Global taxonomic, functional, and phylogenetic diversity of bees in apple orchards.

An essential prerequisite to safeguard pollinator species is characterisation of the multifaceted diversity of crop pollinators and identification of the drivers of pollinator community changes across biogeographical gradients. The extent to which intensive agriculture is associated with the homogenisation of biological communities at large spatial scales remains poorly understood. In this study, we investigated diversity drivers for 644 bee species/morphospecies in 177 commercial apple orchards across 33 countries and four global biogeographical biomes. Our findings reveal significant taxonomic dissimilarity among biogeographical zones. Interestingly, despite this dissimilarity, species from different zones share similar higher-level phylogenetic groups and similar ecological and behavioural traits (i.e. functional traits), likely due to habitat filtering caused by perennial monoculture systems managed intensively for crop production. Honey bee species dominated orchard communities, while other managed/manageable and wild species were collected in lower numbers. Moreover, the presence of herbaceous, uncultivated open areas and organic management practices were associated with increased wild bee diversity. Overall, our study sheds light on the importance of large-scale analyses contributing to the emerging fields of functional and phylogenetic diversity, which can be related to ecosystem function to promote biodiversity as a key asset in agroecosystems in the face of global change pressures.

Effects of biosolids application on nitrogen dynamics and microbial structure in a saline-sodic soil of the former Lake Texcoco (Mexico).

The saline-sodic soil of the former Lake Texcoco, a large area exposed to desertification, is a unique environment, but little is known about its microbial ecology. The objective of this study was to examine bacterial community structure, activity, and function when biosolids were added to microcosms. The application rates were such that 0, 66, 132, or 265 mg total Nk g(-1) were added with the biosolids (total C and N content 158 and 11.5 g kg(-1) dry biosolids, respectively). Approximately 60% of the biosolids were mineralized within 90 days. Microbial respiration and to a lesser extent ammonification and nitrification, increased after biosolids application. The rRNA intergenic spacer analysis (RISA) patterns for the biosolids and unamended soil bacterial communities were different, indicating that the microorganisms in the biosolids were distinct from the native population. It appears that the survival of the allochthonous microorganisms was short, presumably due to the adverse soil conditions.

O-CAS, a fast and universal method for siderophore detection.

In this work, the popular CAS assay for siderophore detection, based on the utilization of chrome azurol S, was redesigned and optimized to produce a new, fast, non-toxic, and easy method to determine a wide variety of microorganisms capable of siderophore production on a solid medium. Furthermore, this specific bioassay allows for the identification of more than one single siderophore-producing microorganism at the same time, using an overlay technique in which a modified CAS medium is cast upon culture agar plates (thus its name "O-CAS", for overlaid CAS). Detection was optimized through adjustments to the medium's composition and a quantifying strategy. Specificity of the bioassay was tested on microorganisms known for siderophore production. As a result, a total of 48 microorganisms were isolated from three different types of samples (fresh water, salt water, and alkaline soil), of which 36 were determined as siderophore producers. The compounds identified through this method belonged to both hydroxamate and catechol-types, previously reported to cause color change of the CAS medium from blue to orange and purple, respectively. Some isolated microorganisms, however, caused a color change that differed from previous descriptions.

Acclimation of mesophilic anaerobic sludge to thermophilic conditions: PCR genera detection methodology.

In Mexico, sludge from wastewater treatment plants is a public health problem, especially for the infant population due to the presence of pathogens and parasite eggs. Therefore, it is of great interest to apply proper treatment methods for those wastes. An option proposed for the removal of possible infectious sources is thermophilic anaerobic digestion, even though a limitation for its acceptance is the slow start-up of the reactors. The transformation of a mesophilic anaerobic sludge for its utilization as a thermophilic inoculum, by means of direct temperature increase up to 55 degrees C and feeding of the inoculum with synthetic medium was possible in two months. As a main part of the work and with the objective of evaluating the changes in the methanogenic microbial population during the sludge treatment, a specific detection technique for these bacteria has been developed and validated, based on the use of the polymerase chain reaction (PCR).

Effect of aluminium and sulphate on anaerobic digestion of sludge from wastewater enhanced primary treatment.

The combined and individual effects of aluminium and sulphate at concentrations of 1,000 mg/l as Al(OH)3, and 150 mgSO4(2-)/L as K2SO4, respectively, on the anaerobic digestion of sludge from enhanced primary treatment (EPT) were evaluated in 1 L capacity semi continuous reactors. It was found that at 59 days, aluminium inhibits the specific methanogenic activity (SMA) of methanogenic and acetogenic bacteria resulting in a 50% to 72% decrease. Sulphate also inhibits (48% to 65%) the SMA of the same type of bacteria. Methanogenic and acetogenic bacteria were able to adapt, to a different extent, to the assayed concentrations of aluminium and sulphate. However, the combination of aluminium and sulphate resulted in a higher inhibition, especially of the hydrogenophilic methanogenic bacteria. Indeed, this effect remained during the time of the experiment, maintaining an inhibition of 44% at 114 days. Feeding with EPT sludge led to a bigger decrease in SMA of each bacterial group, with respect to the other treatments with time. It is concluded that the acidification of anaerobic reactors fed with EPT sludge is due, among other causes, to the concurrent presence of aluminium and sulphate.

Removal of helminth eggs and fecal coliforms by anaerobic thermophilic sludge digestion.

