

The RIZ (G3B/MTB-Zf) gene was first isolated based on its ability to bind to the retinoblastoma protein (Rb). An acidic, approximately 100-amino-acid region around the Rb-binding motif of RIZ has structural and antigenic similarity to the conserved sequences of the E1A viral oncogene. We show here that this region interacts specifically with the E1A-binding domain of Rb. This interaction could be disrupted by E1A or by a peptide of RIZ homologous to the CR2 motif of E1A which is involved in binding to Rb family proteins. Also like E1A, RIZ can form a ternary complex with Rb and E2F1. Despite this similarity to E1A, however, RIZ could not bind to the Rb family proteins p107 and p130 in vitro. The data show that the RIZ CR2 motif can mediate differential binding to Rb family proteins. We also mapped the shared antigenic determinant between RIZ and E1A to a conserved sequence, designated CE1, which is located in the C terminus of E1A. Unlike that of ETA, the CE1 motif of RIZ is located next to the CR2 motif. Despite this proximity, CE1 and CR2 appear to act independently. The data show similarities as well as differences between the homologous sequences of RIZ and E1A and contribute to an understanding of the biochemistry of these proteins.


Subject(s)
Adenovirus E1A Proteins/chemistry , DNA-Binding Proteins , Nuclear Proteins/chemistry , Transcription Factors , Amino Acid Sequence , Binding Sites , Histone-Lysine N-Methyltransferase , Molecular Sequence Data , Nuclear Proteins/metabolism , Retinoblastoma Protein/metabolism
18.
Genomics ; 34(1): 119-21, 1996 May 15.
Article in English | MEDLINE | ID: mdl-8661032

ABSTRACT

The retinoblastoma interacting zinc finger gene RIZ is a member of the recently discovered PR domain family that includes the MDS1-EVI1 breakpoint gene involved in human leukemia. To help understand the role of RIZ in human diseases, we have determined the cytogenetic and physical localizations of the RIZ gene. Using fluorescence in situ hybridization, we determined that RIZ maps to 1p36. On the physical map, RIZ is adjacent to the polymorphic marker D1S228. We suggest that the RIZ gene may be a candidate target of 1p36 alterations that commonly occur in neuroendocrine, breast, liver, colon, and lymphoid tumors.


Subject(s)
Chromosomes, Human, Pair 1 , DNA-Binding Proteins , Nuclear Proteins/genetics , Transcription Factors , Base Sequence , Chromosome Mapping , Chromosomes, Artificial, Yeast , Genetic Markers , Histone-Lysine N-Methyltransferase , Humans , In Situ Hybridization, Fluorescence , Molecular Sequence Data
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