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1.
J Comput Chem ; 44(3): 406-421, 2023 01 30.
Article in English | MEDLINE | ID: mdl-35789492

ABSTRACT

Quantum computers are special purpose machines that are expected to be particularly useful in simulating strongly correlated chemical systems. The quantum computer excels at treating a moderate number of orbitals within an active space in a fully quantum mechanical manner. We present a quantum phase estimation calculation on F2 in a (2,2) active space on Rigetti's Aspen-11 QPU. While this is a promising start, it also underlines the need for carefully selecting the orbital spaces treated by the quantum computer. In this work, a scheme for selecting such an active space automatically is described and simulated results obtained using both the quantum phase estimation (QPE) and variational quantum eigensolver (VQE) algorithms are presented and combined with a subtractive method to enable accurate description of the environment. The active occupied space is selected from orbitals localized on the chemically relevant fragment of the molecule, while the corresponding virtual space is chosen based on the magnitude of interactions with the occupied space calculated from perturbation theory. This protocol is then applied to two chemical systems of pharmaceutical relevance: the enzyme [Fe] hydrogenase and the photosenzitizer temoporfin. While the sizes of the active spaces currently amenable to a quantum computational treatment are not enough to demonstrate quantum advantage, the procedure outlined here is applicable to any active space size, including those that are outside the reach of classical computation.


Subject(s)
Computing Methodologies , Quantum Theory , Algorithms , Pharmaceutical Preparations
2.
J Chem Theory Comput ; 18(12): 7001-7023, 2022 Dec 13.
Article in English | MEDLINE | ID: mdl-36355616

ABSTRACT

Computational chemistry is an essential tool in the pharmaceutical industry. Quantum computing is a fast evolving technology that promises to completely shift the computational capabilities in many areas of chemical research by bringing into reach currently impossible calculations. This perspective illustrates the near-future applicability of quantum computation of molecules to pharmaceutical problems. We briefly summarize and compare the scaling properties of state-of-the-art quantum algorithms and provide novel estimates of the quantum computational cost of simulating progressively larger embedding regions of a pharmaceutically relevant covalent protein-drug complex involving the drug Ibrutinib. Carrying out these calculations requires an error-corrected quantum architecture that we describe. Our estimates showcase that recent developments on quantum phase estimation algorithms have dramatically reduced the quantum resources needed to run fully quantum calculations in active spaces of around 50 orbitals and electrons, from estimated over 1000 years using the Trotterization approach to just a few days with sparse qubitization, painting a picture of fast and exciting progress in this nascent field.


Subject(s)
Computing Methodologies , Quantum Theory , Drug Discovery , Electrons , Pharmaceutical Preparations
3.
Sensors (Basel) ; 18(12)2018 Dec 07.
Article in English | MEDLINE | ID: mdl-30544537

ABSTRACT

Omnidirectional sound sources are needed to perform a large variety of tests in acoustics. Typically, they consist of conventional speaker drivers arranged in a dodecahedron. However, the directivity of the speaker drivers sharpens with frequency, which induces an intense decrease of the sound pressure levels at the edges of the dodechaedron. In this work, the problem is mitigated by building an Omnidirectional Parametric Loudspeaker (OPL), which contains hundreds of small ultrasound transducers set on a sphere. Each transducer emits an ultrasonic carrier wave modulated by an audible signal. Thanks to nonlinear propagation, the air itself demodulates the signal bringing it back to the audible range. The construction of an OPL prototype is challenging. The structure has been built by 3D-printing a set of pieces that conform to the sphere. Each piece contains the exact location of the transducers, which are aligned in parallels to facilitate the structural assembly and the wiring. The performance of the OPL has been tested in an anechoic chamber. Measurements show that the OPL has a good omnidirectional behavior for most frequencies. It clearly improves the directivity of dodechaedral sources in the high frequency range, but performs worse at low frequencies.

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