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1.
NPJ Digit Med ; 3: 127, 2020.
Article in English | MEDLINE | ID: mdl-33083562

ABSTRACT

Technological advances in multimodal wearable and connected devices have enabled the measurement of human movement and physiology in naturalistic settings. The ability to collect continuous activity monitoring data with digital devices in real-world environments has opened unprecedented opportunity to establish clinical digital phenotypes across diseases. Many traditional assessments of physical function utilized in clinical trials are limited because they are episodic, therefore, cannot capture the day-to-day temporal fluctuations and longitudinal changes in activity that individuals experience. In order to understand the sensitivity of gait speed as a potential endpoint for clinical trials, we investigated the use of digital devices during traditional clinical assessments and in real-world environments in a group of healthy younger (n = 33, 18-40 years) and older (n = 32, 65-85 years) adults. We observed good agreement between gait speed estimated using a lumbar-mounted accelerometer and gold standard system during the performance of traditional gait assessment task in-lab, and saw discrepancies between in-lab and at-home gait speed. We found that gait speed estimated in-lab, with or without digital devices, failed to differentiate between the age groups, whereas gait speed derived during at-home monitoring was able to distinguish the age groups. Furthermore, we found that only three days of at-home monitoring was sufficient to reliably estimate gait speed in our population, and still capture age-related group differences. Our results suggest that gait speed derived from activities during daily life using data from wearable devices may have the potential to transform clinical trials by non-invasively and unobtrusively providing a more objective and naturalistic measure of functional ability.

2.
Mol Cell ; 78(3): 477-492.e8, 2020 05 07.
Article in English | MEDLINE | ID: mdl-32386542

ABSTRACT

Myelofibrosis is a severe myeloproliferative neoplasm characterized by increased numbers of abnormal bone marrow megakaryocytes that induce fibrosis, destroying the hematopoietic microenvironment. To determine the cellular and molecular basis for aberrant megakaryopoiesis in myelofibrosis, we performed single-cell transcriptome profiling of 135,929 CD34+ lineage- hematopoietic stem and progenitor cells (HSPCs), single-cell proteomics, genomics, and functional assays. We identified a bias toward megakaryocyte differentiation apparent from early multipotent stem cells in myelofibrosis and associated aberrant molecular signatures. A sub-fraction of myelofibrosis megakaryocyte progenitors (MkPs) are transcriptionally similar to healthy-donor MkPs, but the majority are disease specific, with distinct populations expressing fibrosis- and proliferation-associated genes. Mutant-clone HSPCs have increased expression of megakaryocyte-associated genes compared to wild-type HSPCs, and we provide early validation of G6B as a potential immunotherapy target. Our study paves the way for selective targeting of the myelofibrosis clone and illustrates the power of single-cell multi-omics to discover tumor-specific therapeutic targets and mediators of tissue fibrosis.


Subject(s)
Hematopoiesis/physiology , Megakaryocytes/pathology , Primary Myelofibrosis/blood , Aged , Aged, 80 and over , Cell Differentiation , Female , Gene Expression Regulation , Hematopoiesis/genetics , Hematopoietic Stem Cells/pathology , High-Throughput Nucleotide Sequencing , Humans , Male , Megakaryocytes/physiology , Middle Aged , Mutation , Receptors, Immunologic/genetics , Single-Cell Analysis/methods
3.
Cell Rep ; 24(4): 973-986.e8, 2018 07 24.
Article in English | MEDLINE | ID: mdl-30044992

ABSTRACT

Endosomal sorting complex required for transport (ESCRT) complex proteins regulate biogenesis and release of extracellular vesicles (EVs), which enable cell-to-cell communication in the nervous system essential for development and adult function. We recently showed human loss-of-function (LOF) mutations in ESCRT-III member CHMP1A cause autosomal recessive microcephaly with pontocerebellar hypoplasia, but its mechanism was unclear. Here, we show Chmp1a is required for progenitor proliferation in mouse cortex and cerebellum and progenitor maintenance in human cerebral organoids. In Chmp1a null mice, this defect is associated with impaired sonic hedgehog (Shh) secretion and intraluminal vesicle (ILV) formation in multivesicular bodies (MVBs). Furthermore, we show CHMP1A is important for release of an EV subtype that contains AXL, RAB18, and TMED10 (ART) and SHH. Our findings show CHMP1A loss impairs secretion of SHH on ART-EVs, providing molecular mechanistic insights into the role of ESCRT proteins and EVs in the brain.


