Taxonomy, distribution, and conservation status of a rare arboreal lizard, Bronchocela celebensis Gray, 1845 (Reptilia: Agamidae) endemic to Sulawesi, Indonesia.

Bronchocela celebensis Gray, 1845 is one of the rarest species of the genus, known only from less than 20 museum specimens collected from northern Sulawesi. It is often confused with its similar congener, B. cristatella, which occurs widely throughout the Indonesian Archipelago and Peninsular Malaysia, except on the Sulawesi mainland. Here, we examine the morphology of B. celebensis based on 46 museum specimens including freshly collected individuals, and redescribe the species based on the holotype (by monotypy). We studied the characters of B. celebensis with morphometric comparison to its allopatric congener B. cristatella from the adjacent islands of southern Sulawesi in Indonesia. Based on the current distribution pattern and the apparent threats, we update the conservation status of B. celebensis using the IUCN Red List Criteria and propose that it be considered as a Vulnerable (VU) species endemic to Sulawesi.

Systematics and distribution of Lankascincus fallax (Peters, 1860) (Reptilia, Scincidae), an endemic litter-skink from Sri Lanka.

Lankascincus fallax is an endemic, but widespread species of skink distributed throughout Sri Lanka, including all bioclimatic zones (elevations from 0 to 1,200 m a.s.l.). After thoroughly comparing morphology and morphometry between populations in different bioclimatic zones, we recognize it as a single morphospecies. We revise the systematics of Lankascincus fallax based on molecular and morphological data providing a comprehensive re-description of the adult syntype collected from either Ratnapura or Trinkomalee (sic), Sri Lanka. We provide the first-ever constructed phylogeny of Lankascincus representing five species (out of nine) based on GenBank data. In addition, we examined all the type specimens of the two synonymized species, Sphenomorphus rufogulus and Lankascincus deraniyagalae. We also provide a comprehensive discussion on the distribution of L. fallax.

Ancient DNA elucidates the lost world of western Indian Ocean giant tortoises and reveals a new extinct species from Madagascar.

Before humans arrived, giant tortoises occurred on many western Indian Ocean islands. We combined ancient DNA, phylogenetic, ancestral range, and molecular clock analyses with radiocarbon and paleogeographic evidence to decipher their diversity and biogeography. Using a mitogenomic time tree, we propose that the ancestor of the extinct Mascarene tortoises spread from Africa in the Eocene to now-sunken islands northeast of Madagascar. From these islands, the Mascarenes were repeatedly colonized. Another out-of-Africa dispersal (latest Eocene/Oligocene) produced on Madagascar giant, large, and small tortoise species. Two giant and one large species disappeared c. 1000 to 600 years ago, the latter described here as new to science using nuclear and mitochondrial DNA. From Madagascar, the Granitic Seychelles were colonized (Early Pliocene) and from there, repeatedly Aldabra (Late Pleistocene). The Granitic Seychelles populations were eradicated and later reintroduced from Aldabra. Our results underline that integrating ancient DNA data into a multi-evidence framework substantially enhances the knowledge of the past diversity of island faunas.

Galápagos tortoise stable isotope ecology and the 1850s Floreana Island Chelonoidis niger niger extinction.

A consequence of over 400 years of human exploitation of Galápagos tortoises (Chelonoidis niger ssp.) is the extinction of several subspecies and the decimation of others. As humans captured, killed, and/or removed tortoises for food, oil, museums, and zoos, they also colonized the archipelago resulting in the introduction of invasive plants, animals, and manipulated landscapes for farming, ranching, and infrastructure. Given current conservation and revitalization efforts for tortoises and their habitats, here we investigate nineteenth and twentieth century Galápagos tortoise dietary ecology using museum and archaeological specimens coupled with analysis of carbon (δ13Ccollagen and δ13Capatite), nitrogen (δ15N), hydrogen (δD) and oxygen (δ18Oapatite) stable isotopes and radiocarbon dating. We identify that Galápagos tortoise diets vary between and within islands over time, and that long-term anthropogenic impacts influenced change in tortoise stable isotope ecology by using 57 individual tortoises from 10 different subspecies collected between 1833 and 1967-a 134-year period. On lower elevation islands, which are often hotter and drier, tortoises tend to consume more C4 vegetation (cacti and grasses). Our research suggests human exploitation of tortoises and anthropogenic impacts on vegetation contributed to the extinction of the Floreana Island tortoise (C. n. niger) in the 1850s.