Anaerobic digestion of two types of waste sludge was applied in order to assess the suitability of thermophilic conditions for the stabilization of organic matter and removal of fecal coliforms and helminth eggs. Feeding sludge was taken from an activated sludge municipal facility (BS) and from an enhanced primary treatment municipal plant (EPT). As an accompanying experiment, mesophilic digesters were also operated. The four digesters (M1, M2, T1, T2) had a 5 litre volume and an egg shape. A highly stabilized material was obtained at both temperatures with BS type of sludge, taking the reduction of volatile fraction of suspended solids (%Rvss) as indicator (84% for M1 and 74% for T1). In general, EPT sludge was a more difficult substrate, if compared with BS sludge; thermophilic condition was better adapted than mesophilic for this kind of sludge. Satisfactory reductions on counts of fecal coliforms and helminth eggs were achieved under thermophilic digestion for both types of feeding sludge. T1 digester, fed with biological sludge, removed fecal coliforms below 1000 MPN/gTS and helminth eggs down to 0.28 HELarval/gTS, at an HRT of 20 days. As a general conclusion, anaerobic thermophilic digestion may be an appropriate option for sludge stabilization, in order to meet EPA Class A biosolids final disposal regulations. However, further research is needed in order to consistently remove helminth eggs and fecal coliforms from waste sludge at shorter hydraulic retention times.

Removal of fecal indicator organisms and parasites (fecal coliforms and helminth eggs) from municipal biologic sludge by anaerobic mesophilic and thermophilic digestion.

In this work, two egg-shaped, 5L-volume, anaerobic sludge digesters were used, one under mesophilic conditions (35 degrees C, M1), and the other under thermophilic conditions (55 degrees C, T1). Both digesters were fed with the purged sludge from an anaerobic treatment plant (start-up period) and from an activated sludge plant (stabilization period), treating municipal wastewaters. The purpose of the study was to establish the technical feasibility of the anaerobic thermophilic sludge treatment comparatively, during the stages of start-up and stabilization of the process, for removing pathogenic microorganisms and parasites efficiently. The results show that, in both stages, the anaerobic thermophilic digester presents higher efficiency on the removal of pathogens and parasites, than the mesophilic digester. Anaerobic thermophilic digestion is close to complying with the EPA (1998) limits for "Class A" type biosolids, referring to the number of parasitic helminth eggs (0.25 HELarval/gTS), and to the pathogen indicator fecal coliforms (< 1000 MPN/gTS). Therefore, the results show that thermophilic anaerobic digestion of biologic sludge may be considered as a suitable technology for the production of Class A biosolids, for further use in agriculture without restrictions.

Comparison of lipid composition in two types of human putrefactive liquid.

The decomposition of a human cadaver was stopped after solidification of putrefactive liquid during a GIS Burial experiment. Knowledge of this phenomenon is necessary to optimize burial conditions and to decrease cemetery congestion. In this preliminary study, we devised a method using thin-layer chromatography and gas chromatography to compare different putrefactive liquids. A comparison of lipid composition among two cadavers revealed a decrease in the decomposition rate of the cadaver that had the gelled putrefactive liquid. Essentially, fatty acids were observed in two types of extracts. The difference was quantitative: there was a higher amount of fatty acids in the gelled sample than in the standard liquid, suggesting a decrease of decomposition rate in the gelled extract. A large quantity of oleate salts may be favourable for solidification. In addition, an isomer of oleic acid (elaidic acid) could be present which may have a determining factor in the phenomenon of gelled putrefaction. A large amount of stearic acid was present in the gelled extract and may be involved in solidification. This method was efficient for comparing the lipid composition of different putrefactive liquids and may be used for a large-scale study. This is the first report concerning methods to determine the lipid composition of human decomposition liquids after 4 years postmortem.

Isolation of a methanogenic bacterium, Methanosarcina sp. strain FR, for its ability to degrade high concentration of perchloroethylene.

Tetrachloroethylene (PCE) is a toxic compound essentially used as a degreasing and dry-cleaning solvent. A methanogenic and sulfate-reducing consortium that dechlorinates and mineralizes high concentrations of PCE was derived from anaerobically digested sludge obtained from a waste water treatment plant (Bourg-en-Bresse, France). A methanogenic bacterium, strain FR, was isolated from this acclimated consortium. On the basis of morphological and physiological characteristics, strain FR was classified in the genus of Methanosarcina. Phylogeny analysis with the 16S rRNA gene sequence revealed that strain FR is highly related to Methanosarcina mazei and Methanosarcina frisia (99.6 and 99.5% identity, respectively). High concentrations (50-87 microM) of PCE were completely dechlorinated by strain FR cultures at the rate of 76 nM-mg protein(-1).day(-1). PCE dechlorination produced a nonidentified compound. The tracer experiments with [13C]PCE revealed that the product was nonchlorinated. Dechlorination of PCE to trichloroethylene was still active in the presence of boiled cell extract of the strain FR. However, no further dechlorination was observed. This result suggests that a cofactor rather than an enzymatic system is responsible for the first dechlorination of PCE. Dechlorination-active fractions purified from cell extracts on a XAD-4 column revealed the presence of F(420), F(430), and cobamides cofactors. This is the first report of the isolation of a methanogenic bacterium with the ability to dechlorinate high concentrations of PCE to a nonchlorinated product.