Subject(s)
Endosomal Sorting Complexes Required for Transport/metabolism , Extracellular Vesicles/metabolism , Hedgehog Proteins/metabolism , Adult , Animals , Brain/embryology , Brain/metabolism , Choroid Plexus/embryology , Choroid Plexus/growth & development , Choroid Plexus/metabolism , Humans , Infant, Newborn , Mice , NIH 3T3 Cells , Vesicular Transport Proteins
4.
Blood ; 132(13): 1399-1412, 2018 09 27.
Article in English | MEDLINE | ID: mdl-29898956

ABSTRACT

Unlike primary myelofibrosis (PMF) in adults, myelofibrosis in children is rare. Congenital (inherited) forms of myelofibrosis (cMF) have been described, but the underlying genetic mechanisms remain elusive. Here we describe 4 families with autosomal recessive inherited macrothrombocytopenia with focal myelofibrosis due to germ line loss-of-function mutations in the megakaryocyte-specific immunoreceptor tyrosine-based inhibitory motif (ITIM)-containing receptor G6b-B (G6b, C6orf25, or MPIG6B). Patients presented with a mild-to-moderate bleeding diathesis, macrothrombocytopenia, anemia, leukocytosis and atypical megakaryocytes associated with a distinctive, focal, perimegakaryocytic pattern of bone marrow fibrosis. In addition to identifying the responsible gene, the description of G6b-B as the mutated protein potentially implicates aberrant G6b-B megakaryocytic signaling and activation in the pathogenesis of myelofibrosis. Targeted insertion of human G6b in mice rescued the knockout phenotype and a copy number effect of human G6b-B expression was observed. Homozygous knockin mice expressed 25% of human G6b-B and exhibited a marginal reduction in platelet count and mild alterations in platelet function; these phenotypes were more severe in heterozygous mice that expressed only 12% of human G6b-B. This study establishes G6b-B as a critical regulator of platelet homeostasis in humans and mice. In addition, the humanized G6b mouse will provide an invaluable tool for further investigating the physiological functions of human G6b-B as well as testing the efficacy of drugs targeting this receptor.


Subject(s)
Loss of Function Mutation , Primary Myelofibrosis/congenital , Receptors, Immunologic/genetics , Thrombocytopenia/congenital , Adolescent , Adult , Animals , Blood Platelets/metabolism , Blood Platelets/pathology , Child , Child, Preschool , Female , Gene Knock-In Techniques , Humans , Infant , Male , Megakaryocytes/metabolism , Megakaryocytes/pathology , Mice , Mice, Inbred C57BL , Mice, Knockout , Pedigree , Primary Myelofibrosis/genetics , Primary Myelofibrosis/pathology , Thrombocytopenia/genetics , Thrombocytopenia/pathology , Young Adult
5.
Am J Pathol ; 188(6): 1334-1344, 2018 06.
Article in English | MEDLINE | ID: mdl-29545198

ABSTRACT

Choroid plexus tumors and ciliary body medulloepithelioma are predominantly pediatric neoplasms. Progress in understanding the pathogenesis of these tumors has been hindered by their rarity and lack of models that faithfully recapitulate the disease. Here, we find that endogenous Myc proto-oncogene protein is down-regulated in the forebrain neuroepithelium, whose neural plate border domains give rise to the anterior choroid plexus and ciliary body. To uncover the consequences of persistent Myc expression, MYC expression was forced in multipotent neural precursors (nestin-Cre:Myc), which produced fully penetrant models of choroid plexus carcinoma and ciliary body medulloepithelioma. Nestin-mediated MYC expression in the epithelial cells of choroid plexus leads to the regionalized formation of choroid plexus carcinoma in the posterior domain of the lateral ventricle choroid plexus and the fourth ventricle choroid plexus that is accompanied by loss of multiple cilia, up-regulation of protein biosynthetic machinery, and hydrocephalus. Parallel MYC expression in the ciliary body leads also to up-regulation of protein biosynthetic machinery. Additionally, Myc expression in human choroid plexus tumors increases with aggressiveness of disease. Collectively, our findings expose a select vulnerability of the neuroepithelial lineage to postnatal tumorigenesis and provide a new mouse model for investigating the pathogenesis of these rare pediatric neoplasms.


Subject(s)
Carcinogenesis/pathology , Choroid Plexus Neoplasms/pathology , Ciliary Body/pathology , Disease Models, Animal , Neurons/metabolism , Proto-Oncogene Proteins c-myc/metabolism , Adolescent , Adult , Animals , Carcinogenesis/genetics , Carcinogenesis/metabolism , Child , Child, Preschool , Choroid Plexus Neoplasms/genetics , Choroid Plexus Neoplasms/metabolism , Ciliary Body/metabolism , Female , Humans , Infant , Male , Mice , Mice, Inbred C57BL , Mice, Transgenic , Neurons/pathology , Proto-Oncogene Mas , Proto-Oncogene Proteins c-myc/genetics , Young Adult
6.
Mod Pathol ; 31(3): 463-473, 2018 03.
Article in English | MEDLINE | ID: mdl-29099503

