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1.
Am J Med Genet A ; 173(11): 2973-2984, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28948692

ABSTRACT

The molecular mechanisms linking folate deficiency and neural tube defect (NTD) risk in offspring remain unclear. Folate transporters (SLC19A1, SLC46A1, SLC25A32, and FOLH1) and folate receptors (FOLR1, FOLR2, and FOLR3) are suggested to play essential roles in transporting folate from maternal intestinal lumen to the developing embryo. Loss of function variants in these genes may affect folate availability and contribute to NTD risk. This study examines whether variants within the folate transporter and receptor genes are associated with an increased risk for myelomeningocele (MM). Exons and their flanking intron sequences of 348 MM subjects were sequenced using the Sanger sequencing method and/or next generation sequencing to identify variants. Frequencies of alleles of single nucleotide polymorphisms (SNPs) in MM subjects were compared to those from ethnically matched reference populations to evaluate alleles' associated risk for MM. We identified eight novel variants in SLC19A1 and twelve novel variants in FOLR1, FOLR2, and FOLR3. Pathogenic variants include c.1265delG in SLC19A1 resulting in an early stop codon, four large insertion deletion variants in FOLR3, and a stop_gain variant in FOLR3. No new variants were identified in SLC46A1, SLC25A32, or FOLH1. In SLC19A1, c.80A>G (rs1051266) was not associated with our MM cohort; we did observe a variant allele G frequency of 61.7%, higher than previously reported in other NTD populations. In conclusion, we discovered novel loss of function variants in genes involved in folate transport in MM subjects. Our results support the growing evidence of associations between genes involved in folate transport and susceptibility to NTDs.


Subject(s)
Carrier Proteins/genetics , Folate Receptor 1/genetics , Folate Receptor 2/genetics , Meningomyelocele/genetics , Reduced Folate Carrier Protein/genetics , Alleles , Exons/genetics , Female , Folic Acid/genetics , Folic Acid/metabolism , Genetic Predisposition to Disease , Humans , Male , Meningomyelocele/physiopathology , Mutation , Neural Tube Defects/genetics , Polymorphism, Single Nucleotide , Risk Factors
2.
J Gene Med ; 15(1): 28-41, 2013 Jan.
Article in English | MEDLINE | ID: mdl-23293075

ABSTRACT

BACKGROUND: Type 1 diabetes (T1D) results from an autoimmune attack against the insulin-producing ß-cells of the pancreas. The present study aimed to reverse T1D by gene therapy. METHODS: We used a novel surgical technique, which involves isolating the liver from the circulation before the delivery of a lentiviral vector carrying furin-cleavable human insulin (INS-FUR) or empty vector to the livers of diabetic non-obese diabetic mice (NOD). This was compared with the direct injection of the vector into the portal circulation. Mice were monitored for body weight and blood glucose. Intravenous glucose tolerance tests were performed. Expression of insulin and pancreatic transcription factors was determined by the reverse transcriptase-polymerase chain reaction and immunohistochemistry and immunoelectron microscopy was used to localise insulin. RESULTS: Using the novel surgical technique, we achieved long-term transduction (42% efficiency) of hepatocytes, restored normoglycaemia for 150 days (experimental endpoint) and re-established normal glucose tolerance. We showed the expression of ß-cell transcription factors, murine insulin, glucagon and somatostatin, and hepatic storage of insulin in granules. The expression of hepatic markers, C/EBP-ß, G6PC, AAT and GLUI was down-regulated in INS-FUR-treated livers. Liver function tests remained normal, with no evidence of intrahepatic inflammation or autoimmune destruction of the insulin-secreting liver tissue. By comparison, direct injection of INS-FUR reduced blood glucose levels, and no pancreatic transdifferentiation or normal glucose tolerance was observed. CONCLUSIONS: This gene therapy protocol has, for the first time, permanently reversed T1D with normal glucose tolerance in NOD mice and, as such, represents a novel therapeutic strategy for the treatment of T1D.