On the distribution of Gonyosoma prasinum (Blyth, 1854) and Gonyosoma coeruleum Liu, Hou, Ye Htet Lwin, Wang amp; Rao, 2021, with a note on the status of Gonyosoma gramineum Gnther, 1864 (Squamata: Serpentes: Colubridae).

Based on 85 examined specimens, photographs of living specimens and illustrations published in the literature, we refine the distribution ranges of both Gonyosoma prasinum (Blyth, 1854) and of the recently described species Gonyosoma coeruleum Liu, Hou, Ye Htet Lwin, Wang Rao, 2021, which was not clearly addressed in its original description. We also redescribe the syntypes of Coluber prasinus Blyth, 1854 and the holotype of Gonyosoma gramineum Gnther, 1864, we discuss the status of this latter taxon, and we describe the hemipenial morphology of G. coeruleum.

Taxonomy and predicted distribution of a rare Indian skink, Eutropis innotata (Blanford, 1870) (Reptilia: Scincidae) with the redescription of its holotype.

We examined the holotype of Euprepes innotatus Blanford, 1870 which was presented to the Natural History Museum, London (NHMUK) by Blanford himself, and is redescribed herein. Based on the morphological similarity, we placed Eutropis innotata within the E. carinata group (contra Blanford, 1870), as it is closely allied to E. dissimilis and E. carinata in morphological and morphometric traits. Based on the current distribution pattern, we conducted Species Distribution Modelling using the Maximum Entropy algorithm and the distribution range of this species was predicted to be wider than the currently known limits within the south-central parts of the Deccan plateau. Furthermore, we updated the conservation status of E. innotata using the criteria of the IUCN Red List, and suggested it be considered as a species of Least Concern.

On the systematic status of Calliophis macclellandi nigriventer Wall, 1908 (Reptilia: Serpentes: Elapidae).

Sinomicrurus macclellandi (Reinhardt, 1844) is a species of coral snakes distributed across the forests of Southeast Asia and the Himalayas. The species exhibits distinct forms across its range, and it has been classified into four subspecies. Calliophis macclellandi nigriventer Wall, 1908 a population from Western Himalayas, which was described as a variety, has not been attended to until now. Our study of a recently collected specimen from near Solan, Himachal Pradesh, India and existing museum material has allowed us to assess the validity of this population based on molecular and morphological data and has given us enough evidence to suggest its elevation to a species rank. Sinomicrurus nigriventer comb. nov. was found to be embedded within a clade comprising S. peinani, but not S. macclellandi s. l., with a genetic distance of 7-16% from its congeners. Morphologically, it differs from its congeners in having a reddish brown dorsum and a mid-dorsal black vertebral strip extending from the nape to the vent and with three thin bands on the tail, belly white with black smear up to the vent, tail dorsum with a few band-like blotches, and males with 230-235 ventral scales.

Dragons in neglect: Taxonomic revision of the Sulawesi sailfin lizards of the genus Hydrosaurus Kaup, 1828 (Squamata, Agamidae).

Currently three different species are recognized within the Southeast Asian agamid genus Hydrosaurus: H. amboinensis (Schlosser, 1768) from Ambon, Seram, Sulawesi and New Guinea, H. pustulatus (Eschscholtz, 1829) from the Philippines and H. weberi Barbour, 1911 from Halmahera and adjacent islands. Historically, two additional species were described from the island of Sulawesi, but were synonymized with H. amboinensis more than a century ago and have been treated as such in most subsequent publications. In order to revise the taxonomy and diversity of these enigmatic agamid lizards, we examined the corresponding type specimens and additional material originating from Sulawesi and compared them to photographs of live specimens from field trips. Due to differences in colour pattern and scalation characters, we resurrect the taxa celebensis Peters, 1872 and microlophus Bleeker, 1860 from the synonymy of H. amboinensis, which in turn is restricted to the central Moluccas and New Guinea. Hence, Sulawesi is currently the only known island within the genus' range to be inhabited by two different species of sailfin lizards. Our systematic investigation brings the number of recognized species within the genus Hydrosaurus to five.

Annotated catalogue of chameleon types in the collection of the Natural History Museum, UK (NHMUK) (Reptilia: Squamata: Chamaeleonidae).

