Implications of the use of organic fertilizers for antibiotic resistance gene distribution in agricultural soils and fresh food products. A plot-scale study.

The spread of antibiotic resistance genes (ARG) into agricultural soils, products, and foods severely limits the use of organic fertilizers in agriculture. In order to help designing agricultural practices that minimize the spread of ARG, we fertilized, sown, and harvested lettuces and radish plants in experimental land plots for two consecutive agricultural cycles using four types of fertilizers: mineral fertilization, sewage sludge, pig slurry, or composted organic fraction of municipal solid waste. The analysis of the relative abundances of more than 200,000 ASV (Amplicon Sequence Variants) identified a small, but significant overlap (<10%) between soil's and fertilizer microbiomes. Clinically relevant ARG were found in higher loads (up to 100 fold) in fertilized soils than in the initial soil, particularly in those treated with organic fertilizers, and their loads grossly correlated to the amount of antibiotic residues found in the corresponding fertilizer. Similarly, low, but measurable ARG loads were found in lettuce (tetM, sul1) and radish (sul1), corresponding the lowest values to samples collected from minerally fertilized fields. Comparison of soil samples collected along the total period of the experiment indicated a relatively year-round stability of soil microbiomes in amended soils, whereas ARG loads appeared as unstable and transient. The results indicate that ARG loads in soils and foodstuffs were likely linked to the contribution of bacteria from organic fertilizer to the soil microbiomes, suggesting that an adequate waste management and good pharmacological and veterinarian practices may significantly reduce the presence of these ARGs in agricultural soils and plant products.

Metabolomic and phenotypic implications of the application of fertilization products containing microcontaminants in lettuce (Lactuca sativa).

Cultivation practice using organic amendments is plausible to ensure global food security. However, plant abiotic stress due to the presence of metals and organic microcontaminants (OMCs) in fertilization products cannot be overlooked. In this study, we monitored lettuce metabolism and phenotypic response following the application of either sewage sludge (SS), the organic fraction of municipal solid waste, swine manure (SM), chemical fertilizers (CF), or no amendment (C) in a greenhouse facility. The experimental set-up consisted of five treatments with five replicates (25 experimental units randomly distributed). All fertilizers were supplied at the equivalent agronomic total nitrogen dose, but the occurrence of trace metals and/or OMCs was greater in the SS and SM than the rest. Non-target metabolomic analysis (high-resolution mass spectrometry coupled with partial least squares regression) identified more than 300 plant metabolites (amino acids, organic acids, sugar alcohols, and sugars), 55 of which showed significant changes in their relative abundances depending on the type of amendment. Functional analysis indicated that the use of CF or SS increased the levels of metabolites involved in carbohydrate and nitrogen metabolism. Therefore, although SS and SM fertilizers had a greater presence of heavy metals and/or OMCs, our results indicate that they did not induce measurable adverse effects in the lettuce phenotype or metabolism. Metabolic changes between fertilizers (CF and SS vs. C and SM) were mainly due to nitrogen availability.

Assessing the evolution of wheat grain traits during the last 166 years using archived samples.

The current study focuses on yield and nutritional quality changes of wheat grain over the last 166 years. It is based on wheat grain quality analyses carried out on samples collected between 1850 and 2016. Samples were obtained from the Broadbalk Continuous Wheat Experiment (UK) and from herbaria from 16 different countries around the world. Our study showed that, together with an increase in carbohydrate content, an impoverishment of mineral composition and protein content occurred. The imbalance in carbohydrate/protein content was specially marked after the 1960's, coinciding with strong increases in ambient [CO2] and temperature and the introduction of progressively shorter straw varieties. The implications of altered crop physiology are discussed.

Dose effect of Zn and Cu in sludge-amended soils on vegetable uptake of trace elements, antibiotics, and antibiotic resistance genes: Human health implications.