ABSTRACT

Infantile fibrosarcoma and congenital mesoblastic nephroma are tumors of infancy traditionally associated with the ETV6-NTRK3 gene fusion. However, a number of case reports have identified variant fusions in these tumors. In order to assess the frequency of variant NTRK3 fusions, and in particular whether the recently identified EML4-NTRK3 fusion is recurrent, 63 archival cases of infantile fibrosarcoma, congenital mesoblastic nephroma, mammary analog secretory carcinoma and secretory breast carcinoma (tumor types that are known to carry recurrent ETV6-NTRK3 fusions) were tested with NTRK3 break-apart FISH, EML4-NTRK3 dual fusion FISH, and targeted RNA sequencing. The EML4-NTRK3 fusion was identified in two cases of infantile fibrosarcoma (one of which was previously described), and in one case of congenital mesoblastic nephroma, demonstrating that the EML4-NTRK3 fusion is a recurrent genetic event in these related tumors. The growing spectrum of gene fusions associated with infantile fibrosarcoma and congenital mesoblastic nephroma along with the recent availability of targeted therapies directed toward inhibition of NTRK signaling argue for alternate testing strategies beyond ETV6 break-apart FISH. The use of either NTRK3 FISH or next-generation sequencing will expand the number of cases in which an oncogenic fusion is identified and facilitate optimal diagnosis and treatment for patients.


Subject(s)
Cell Cycle Proteins/genetics , Discoidin Domain Receptor 2/genetics , Fibrosarcoma/diagnosis , Kidney Neoplasms/diagnosis , Microtubule-Associated Proteins/genetics , Neoplasm Recurrence, Local/genetics , Nephroma, Mesoblastic/diagnosis , Oncogene Proteins, Fusion/genetics , Serine Endopeptidases/genetics , Adolescent , Adult , Aged , Aged, 80 and over , Breast Neoplasms/genetics , Carcinoma/genetics , Child, Preschool , Female , Fibrosarcoma/genetics , Genetic Testing , Humans , In Situ Hybridization, Fluorescence , Infant , Infant, Newborn , Kidney Neoplasms/congenital , Kidney Neoplasms/genetics , Male , Middle Aged , Nephroma, Mesoblastic/congenital , Nephroma, Mesoblastic/genetics , Proto-Oncogene Proteins c-ets/genetics , Repressor Proteins/genetics , Sequence Analysis, RNA , ETS Translocation Variant 6 Protein
7.
Nat Cell Biol ; 18(4): 418-30, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26999738

ABSTRACT

Aberrant Notch signalling has been linked to many cancers including choroid plexus (CP) tumours, a group of rare and predominantly paediatric brain neoplasms. We developed animal models of CP tumours, by inducing sustained expression of Notch1, that recapitulate properties of human CP tumours with aberrant NOTCH signalling. Whole-transcriptome and functional analyses showed that tumour cell proliferation is associated with Sonic Hedgehog (Shh) in the tumour microenvironment. Unlike CP epithelial cells, which have multiple primary cilia, tumour cells possess a solitary primary cilium as a result of Notch-mediated suppression of multiciliate differentiation. A Shh-driven signalling cascade in the primary cilium occurs in tumour cells but not in epithelial cells. Lineage studies show that CP tumours arise from monociliated progenitors in the roof plate characterized by elevated Notch signalling. Abnormal SHH signalling and distinct ciliogenesis are detected in human CP tumours, suggesting the SHH pathway and cilia differentiation as potential therapeutic avenues.


Subject(s)
Cell Proliferation/genetics , Choroid Plexus Neoplasms/genetics , Hedgehog Proteins/genetics , Receptor, Notch1/genetics , Animals , Blotting, Western , Choroid Plexus/metabolism , Choroid Plexus/pathology , Choroid Plexus/ultrastructure , Choroid Plexus Neoplasms/metabolism , Choroid Plexus Neoplasms/pathology , Cilia/metabolism , Cilia/ultrastructure , Female , Gene Expression Profiling , Gene Expression Regulation, Neoplastic , Hedgehog Proteins/metabolism , Humans , Male , Mice, 129 Strain , Mice, Inbred C57BL , Mice, Transgenic , Microscopy, Confocal , Microscopy, Electron, Transmission , Oligonucleotide Array Sequence Analysis , Receptor, Notch1/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Signal Transduction/genetics , Tumor Cells, Cultured , Tumor Microenvironment/genetics
8.
J Neurosci ; 35(12): 4903-16, 2015 Mar 25.
Article in English | MEDLINE | ID: mdl-25810521

ABSTRACT

A sheet of choroid plexus epithelial cells extends into each cerebral ventricle and secretes signaling factors into the CSF. To evaluate whether differences in the CSF proteome across ventricles arise, in part, from regional differences in choroid plexus gene expression, we defined the transcriptome of lateral ventricle (telencephalic) versus fourth ventricle (hindbrain) choroid plexus. We find that positional identities of mouse, macaque, and human choroid plexi derive from gene expression domains that parallel their axial tissues of origin. We then show that molecular heterogeneity between telencephalic and hindbrain choroid plexi contributes to region-specific, age-dependent protein secretion in vitro. Transcriptome analysis of FACS-purified choroid plexus epithelial cells also predicts their cell-type-specific secretome. Spatial domains with distinct protein expression profiles were observed within each choroid plexus. We propose that regional differences between choroid plexi contribute to dynamic signaling gradients across the mammalian cerebroventricular system.