We provide a list of type specimens of chameleons present in the collection of the Natural History Museum in London for the first time, including their associated collection numbers. Currently the collection contains 54 primary types (29 holotypes, two lectotypes and 23 syntype series plus two syntypes where the type status is in doubt) as well as numerous secondary types for 12 species (nine paratype and three paralectotype series). Type material present in the collection represents 39 valid chamaeleon taxa.

Genomic analyses reveal two species of the matamata (Testudines: Chelidae: Chelus spp.) and clarify their phylogeography.

The matamata is one of the most charismatic turtles on earth, widely distributed in northern South America. Debates have occurred over whether or not there should be two subspecies or species recognized due to its geographic variation in morphology. Even though the matamata is universally known, its natural history, conservation status and biogeography are largely unexplored. In this study we examined the phylogeographic differentiation of the matamata based on three mitochondrial DNA fragments (2168 bp of the control region, cytochrome oxidase subunit I, and the cytochrome b gene), one nuclear genomic DNA fragment (1068 bp of the R35 intron) and 1661 Single Nucleotide Polymorphisms (SNPs). Our molecular and morphological analyses revealed the existence of two distinct, genetically deeply divergent evolutionary lineages of matamatas that separated in the late Miocene (approximately 12.7 million years ago), corresponding well to the time when the Orinoco Basin was established. As a result of our analyses, we describe the genetically and morphologically highly distinct matamata from the Orinoco and Río Negro Basins and the Essequibo drainage as a species new to science (Chelus orinocensis sp. nov.). Chelus fimbriata sensu stricto is distributed in the Amazon Basin and the Mahury drainage. Additionally, the analyses revealed that each species displays phylogeographic differentiation. For C. orinocensis, there is moderate mitochondrial differentiation between the Orinoco and the Río Negro. For C. fimbriata, there is more pronounced differentiation matching different river systems. One mitochondrial clade was identified from the Amazon, Ucayali, and Mahury Rivers, and another one from the Madeira and Jaci Paraná Rivers. The C. orinocensis in the Essequibo and Branco Rivers have haplotypes that constitute a third clade clustering with C. fimbriata. Phylogenetic analyses of the R35 intron and SNP data link the matamatas from the Essequibo and Branco with the new species, suggesting past gene flow and old mitochondrial introgression. Chelus orinocensis is collected for the pet trade in Colombia and Venezuela. However, neither the extent of the harvest nor its impact are known. Hence, it is crucial to gather more information and to assess its exploitation throughout its distribution range to obtain a better understanding of its conservation status and to design appropriate conservation and management procedures. RESUMEN: La matamata es una de las tortugas más carismáticas del mundo, ampliamente distribuida en el norte de Sudamérica. Debido a su variación morfológica geográfica, se debate sobre el reconocimiento de dos subespecies o especies. A pesar de que la matamata es universalmente conocida, su historia natural, estado de conservación y biogeografía han sido muy poco estudiados. En este estudio examinamos la diferenciación filogeográfica de las matamatas en base ​​a tres fragmentos de ADN mitocondrial (2168 pb de la región de control, la subunidad I del citocromo oxidasa y el gen del citocromo b), un fragmento de ADN genómico nuclear (1068 pb del intrón R35) y 1661 polimorfismos de nucleótido único (SNPs). Nuestros análisis moleculares y morfológicos revelaron la existencia de dos linajes evolutivos distintos de matamatas, genéticamente divergentes que se separaron en el Mioceno tardio (hace aproximadamente 12.7 millones de años), correspondiendo al tiempo en que se estableció la cuenca del Orinoco. Como resultado de nuestros análisis, describimos las genéticamente y morfológicamente distintas matamatas de las cuencas del Orinoco, Río Negro y Essequibo como una especie nueva para la ciencia (Chelus orinocensis sp. nov.). Chelus fimbriata sensu stricto se distribuye en la cuenca del Amazonas y en el drenaje del Mahury. Adicionalmente, los análisis revelaron que cada especie muestra diferenciación filogeográfica. Para C. orinocensis, hay una moderada diferenciación mitocondrial entre el Orinoco y el Río Negro. Para C. fimbriata, hay una diferenciación más pronunciada, concordando con los diferentes sistemas fluviales. Se identificó un clado de los ríos Amazonas, Ucayali y Mahury y otro de los ríos Madeira y Jaci Paraná. Las C. orinocensis de los ríos Essequibo y Branco tienen haplotipos que constituyen un tercer clado que se agrupa con C. fimbriata. Los análisis filogenéticos del intrón R35 y los datos de SNP asocian las matamatas de Essequibo y Branco con la nueva especie, sugiriendo flujo de genes pasado ​​e introgresión mitocondrial antigua. Chelus orinocensis se colecta para el comercio de mascotas en Colombia y Venezuela. Sin embargo, ni se conoce el alcance de las colectas ni su impacto. Por lo tanto, es crucial recopilar más información y evaluar su explotación en todo su rango de distribución, comprender mejor su estado de conservación y para diseñar acciones apropiadas de conservación y manejo.