The application of sewage sludge to agricultural fields reduces the need for mineral fertilizers by increasing soil organic matter, but may also increase soil pollution. Previous studies indicate that zinc and copper, as the most abundant elements in sewage sludge, affect plant uptake of other contaminants. This paper aims to investigate and compare the effect of increasing amounts of Zn and Cu in sludge-amended soils on the accumulation of trace elements (TEs), antibiotics (ABs), and antibiotic resistance genes (ARGs) in lettuce and radish. The vegetables were grown under controlled conditions, and the influence on plant physiology and human health were also evaluated. The results show that the addition of Zn and Cu significantly increased the concentration of TEs in the edible tissue of both vegetables. According to the hazard quotient (HQ) of the TEs, the human health risk increased 2 to 3 times and was 3-4 times greater in lettuce than in radish. In contrast to the TEs, the occurrence of ABs and most of the ARGs was higher in radish roots than lettuce leaves. ABs were not detected in lettuce leaves, and the amount of all ARGs except blaTEM was 10 times lower than in radish roots. On the other hand, the addition of Zn and Cu had no significant effect on the occurrence of ABs and ARGs in the edible part of the vegetables, and no damage was found to plant productivity or physiology. The results show that the consumption of lettuce and radish grown in sewage-sludge-amended soils under tested doses of Cu and Zn does not pose an adverse human health effect, as the total HQ value was always less than 1, and the presence of ABs and ARGs was not found to have any potential impact. Nevertheless, further studies are needed to estimate the long-term effect on human health of crops grown under frequent application of biosolids in arable soil.

Occurrence and human health risk assessment of antibiotics and trace elements in Lactuca sativa amended with different organic fertilizers.

Soil amendment with organic fertilizers is an effective approach to improve soil fertility. However, organic fertilizers may contain pollutants such as trace elements (TEs) and antibiotics (ABs), which, once deployed in arable soil, can be taken up by vegetables and have adverse effects on crops and human health. This study assesses the presence of 15 TEs and 16 ABs in lettuce grown in a greenhouse facility and amended with 3 different organic fertilizers (sewage sludge (SS), organic fraction of municipal solid waste (OFMSW), and swine manure (SM)) at 3 different fertilization doses. The results show that lettuces amended with SS resulted in the lowest content of TEs. Although 11 ABs were detected in the SM and SS fertilizers, only 3 ABs were detected in lettuce leaves. The concentrations of detected ABs in lettuce ranged from 0.67 ng/g fw (lincomycin) to 14.2 ng/g fw (ciprofloxacin) in SS. The organic fertilization dose did not affect the lettuce uptake of TEs or ABs. Moreover, the use of SS resulted in the highest lettuce yield of the organic amendments. The total hazard quotients (THQs) obtained for TEs and ABs were less than 1 for all the studied fertilization treatments. The highest THQs for TEs were observed in lettuce amended with SM (0.11-0.16), whereas the highest THQs for ABs were observed in SS treatments (0.06-0.09). The results thus suggest that consumption of lettuces amended with organic fertilizers would not pose a risk to human health due to the presence of studied TEs or ABs, but potentially harmful combined effects cannot ruled out.

Occurrence and human health implications of chemical contaminants in vegetables grown in peri-urban agriculture.

Recent studies have proven that vegetables cultivated in peri-urban areas are exposed to a greater concentration of organic microcontaminants (OMCs) and trace elements (TEs) than those grown in rural areas. In this study, the occurrence and human health risk of chemical contaminants (16 TEs and 33 OMCs) in edible parts of lettuce, tomato, cauliflower, and broad beans from two farm fields in the peri-urban area of the city of Barcelona and one rural site outside the peri-urban area were assessed. The concentration of TEs and OMCs (on fresh weight basis) ranged from non-detectable to 17.4 mg/kg and from non-detectable to 256 µg/kg, respectively. Tomato fruits showed the highest concentration of TEs and OMCs. Principal component analysis indicated that the occurrence of chemical contaminants in vegetables depended on the commodity rather than the location (peri-urban vs rural). Risk assessment using hazardous quotient (HQ) and threshold of toxicological concern (TTC) approaches showed that the risk for the consumption of target vegetables in the peri-urban area was low and similar to that observed for the rural site. Total HQ values for TEs were always below 1, and a minimum consumption of 150 g/day for children and 380 g/day for adults is required to reach the TTC due to the presence of pesticides. Further studies are needed to estimate the combined effect of TEs and OMCs on human health.