Subject(s)
Cerebrospinal Fluid/metabolism , Choroid Plexus/metabolism , Fourth Ventricle/metabolism , Lateral Ventricles/metabolism , Transcriptome , Aging/metabolism , Animals , Epithelial Cells/metabolism , Female , Humans , Macaca mulatta , Male , Mice
9.
Histopathology ; 67(3): 306-12, 2015 Sep.
Article in English | MEDLINE | ID: mdl-25556515

ABSTRACT

AIMS: Distinguishing clear cell sarcoma of the kidney (CCSK) from other paediatric malignancies, particularly blastema-rich Wilms tumour (WT) and congenital mesoblastic nephroma (CMN), is challenging. Specific immunohistochemistry for CCSK does not exist, and diagnosis rests upon histopa thology. Recently, the YWHAE-FAM22 rearrange ment, identical to that in endometrial stromal sarcoma (ESS), has been identified in CCSKs. As this fusion results in overexpression of cyclin D1 in ESS, we postulated that overexpression would also occur in CCSK; cyclin D1 immunohistochemistry could then be used to differentiate CCSK from other tumours. The goal of this study was therefore to evaluate the utility of cyclin D1 immunohistochemistry in identifying CCSK and helping to differentiate it from its mimics. METHODS AND RESULTS: Cyclin D1 expression was evaluated in 59 renal tumours-CCSK (14), WT (25), rhabdoid tumour (four), Ewing sarcoma (five), and CMN (11)-and four neuroblastomas. All 14 CCSKs showed diffuse and strong reactivity. In contrast, the blastematous component of most WTs showed only rare positive nuclei, that of rhabdoid tumours showed rare to focal immunoreactivity, and that of more than half of CMNs showed weak or focal immunoreactivity. Most Ewing sarcomas and all neuroblastomas showed diffuse moderate to strong staining. CONCLUSIONS: Cyclin D1 is most helpful in distinguishing CCSK from WT, rhabdoid tumour, and some CMNs, but not from neuroblastoma or Ewing sarcomas.


Subject(s)
Cyclin D1/metabolism , Kidney Neoplasms/metabolism , Kidney Neoplasms/pathology , Sarcoma, Clear Cell/metabolism , Sarcoma, Clear Cell/pathology , Biomarkers, Tumor/metabolism , Child, Preschool , Diagnosis, Differential , Female , Humans , Immunohistochemistry , Kidney Neoplasms/diagnosis , Male , Nephroma, Mesoblastic/diagnosis , Nephroma, Mesoblastic/metabolism , Neuroblastoma/diagnosis , Neuroblastoma/metabolism , Rhabdoid Tumor/diagnosis , Rhabdoid Tumor/metabolism , Sarcoma, Clear Cell/diagnosis , Sarcoma, Ewing/diagnosis , Sarcoma, Ewing/metabolism , Wilms Tumor/diagnosis , Wilms Tumor/metabolism
10.
Am J Surg Pathol ; 39(2): 245-50, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25517957

ABSTRACT

Microvillus inclusion disease (MVID) is a rare congenital disorder that manifests early in infancy as intractable watery diarrhea. The entity is characterized morphologically by a deficient brush border and apical cytoplasmic inclusions within absorptive cells (enterocytes) due to misplaced assembly of brush border proteins. The diagnosis is based upon histopathology, special stains, immunohistochemistry (IHC), and ultimately upon electron microscopy. Currently, the periodic acid-Schiff stain (PAS) and CD10 IHC are commonly used as adjuncts, but in addition to brush border structures, they stain a variety of apical cytoplasmic inclusions and organelles, thereby interfering with recognition of microvillus inclusions. Villin is a protein that specifically binds to the actin core bundle of microvilli. We utilized villin IHC in formalin-fixed paraffin-embedded gastrointestinal biopsies from 6 patients with MVID, 5 with celiac disease, and 17 children with normal intestinal biopsies and compared the results with those obtained with CD10 IHC and PAS staining. All MVID cases had confirmatory electron microscopy at the time of diagnosis. Villin immunoreactivity was restricted to the brush border in the control groups. In MVID, villin IHC showed attenuation or loss of the surface brush border and also highlighted the cytoplasmic microvillus inclusions with clarity. In MVID, CD10 IHC and the PAS stain also showed attenuation or loss of the surface brush border, but staining of a variety of cytoplasmic structures largely obscured the microvillus inclusions. In sum, villin IHC is a reliable and superior adjunct in the diagnosis of MVID. Study of additional cases will determine whether villin IHC would obviate the need for electron microscopic confirmation.