A global catalog of primary reptile type specimens.

We present information on primary type specimens for 13,282 species and subspecies of reptiles compiled in the Reptile Database, that is, holotypes, neotypes, lectotypes, and syntypes. These represent 99.4% of all 13,361 currently recognized taxa (11,050 species and 2311 subspecies). Type specimens of 653 taxa (4.9%) are either lost or not located, were never designated, or we did not find any information about them. 51 species are based on iconotypes. To map all types to physical collections we have consolidated all synonymous and ambiguous collection acronyms into an unambiguous list of 364 collections holding these primary types. The 10 largest collections possess more than 50% of all (primary) reptile types, the 36 largest collections possess more than 10,000 types and the largest 73 collections possess over 90% of all types. Of the 364 collections, 107 hold type specimens of only 1 species or subspecies. Dozens of types are still in private collections. In order to increase their utility, we recommend that the description of type specimens be supplemented with data from high-resolution images and CT-scans, and clear links to tissue samples and DNA sequence data (when available). We request members of the herpetological community provide us with any missing type information to complete the list.

Rediscovery of Cnemaspis nilagirica Manamendra-Arachchi, Batuwita and Pethiyagoda, 2007 (Squamata: Gekkonidae) from Kerala, India with notes on morphology and distribution.

Cnemaspis nilagirica was described by Manamendra-Arachchi, Batuwita and Pethiyagoda in 2007 based on a single female specimen that was a syntype of Gonatodes kandianus var. tropidogaster described by Boulenger in 1885. However, a living population of this species has not been reported since its original description by Boulenger. Based on fresh material and comparisons with the holotype of C. nilagirica, we here report the collection of this species after over 130 years. We provide the first description of a male specimen and additional information on morphological variation, distribution and natural history.

A contribution to the systematics of Salea anamallayana (Beddome, 1878) and S. horsfieldii Gray, 1845 (Squamata: Agamidae: Draconinae).

Salea anamallayana (Beddome, 1878) and S. horsfieldii Gray, 1845 are two endemic montane forest dwelling draconine agamid lizards from the Western Ghats (India). The original descriptions of these two species were brief and apart from their inclusion in general faunal works, they have never been the focus of a rigorous taxonomic study. In this paper we provide a detailed redescription of the types of those two species. We also reconfirm the status of the subjective synonyms of those two species. We conducted a test of niche conservatism and on the basis of the results of this analysis, we demonstrate that in spite of occurring in apparently analogous habitats, the niche of the two species have diverged significantly. We also provide notes on the distribution and natural history of S. anamallayana and S. horsfieldii.

Description of a cryptic new species of Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the Western Ghats of Kerala State of India.

We describe a cryptic new species of gecko of the genus Cnemaspis Strauch from the southern Western Ghats of Kerala. This medium-sized Cnemaspis species is differentiated from all other Indian congeners by a suite of the following distinct morphological characters: heterogeneous mid-dorsal scales, 6-7 supralabials; 113-120 paravertebral rows of tubercles; 71-85 mid-dorsal scales; absence of spine-like tubercles on flanks; subimbricate, smooth ventral scales; 135-140 mid-ventral scales; subdigital lamellae under fourth digit of manus 23-25; subdigital lamellae under fourth digit of pes 24-25; males with 7-8 precloacal pores; median row of subcaudals enlarged, smooth, a series of two large scales alternating, containing one divided scale; head and neck colouration brownish-yellow, consistent in adult males; adult females with orange coloured head and neck. Recent new descriptions of Cnemaspis species together with the present discovery show that the southern Western Ghats species have been overlooked by previous studies. Therefore we suggest further studies to evaluate the diversity of Cnemaspis in this region.

Liolaemus jamesi (Boulenger, 1891): restriction of the type locality and holotype characterization (Squamata: Liolaemidae).

