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1.
Virology ; 322(1): 82-92, 2004 Apr 25.
Article in English | MEDLINE | ID: mdl-15063119

ABSTRACT

Upon infection of its host Escherichia coli, satellite bacteriophage P4 can integrate its genome into the bacterial chromosome by Int-mediated site-specific recombination between the attP and the attB sites. The opposite event, excision, may either occur spontaneously or be induced by a superinfecting P2 helper phage. In this work, we demonstrate that the product of the P4 vis gene, a regulator of the P4 late promoters P(LL) and P(sid), is needed for prophage excision. This conclusion is supported by the following evidence: (i) P4 mutants carrying either a frameshift mutation or a deletion of the vis gene were unable to excise both spontaneously or upon P2 phage superinfection; (ii) expression of the Vis protein from a plasmid induced P4 prophage excision; (iii) excision depended on a functional integrase (Int) protein, thus suggesting that Vis is involved in the formation of the excision complex, rather than in the excision recombination event per se; (iv) Vis protein bound P4 DNA in the attP region at two distinct boxes (Box I and Box II), located between the int gene and the attP core region, and caused bending of the bound DNA. Furthermore, we mapped by primer extension the 5' end of the int transcript and found that ectopic expression of Vis reduced its signal intensity, suggesting that Vis is also involved in negative regulation of the int promoter.


Subject(s)
Coliphages/physiology , DNA-Binding Proteins/physiology , Viral Proteins/physiology , Amino Acid Sequence , Attachment Sites, Microbiological/genetics , Base Sequence , Cloning, Molecular , Consensus Sequence , DNA, Viral/metabolism , DNA-Binding Proteins/biosynthesis , DNA-Binding Proteins/genetics , Integrases/genetics , Molecular Sequence Data , Promoter Regions, Genetic , Viral Proteins/biosynthesis , Viral Proteins/genetics , Virus Activation
2.
Biochim Biophys Acta ; 1624(1-3): 6-10, 2003 Dec 05.
Article in English | MEDLINE | ID: mdl-14642807

ABSTRACT

Two recombinant Escherichia coli strains expressing different levels of an interferon fusion protein as inclusion bodies have been studied by Fourier transform infrared (FT-IR) microspectroscopy. A marker band at 1628 cm(-1) allowed monitoring of the protein expression by direct analysis of cell pellets in a rapid, non-invasive and quantitative way. The results demonstrate that FT-IR microspectroscopy is a technique of potential biotechnological interest for studying inclusion body formation.


Subject(s)
Escherichia coli/genetics , Interferon-alpha/analysis , Recombinant Fusion Proteins/analysis , Escherichia coli/metabolism , Inclusion Bodies/chemistry , Inclusion Bodies/metabolism , Interferon alpha-2 , Interferon-alpha/biosynthesis , Recombinant Fusion Proteins/biosynthesis , Recombinant Proteins , Spectroscopy, Fourier Transform Infrared
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