A propósito de un caso, linfoma cerebral primario diagnosticado durante estudio de demencias en una paciente inmunocompetente / Presentation of a case of primary cerebral lymphoma diagnosed in an immunocompetent patient during a dementia study

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Occurrence and bioaccumulation of chemical contaminants in lettuce grown in peri-urban horticulture.

Peri-urban horticulture performs environmental and socio-economic functions and provides ecological services to nearby urban areas. Nevertheless, industrialization and water pollution have led to an increase in the exposure of peri-urban vegetables to contaminants such as trace elements (TEs) and organic microcontaminants (OMCs). In this study, the occurrence of chemical contaminants (i.e., 16 TEs, 33 OMCs) in soil and lettuce leaves from 4 farm fields in the peri-urban area of the city of Barcelona was assessed. A rural site, outside the peri-urban area of influence, was selected for comparison. The concentration of TEs and OMCs ranged from non-detectable to 803 mg/kg dw and from non-detectable to 397 µg/kg dw respectively in the peri-urban soil, and from 6 ·â€¯10-5 to 4.91 mg/kg fw and from non-detectable to 193 µg/kg fw respectively in lettuce leaves. Although the concentration of Mo, Ni, Pb, and As in the soil of the peri-urban area exceeded the environmental quality guidelines, their occurrence in lettuce complied with human food standards (except for Pb). The many fungicides (carbendazim, dimetomorph, and methylparaben) and chemicals released by plastic pipelines (tris(1-chloro-2-propyl)phosphate, bisphenol F, and 2-mercaptobenzothiazole) used in agriculture were prevalent in the soil and the edible parts of the lettuce. The occurrence of these chemical pollutants in the peri-urban area did not affect the chlorophyll, lipid, or carbohydrate content of the lettuce leaves. PCA (Principal Component Analysis) showed that soil pollution, fungicide application, and irrigation water quality are the most relevant factors determining the presence of contaminants in crops.

Occurrence of chemical contaminants in peri-urban agricultural irrigation waters and assessment of their phytotoxicity and crop productivity.

Water scarcity and water pollution have increased the pressure on water resources worldwide. This pressure is particularly important in highly populated areas where water demand exceeds the available natural resources. In this regard, water reuse has emerged as an excellent water source alternative for peri-urban agriculture. Nevertheless, it must cope with the occurrence of chemical contaminants, ranging from trace elements (TEs) to organic microcontaminants. In this study, chemical contaminants (i.e., 15 TEs, 34 contaminants of emerging concern (CECs)), bulk parameters, and nutrients from irrigation waters and crop productivity (Lycopersicon esculentum Mill. cv. Bodar and Lactuca sativa L. cv. Batavia) were seasonally surveyed in 4 farm plots in the peri-urban area of the city of Barcelona. A pristine site, where rain-groundwater is used for irrigation, was selected for background concentrations. The average concentration levels of TEs and CECs in the irrigation water impacted by treated wastewater (TWW) were 3 (35±75µgL-1) and 13 (553±1050ngL-1) times higher than at the pristine site respectively. Principal component analysis was used to classify the irrigation waters by chemical composition. To assess the impact of the occurrence of these contaminants on agriculture, a seed germination assay (Lactuca sativa L) and real field-scale study of crop productivity (i.e., lettuce and tomato) were used. Although irrigation waters from the peri-urban area exhibited a higher frequency of detection and concentration of the assessed chemical contaminants than those of the pristine site (P1), no significant differences were found in seed phytotoxicity or crop productivity. In fact, the crops impacted by TWW showed higher productivity than the other farm plots studied, which was associated with the higher nutrient availability for plants.