Liolaemus is one of the most diverse genus of lizards in the world (Esquerré et al. 2013), with 257 species listed in the last review focusing on its diversity (Abdala Quinteros 2014). Certain species within this genus, especially the earlier ones, were described in very little detail, even lacking an appropriate description of the holotype and/or type locality. This has created uncertainties in the taxonomic identity of several Liolaemus species (Espinoza et al. 2011; Quinteros et al. 2008; Troncoso-Palacios Garin 2013; Langstroth 2011).

Catalogue of type specimens of the agamid lizard genus Japalura s. l. (Squamata: Agamidae: Draconinae).

The genus Japalura Gray, 1853 s. l. currently comprises 34 species (Japalura n=7; Cristidorsa Wang, Deepak, Datta-Roy, Lin, Jiang, Che Siler, 2018, n=2; Diploderma Hallowell, 1861, n=25). Furthermore the species Diploderma polygonatum is composed of its nominate form and three additional subspecies. For all but one species primary types (holo-, syn- or lectotypes) are available, and in most cases paratypical specimens have also been deposited. The type specimen of Japalura yunnannensis appears to be lost.

Ancient mitogenomics clarifies radiation of extinct Mascarene giant tortoises (Cylindraspis spp.).

The five extinct giant tortoises of the genus Cylindraspis belong to the most iconic species of the enigmatic fauna of the Mascarene Islands that went largely extinct after the discovery of the islands. To resolve the phylogeny and biogeography of Cylindraspis, we analysed a data set of 45 mitogenomes that includes all lineages of extant tortoises and eight near-complete sequences of all Mascarene species extracted from historic and subfossil material. Cylindraspis is an ancient lineage that diverged as early as the late Eocene. Diversification of Cylindraspis commenced in the mid-Oligocene, long before the formation of the Mascarene Islands. This rejects any notion suggesting that the group either arrived from nearby or distant continents over the course of the last millions of years or had even been translocated to the islands by humans. Instead, Cylindraspis likely originated on now submerged islands of the Réunion Hotspot and utilized these to island hop to reach the Mascarenes. The final diversification took place both before and after the arrival on the Mascarenes. With Cylindraspis a deeply divergent clade of tortoises became extinct that evolved long before the dodo or the Rodrigues solitaire, two other charismatic species of the lost Mascarene fauna.

Additional data on the herpetological collection of Louis Amédée Lantz (1886-1953), with emphasis on specimens in the Natural History Museum, London.

Several recent papers have reviewed the life and work of French herpetologist Louis Amédée Lantz. They have detailed the composition of his collections deposited in several museums. However, since then, several other important specimens from his collections deposited at the Natural History Museum (NHM, UK) have come to light and we here present all of them in detail. We discovered paralectotypes of Lacerta saxicola obscura Lantz Cyrén (BMNH 1918.11.21.5-7), syntypes of Lacerta boemica Sukhov (BMNH 1960.1.4.26-30, BMNH 1965.337-342) and Lacerta viridis media Lantz Cyrén (BMNH 1960.1.4.25, 1966.512). We also identified numerous specimens from the French Mediterranean islands in Lantz's collection deposited at the NHM, some of which represent the first reported specimens of their species from certain islands. We here provide data on all these specimens. We also place the Mediterranean island specimens from the Lantz collection in their historical context and emphasize the historical and taxonomic value of these collections.

Mitogenomics of historical type specimens of Australasian turtles: clarification of taxonomic confusion and old mitochondrial introgression.

Diagnosability is central to taxonomy as are type specimens which define taxa. New advances in technologies and the discovery of new informative traits must be matched with previous taxonomic decisions based on name-bearing type specimens. Consequently, the challenge of sequencing highly degraded DNA from historical types becomes an inevitability to resolve the very many taxonomic issues arising from, by modern standards, poor historical species descriptions leading to difficulties to assign names to genetic clusters identified from fresh material. Here we apply high-throughput parallel sequencing and sequence baiting to reconstruct the mitogenomes from 18 type specimens of Australasian side-necked turtles (Chelidae). We resolve a number of important issues that have confused the taxonomy of this family, and analyse the mitogenomes of the types and those of fresh material to improve our understanding of the phylogenetic relationships of this morphologically conservative group. Together with previously published nuclear genomic data, our study provides evidence for multiple old mitochondrial introgressions.