Subject(s)
Immunohistochemistry/methods , Malabsorption Syndromes/diagnosis , Microfilament Proteins/biosynthesis , Microvilli/pathology , Mucolipidoses/diagnosis , Biomarkers/analysis , Child , Child, Preschool , Female , Humans , Infant , Male , Microfilament Proteins/analysis , Retrospective Studies
11.
Cancer Discov ; 4(11): 1326-41, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25186949

ABSTRACT

UNLABELLED: Pediatric Ewing sarcoma is characterized by the expression of chimeric fusions of EWS and ETS family transcription factors, representing a paradigm for studying cancers driven by transcription factor rearrangements. In this study, we describe the somatic landscape of pediatric Ewing sarcoma. These tumors are among the most genetically normal cancers characterized to date, with only EWS-ETS rearrangements identified in the majority of tumors. STAG2 loss, however, is present in more than 15% of Ewing sarcoma tumors; occurs by point mutation, rearrangement, and likely nongenetic mechanisms; and is associated with disease dissemination. Perhaps the most striking finding is the paucity of mutations in immediately targetable signal transduction pathways, highlighting the need for new therapeutic approaches to target EWS-ETS fusions in this disease. SIGNIFICANCE: We performed next-generation sequencing of Ewing sarcoma, a pediatric cancer involving bone, characterized by expression of EWS-ETS fusions. We found remarkably few mutations. However, we discovered that loss of STAG2 expression occurs in 15% of tumors and is associated with metastatic disease, suggesting a potential genetic vulnerability in Ewing sarcoma.


Subject(s)
Antigens, Nuclear/genetics , Bone Neoplasms/genetics , Sarcoma, Ewing/genetics , Antigens, Nuclear/metabolism , Bone Neoplasms/metabolism , Cell Cycle Proteins , Cell Line, Tumor , Child , DNA, Neoplasm/genetics , Female , Gene Rearrangement , Genomics , Humans , Male , Mutation , Sarcoma, Ewing/metabolism , Sequence Analysis, DNA
12.
Nat Genet ; 46(2): 161-5, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24413733

ABSTRACT

Craniopharyngiomas are epithelial tumors that typically arise in the suprasellar region of the brain. Patients experience substantial clinical sequelae from both extension of the tumors and therapeutic interventions that damage the optic chiasm, the pituitary stalk and the hypothalamic area. Using whole-exome sequencing, we identified mutations in CTNNB1 (ß-catenin) in nearly all adamantinomatous craniopharyngiomas examined (11/12, 92%) and recurrent mutations in BRAF (resulting in p.Val600Glu) in all papillary craniopharyngiomas (3/3, 100%). Targeted genotyping revealed BRAF p.Val600Glu in 95% of papillary craniopharyngiomas (36 of 39 tumors) and mutation of CTNNB1 in 96% of adamantinomatous craniopharyngiomas (51 of 53 tumors). The CTNNB1 and BRAF mutations were clonal in each tumor subtype, and we detected no other recurrent mutations or genomic aberrations in either subtype. Adamantinomatous and papillary craniopharyngiomas harbor mutations that are mutually exclusive and clonal. These findings have important implications for the diagnosis and treatment of these neoplasms.


Subject(s)
Craniopharyngioma/genetics , Exome/genetics , Pituitary Neoplasms/genetics , Proto-Oncogene Proteins B-raf/genetics , Base Sequence , Bayes Theorem , High-Throughput Nucleotide Sequencing , Humans , Immunohistochemistry , Molecular Sequence Data , Mutation, Missense/genetics , Sequence Analysis, DNA , beta Catenin/genetics , beta Catenin/metabolism
13.
Clin Cancer Res ; 20(3): 678-87, 2014 Feb 01.
Article in English | MEDLINE | ID: mdl-24218512

ABSTRACT

PURPOSE: Ewing sarcoma is a tumor of the bone and soft tissue characterized by diffuse cell membrane expression of CD99 (MIC2). Single-site, surgically resectable disease is associated with an excellent 5-year event-free survival; conversely, patients with distant metastases have a poor prognosis. Noninvasive imaging is the standard approach to identifying sites of metastatic disease. We sought to develop a CD99-targeted imaging agent for staging Ewing sarcoma and other CD99-expressing tumors. EXPERIMENTAL DESIGN: We identified a CD99 antibody with highly specific binding in vitro and labeled this antibody with (64)Cu. Mice with either subcutaneous Ewing sarcoma xenograft tumors or micrometastases were imaged with the (64)Cu-labeled anti-CD99 antibody and these results were compared with conventional MRI and 2[18F]fluoro-2-deoxy-D-glucose-positron emission tomography (FDG-PET) imaging. RESULTS: (64)Cu-labeled anti-CD99 antibody demonstrated high avidity for the CD99-positive subcutaneous tumors, with a high tumor-to-background ratio, greater than that demonstrated with FDG-PET. Micrometastases, measuring 1 to 2 mm on MRI, were not detected with FDG-PET but were readily visualized with the (64)Cu-labeled anti-CD99 antibody. Probe biodistribution studies demonstrated high specificity of the probe for CD99-positive tumors. CONCLUSIONS: (64)Cu-labeled anti-CD99 antibody can detect subcutaneous Ewing sarcoma tumors and metastatic sites with high sensitivity, outperforming FDG-PET in preclinical studies. This targeted radiotracer may have important implications for the diagnosis, surveillance, and treatment of Ewing sarcoma. Similarly, it may impact the management of other CD99 positive tumors.