Effect of soil biochar concentration on the mitigation of emerging organic contaminant uptake in lettuce.

Although crop uptake of emerging organic contaminants (EOC) from irrigation water and soils has been previously reported, successful mitigation strategies have not yet been established. In this study, soil was amended with a wood-based biochar (BC) at two rates (0, 2.5 and 5% w/w) to evaluate the effect on mitigation of EOC uptake (i.e. bisphenol A, caffeine, carbamazepine, clofibric acid, furosemide, ibuprofen, methyl dihydrojasmonate, tris(2-chloroethyl)phosphate, triclosan, and tonalide) in lettuce (Lactuca sativa L.). After 28 days of irrigation with water containing EOCs at 15µgL-1, the average EOC concentration in roots and leaves decreased by 20-76% in biochar amended soil relative to non BC-amended soil. In addition, the enantiomeric fractions (EF) of ibuprofen (IBU) in biochar amended soils (EF=0.58) and unamended soils (EF=0.76) suggest that the IBU sorbed fraction in BC is more recalcitrant to its biodegradation.

Estimate of uptake and translocation of emerging organic contaminants from irrigation water concentration in lettuce grown under controlled conditions.

The widespread distribution of emerging organic contaminants (EOCs) in the water cycle can lead to their incorporation in irrigated crops, posing a potential risk for human consumption. To gain further insight into the processes controlling the uptake of organic microcontaminants, Batavia lettuce (Lactuca sativa) grown under controlled conditions was watered with EOCs (e.g., non-steroidal anti-inflammatories, sulfonamides, ß-blockers, phenolic estrogens, anticonvulsants, stimulants, polycyclic musks, biocides) at different concentrations (0-40µgL(-1)). Linear correlations were obtained between the EOC concentrations in the roots and leaves and the watering concentrations for most of the contaminants investigated. However, large differences were found in the root concentration factors ( [Formula: see text] =0.27-733) and leaf translocation concentration factors ( [Formula: see text] =0-3) depending on the persistence of the target contaminants in the rhizosphere and the specific physicochemical properties of each one. With the obtained dataset, a simple predictive model based on a linear regression and the root bioconcentration and translocation factors can be used to estimate the concentration of the target EOCs in leaves based on the dose supplied in the irrigation water or the soil concentration. Finally, enantiomeric fractionation of racemic ibuprofen from the initial spiking mixture suggests that biodegradation mainly occurs in the rhizosphere.

Uptake of organic emergent contaminants in spath and lettuce: an in vitro experiment.

Although a myriad of organic microcontaminants may occur in irrigation waters, little attention has been paid to their incorporation in crops. In this work, a systematic approach to assess the final fate of both ionizable and neutral organic contaminants taken up by plants is described. In vitro uptake of triclosan (TCS), hydrocinnamic acid (HCA), tonalide (TON), ibuprofen (IBF), naproxen (NPX), and clofibric acid (CFA) were studied in lettuce ( Lactuca sativa L) and spath ( Spathiphyllum spp.) as model plants. After 30 days incubation, analyte depletion from the culture medium was 85-99% (lettuce) and 51-81% (spath). HCA, NPX, and CFA exhibited the highest depletion rate in both plant species. Lettuce plant tissue analysis revealed an accumulation of all compounds except for HCA. These compounds reached a peak in tissue concentration followed by a sudden drop, probably due to the plant detoxification system and analyte depletion from the culture medium. Kinetic characterization of the uptake and detoxification processes was fitted to a pseudo-first-order rate. Compounds with a carboxylic group in their structure exhibited higher uptake rates, possibly due to the contribution of an ion trap effect. Molecular weight and log K(ow) played a direct role in uptake in lettuce, as proven by the significant correlation of both properties to depletion and by the correlation of molecular weight to kinetic uptake rates.