Subject(s)
Diabetes Mellitus, Type 1/therapy , Genetic Therapy/methods , Liver/metabolism , Alanine Transaminase/blood , Animals , Aspartate Aminotransferases/blood , Basic Helix-Loop-Helix Transcription Factors/genetics , Basic Helix-Loop-Helix Transcription Factors/metabolism , Blood Glucose/analysis , Cell Transdifferentiation/drug effects , Female , Furin/metabolism , Genetic Vectors , Glucagon/genetics , Glucagon/metabolism , Glucose Tolerance Test , Hepatocytes/metabolism , Homeobox Protein Nkx-2.2 , Homeodomain Proteins/genetics , Homeodomain Proteins/metabolism , Insulin/biosynthesis , Insulin/blood , Insulin-Secreting Cells/metabolism , Lentivirus/genetics , Mice , Mice, Inbred NOD , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Oligonucleotide Array Sequence Analysis , Paired Box Transcription Factors/genetics , Paired Box Transcription Factors/metabolism , Somatostatin/genetics , Somatostatin/metabolism , Trans-Activators/genetics , Trans-Activators/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , Transduction, Genetic , Zebrafish Proteins
3.
Birth Defects Res A Clin Mol Teratol ; 88(8): 689-94, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20683905

ABSTRACT

BACKGROUND: Meningomyelocele (MM) results from lack of closure of the neural tube during embryologic development. Periconceptional folic acid supplementation is a modifier of MM risk in humans, leading toan interest in the folate transport genes as potential candidates for association to MM. METHODS: This study used the SNPlex Genotyping (ABI, Foster City, CA) platform to genotype 20 single polymorphic variants across the folate receptor genes (FOLR1, FOLR2, FOLR3) and the folate carrier gene (SLC19A1) to assess their association to MM. The study population included 329 trio and 281 duo families. Only cases with MM were included. Genetic association was assessed using the transmission disequilibrium test in PLINK. RESULTS: A variant in the FOLR2 gene (rs13908), three linked variants in the FOLR3 gene (rs7925545, rs7926875, rs7926987), and two variants in the SLC19A1 gene (rs1888530 and rs3788200) were statistically significant for association to MM in our population. CONCLUSION: This study involved the analyses of selected single nucleotide polymorphisms across the folate receptor genes and the folate carrier gene in a large population sample. It provided evidence that the rare alleles of specific single nucleotide polymorphisms within these genes appear to be statistically significant for association to MM in the patient population that was tested.


Subject(s)
Carrier Proteins/genetics , Folate Receptor 1/genetics , Folate Receptor 2/genetics , Meningomyelocele/genetics , Reduced Folate Carrier Protein/genetics , Adolescent , Adult , Child , Child, Preschool , Cohort Studies , Female , Genetic Association Studies , Genetic Linkage , Hispanic or Latino/genetics , Humans , Infant , Male , Middle Aged , Polymorphism, Single Nucleotide , White People/genetics , Young Adult
4.
Birth Defects Res A Clin Mol Teratol ; 82(10): 692-700, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18937358

ABSTRACT

BACKGROUND: Meningomyelocele (MM) is a common human birth defect. MM is a disorder of neural development caused by contributions from genes and environmental factors that result in the NTD and lead to a spectrum of physical and neurocognitive phenotypes. METHODS: A multidisciplinary approach has been taken to develop a comprehensive understanding of MM through collaborative efforts from investigators specializing in genetics, development, brain imaging, and neurocognitive outcome. Patients have been recruited from five different sites: Houston and the Texas-Mexico border area; Toronto, Canada; Los Angeles, California; and Lexington, Kentucky. Genetic risk factors for MM have been assessed by genotyping and association testing using the transmission disequilibrium test. RESULTS: A total of 509 affected child/parent trios and 309 affected child/parent duos have been enrolled to date for genetic association studies. Subsets of the patients have also been enrolled for studies assessing development, brain imaging, and neurocognitive outcomes. The study recruited two major ethnic groups, with 45.9% Hispanics of Mexican descent and 36.2% North American Caucasians of European descent. The remaining patients are African-American, South and Central American, Native American, and Asian. Studies of this group of patients have already discovered distinct corpus callosum morphology and neurocognitive deficits that associate with MM. We have identified maternal MTHFR 667T allele as a risk factor for MM. In addition, we also found that several genes for glucose transport and metabolism are potential risk factors for MM. CONCLUSIONS: The enrolled patient population provides a valuable resource for elucidating the disease characteristics and mechanisms for MM development.


Subject(s)
Meningomyelocele/ethnology , Meningomyelocele/genetics , Spinal Dysraphism/ethnology , Spinal Dysraphism/genetics , Adolescent , Adult , Child , Child, Preschool , Data Collection , Family , Female , Hispanic or Latino/genetics , Humans , Infant , Male , Meningomyelocele/complications , Middle Aged , Population Groups , Spinal Dysraphism/etiology , Surveys and Questionnaires , White People/genetics
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