Subject(s)
Antigens, CD/analysis , Bone Neoplasms/diagnostic imaging , Cell Adhesion Molecules/analysis , Copper Radioisotopes , Neoplasm Metastasis/diagnosis , Radiopharmaceuticals , Sarcoma, Ewing/diagnostic imaging , 12E7 Antigen , Animals , Antibodies , Antibody Specificity , Biomarkers, Tumor/analysis , Bone Neoplasms/pathology , Cell Line, Tumor , Disease Models, Animal , Flow Cytometry , Heterografts , Humans , Mice , Mice, Inbred NOD , Mice, SCID , Neoplasm Staging/methods , Positron-Emission Tomography , Sarcoma, Ewing/pathology
14.
Cancer Res ; 73(9): 2873-83, 2013 May 01.
Article in English | MEDLINE | ID: mdl-23536552

ABSTRACT

Limited progress has been made in the treatment of advanced-stage pediatric solid tumors despite the accelerated pace of cancer discovery over the last decade. Tyrosine kinase inhibition is one tractable therapeutic modality for treating human malignancy. However, little is known about the kinases critical to the development or maintenance of many pediatric solid tumors such as Ewing sarcoma. Using a fluorescent, bead-based technology to profile activated tyrosine kinases, we identified focal adhesion kinase (FAK, PTK2) as a candidate target in Ewing sarcoma. FAK is a tyrosine kinase critical for cellular adhesion, growth, and survival. As such, it is a compelling target for cancer-based therapy. In this study, we have shown that FAK is highly phosphorylated in primary Ewing sarcoma tumor samples and that downregulation of FAK by short hairpin RNA and treatment with a FAK-selective kinase inhibitor, PF-562271, impaired growth and colony formation in Ewing sarcoma cell lines. Moreover, treatment of Ewing sarcoma cell lines with PF-562271 induced apoptosis and led to downregulation of AKT/mTOR and CAS activity. Finally, we showed that small-molecule inhibition of FAK attenuated Ewing sarcoma tumor growth in vivo. With FAK inhibitors currently in early-phase clinical trials for adult malignancies, these findings may bear immediate relevance to patients with Ewing sarcoma.


Subject(s)
Focal Adhesion Protein-Tyrosine Kinases/metabolism , Gene Expression Regulation, Neoplastic , Protein-Tyrosine Kinases/metabolism , Sarcoma, Ewing/drug therapy , Sarcoma, Ewing/metabolism , Adult , Animals , Apoptosis , Cell Line, Tumor , Cell Survival , Child , Down-Regulation , Female , Flow Cytometry/methods , HEK293 Cells , Humans , Immunohistochemistry/methods , Lentivirus/genetics , Mice , Mice, Nude , Phosphorylation , Treatment Outcome
15.
Cell Metab ; 17(2): 261-70, 2013 Feb 05.
Article in English | MEDLINE | ID: mdl-23395172

ABSTRACT

Adult humans have about 25 trillion red blood cells (RBCs), and each second we recycle about 5 million RBCs by erythrophagocytosis (EP) in macrophages of the reticuloendothelial system. Despite the central role for EP in mammalian iron metabolism, the molecules and pathways responsible for heme trafficking during EP remain unknown. Here, we show that the mammalian homolog of HRG1, a transmembrane heme permease in C. elegans, is essential for macrophage iron homeostasis and transports heme from the phagolysosome to the cytoplasm during EP. HRG1 is strongly expressed in macrophages of the reticuloendothelial system and specifically localizes to the phagolysosomal membranes during EP. Depletion of Hrg1 in mouse macrophages causes attenuation of heme transport from the phagolysosomal compartment. Importantly, missense polymorphisms in human HRG1 are defective in heme transport. Our results reveal HRG1 as the long-sought heme transporter for heme-iron recycling in macrophages and suggest that genetic variations in HRG1 could be modifiers of human iron metabolism.


Subject(s)
Erythrocytes/cytology , Heme/metabolism , Hemeproteins/metabolism , Macrophages/metabolism , Phagocytosis , Phagosomes/metabolism , Animals , Biological Transport , Erythrocytes/metabolism , Genes, Reporter , HEK293 Cells , Hemolysis , Humans , Intracellular Membranes/metabolism , Iron/metabolism , Macrophages/cytology , Mice , Mononuclear Phagocyte System/cytology , Mutation, Missense/genetics , Polymorphism, Single Nucleotide/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism , Zebrafish
16.
Mod Pathol ; 26(2): 247-55, 2013 Feb.
Article in English | MEDLINE | ID: mdl-22955520

ABSTRACT

Pyogenic granuloma, also called lobular capillary hemangioma, is a condition usually occurring in skin or mucosa and often related to prior local trauma or pregnancy. However, the etiopathogenesis of pyogenic granuloma is poorly understood and whether pyogenic granuloma being a reactive process or a tumor is unknown. In an attempt to clarify this issue, we performed genome-wide transcriptional profiling of laser-captured vessels from pyogenic granuloma and from a richly vascularized tissue, placenta, as well as, from proliferative and involutive hemangiomas. Our study identified a gene signature specific to pyogenic granuloma. In the serial analysis of gene expression (SAGE) database, this signature was linked to 'white blood cells monocytes'. It also demonstrated high enrichment for gene ontology terms corresponding to 'vasculature development' and 'regulation of blood pressure'. This signature included genes of the nitric oxide pathway alongside genes related to hypoxia-induced angiogenesis and vascular injury, three conditions biologically interconnected. Finally, one of the genes specifically associated with pyogenic granuloma was FLT4, a tyrosine-kinase receptor related to pathological angiogenesis. All together, these data advocate for pyogenic granuloma to be a reactive lesion resulting from tissue injury, followed by an impaired wound healing response, during which vascular growth is driven by FLT4 and the nitric oxide pathway.


Subject(s)
Granuloma, Pyogenic/genetics , Neovascularization, Pathologic/genetics , Nitric Oxide/metabolism , Signal Transduction/physiology , Vascular Diseases/genetics , Vascular Endothelial Growth Factor Receptor-3/genetics , Capillaries/metabolism , Capillaries/pathology , Female , Gene Expression , Granuloma, Pyogenic/metabolism , Granuloma, Pyogenic/pathology , Humans , Neovascularization, Pathologic/metabolism , Neovascularization, Pathologic/pathology , Placenta/metabolism , Placenta/pathology , Pregnancy , Vascular Diseases/metabolism , Vascular Diseases/pathology , Vascular Endothelial Growth Factor Receptor-3/metabolism , Wound Healing
17.
Am J Surg Pathol ; 36(8): 1165-9, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22790857

ABSTRACT

Tumor-specific immunohistochemical markers are valuable in the differential diagnosis of malignant small round cell tumors (MSRCTs). The cone-rod homeobox-containing gene (CRX) is a transcription factor that is preferentially expressed in retinal photoreceptor cells. It has been shown that the CRX antibody is a good immunohistochemical marker to differentiate retinoblastoma from other intracranial MSRCTs. Outside of the central nervous system, however, the usefulness of CRX immunohistochemistry in establishing a diagnosis of metastatic retinoblastoma is uncertain, as the expression of CRX in primitive neuroectodermal tumor/Ewing sarcoma (PNET/ES), neuroblastoma, and other MSRCTs is unknown. Archival specimens from resections, core biopsies, and bone marrow biopsies of 41 neuroblastomas, 24 PNET/ES, 19 embryonal rhabdomyosarcomas, 17 alveolar rhabdomyosarcomas, 17 Wilms tumors, 14 desmoplastic small round cell tumors, 20 medulloblastomas, 9 pineal tumors, 17 melanocytic tumors (compound and Spitz nevi), and 8 retinoblastomas were immunostained for CRX. All retinoblastomas had strong diffuse nuclear immunoreactivity for CRX; 8 of the 20 medulloblastomas showed strong nuclear immunoreactivity either in occasional clusters of tumor cells or in rare single scattered tumor cells; 3 of the 9 pineal tumors showed strong nuclear immunoreactivity in approximately 40% to 50% of the tumor cells. Neuroblastomas, PNET/ES, embryonal rhabdomyosarcomas, alveolar rhabdomyosarcomas, Wilms tumors, desmoplastic small round cell tumors, and melanocytic tumors were all negative. Scant nonspecific cytoplasmic staining was observed in some tumors, mostly PNET/ES. These findings suggest that CRX is a useful marker to discriminate metastatic retinoblastoma from other, more common, MSRCTs of childhood.


Subject(s)
Biomarkers, Tumor/analysis , Homeodomain Proteins/analysis , Neoplasm Metastasis/diagnosis , Neoplasms/diagnosis , Trans-Activators/analysis , Desmoplastic Small Round Cell Tumor/diagnosis , Desmoplastic Small Round Cell Tumor/metabolism , Diagnosis, Differential , Homeodomain Proteins/biosynthesis , Humans , Immunohistochemistry , Neoplasms/metabolism , Neuroblastoma/diagnosis , Neuroblastoma/metabolism , Neuroectodermal Tumors, Primitive/diagnosis , Neuroectodermal Tumors, Primitive/metabolism , Retinal Neoplasms/diagnosis , Retinoblastoma/diagnosis , Retinoblastoma/secondary , Rhabdomyosarcoma/diagnosis , Rhabdomyosarcoma/metabolism , Trans-Activators/biosynthesis , Wilms Tumor
18.
Neuron ; 68(1): 45-60, 2010 Oct 06.
Article in English | MEDLINE | ID: mdl-20920790

ABSTRACT

The molecular pathways controlling cerebellar Purkinje cell dendrite formation and maturation are poorly understood. The Purkinje cell degeneration (pcd) mutant mouse is characterized by mutations in Nna1, a gene discovered in an axonal regenerative context, but whose actual function in development and disease is unknown. We found abnormal development of Purkinje cell dendrites in postnatal pcd(Sid) mice and linked this deficit to a deletion mutation in exon 7 of Nna1. With single cell gene profiling and virus-based gene transfer, we analyzed a molecular pathway downstream to Nna1 underlying abnormal Purkinje cell dendritogenesis in pcd(Sid) mice. We discovered that mutant Nna1 dramatically increases intranuclear localization of lysyl oxidase propeptide, which interferes with NF-κB RelA signaling and microtubule-associated protein regulation of microtubule stability, leading to underdevelopment of Purkinje cell dendrites. These findings provide insight into Nna1's role in neuronal development and why its absence renders Purkinje cells more vulnerable.


Subject(s)
Dendrites/physiology , GTP-Binding Proteins/metabolism , NF-kappa B/metabolism , Protein-Lysine 6-Oxidase/metabolism , Purkinje Cells/cytology , Serine-Type D-Ala-D-Ala Carboxypeptidase/metabolism , Signal Transduction/physiology , Animals , Animals, Newborn , Behavior, Animal , Cells, Cultured , Cerebellum/cytology , Cerebellum/pathology , Dendrites/pathology , Disease Models, Animal , Exons/genetics , GTP-Binding Proteins/genetics , Gene Expression Profiling , Gene Expression Regulation/genetics , Mice , Mice, Inbred C57BL , Mice, Transgenic , Motor Activity/genetics , Mutation/genetics , Nerve Degeneration/genetics , Nerve Degeneration/pathology , Nerve Degeneration/physiopathology , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Oligonucleotide Array Sequence Analysis/methods , Organ Culture Techniques , Phosphopyruvate Hydratase/metabolism , Protein-Lysine 6-Oxidase/genetics , Psychomotor Performance/physiology , Purkinje Cells/pathology , RNA Interference/physiology , Serine-Type D-Ala-D-Ala Carboxypeptidase/genetics , Time Factors , Transduction, Genetic/methods
19.
Pediatr Blood Cancer ; 55(3): 546-9, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20658628

ABSTRACT

Shwachman-Diamond syndrome (SDS) is an inherited bone marrow failure syndrome caused by biallelic SBDS gene mutations. Here we examined SBDS protein levels in human bone marrow. SBDS protein expression was high in neutrophil progenitors, megakaryocytes, plasma cells, and osteoblasts. In contrast, SBDS protein levels were low in all hematopoietic cell lineages from patients harboring the common SBDS mutations. We conclude that SBDS protein levels vary widely between specific marrow lineages. Uniformly low SBDS protein expression levels distinguish the majority of SDS patients from controls or other marrow failure syndromes.


Subject(s)
Bone Marrow Cells/metabolism , Bone Marrow Diseases/metabolism , Proteins/metabolism , Bone Marrow Diseases/genetics , Humans , Immunohistochemistry , Mutation , Proteins/genetics , Syndrome
20.
Blood ; 116(11): 1919-23, 2010 Sep 16.
Article in English | MEDLINE | ID: mdl-20519626

ABSTRACT

Langerhans cell histiocytosis (LCH) has a broad spectrum of clinical behaviors; some cases are self-limited, whereas others involve multiple organs and cause significant mortality. Although Langerhans cells in LCH are clonal, their benign morphology and their lack (to date) of reported recurrent genomic abnormalities have suggested that LCH may not be a neoplasm. Here, using 2 orthogonal technologies for detecting cancer-associated mutations in formalin-fixed, paraffin-embedded material, we identified the oncogenic BRAF V600E mutation in 35 of 61 archived specimens (57%). TP53 and MET mutations were also observed in one sample each. BRAF V600E tended to appear in younger patients but was not associated with disease site or stage. Langerhans cells stained for phospho-mitogen-activated protein kinase kinase (phospho-MEK) and phospho-extracellular signal-regulated kinase (phospho-ERK) regardless of mutation status. High prevalence, recurrent BRAF mutations in LCH indicate that it is a neoplastic disease that may respond to RAF pathway inhibitors.


Subject(s)
Genetic Predisposition to Disease , Histiocytosis, Langerhans-Cell/genetics , Mutation , Proto-Oncogene Proteins B-raf/genetics , Adolescent , Adult , Amino Acid Substitution , Antigens, CD1/metabolism , Child , Child, Preschool , DNA Mutational Analysis , Extracellular Signal-Regulated MAP Kinases/metabolism , Female , Fluorescent Antibody Technique , Genotype , Histiocytosis, Langerhans-Cell/metabolism , Histiocytosis, Langerhans-Cell/pathology , Humans , Infant , Male , Middle Aged , Neoplasm Staging , Young Adult
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