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1.
J Intern Med ; 283(5): 461-475, 2018 05.
Article in English | MEDLINE | ID: mdl-29415332

ABSTRACT

BACKGROUND: CCL23 role in the inflammatory response after acute brain injuries remains elusive. Here, we evaluated whether CCL23 blood levels associate with acquired cerebral lesions and determined CCL23 predictive capacity for assessing stroke prognosis. We used preclinical models to study the CCL23 homologous chemokines in rodents, CCL9 and CCL6. METHODS: Baseline CCL23 blood levels were determined on 245 individuals, including ischaemic strokes (IS), stroke mimics and controls. Temporal profile of circulating CCL23 was explored from baseline to 24 h in 20 of the IS. In an independent cohort of 120 IS with a 3-month follow-up, CCL23 blood levels were included in logistic regression models to predict IS outcome. CCL9/CCL6 cerebral expression was evaluated in rodent models of brain damage. Both chemokines were also profiled in circulation and histologically located on brain following ischaemia. RESULTS: Baseline CCL23 blood levels did not discriminate IS, but permitted an accurate discrimination of patients presenting acute brain lesions (P = 0.003). IS exhibited a continuous increase from baseline to 24 h in circulating CCL23 (P < 0.001). Baseline CCL23 blood levels resulted an independent predictor of IS outcome at hospital discharge (ORadj : 19.702 [1.815-213.918], P = 0.014) and mortality after 3 months (ORadj : 21.47 [3.434-134.221], P = 0.001). In preclinics, expression of rodent chemokines in neurons following cerebral lesions was elevated. CCL9 circulating levels decreased early after ischaemia (P < 0.001), whereas CCL6 did not alter within the first 24 h after ischaemia. CONCLUSIONS: Although preclinical models do not seem suitable to characterize CCL23, it might be a novel promising biomarker for the early diagnosis of cerebral lesions and might facilitate the prediction of stroke patient outcome.


Subject(s)
Chemokines, CC/blood , Stroke/blood , Stroke/mortality , Aged , Aged, 80 and over , Animals , Biomarkers/blood , Case-Control Studies , Chemokines/metabolism , Disease Models, Animal , Early Diagnosis , Female , Follow-Up Studies , Humans , Macrophage Inflammatory Proteins/blood , Male , Mice, Inbred C57BL , Neurons/metabolism , Neutrophils/metabolism , Prognosis , Rats, Wistar , Stroke/diagnosis , Up-Regulation
2.
Oncogene ; 36(19): 2737-2749, 2017 05 11.
Article in English | MEDLINE | ID: mdl-27991928

ABSTRACT

Inhibitors of the mechanistic target of rapamycin (mTOR) are currently used to treat advanced metastatic breast cancer. However, whether an aggressive phenotype is sustained through adaptation or resistance to mTOR inhibition remains unknown. Here, complementary studies in human tumors, cancer models and cell lines reveal transcriptional reprogramming that supports metastasis in response to mTOR inhibition. This cancer feature is driven by EVI1 and SOX9. EVI1 functionally cooperates with and positively regulates SOX9, and promotes the transcriptional upregulation of key mTOR pathway components (REHB and RAPTOR) and of lung metastasis mediators (FSCN1 and SPARC). The expression of EVI1 and SOX9 is associated with stem cell-like and metastasis signatures, and their depletion impairs the metastatic potential of breast cancer cells. These results establish the mechanistic link between resistance to mTOR inhibition and cancer metastatic potential, thus enhancing our understanding of mTOR targeting failure.


Subject(s)
Breast Neoplasms/genetics , DNA-Binding Proteins/genetics , Lung Neoplasms/genetics , Proto-Oncogenes/genetics , SOX9 Transcription Factor/genetics , TOR Serine-Threonine Kinases/genetics , Transcription Factors/genetics , Adaptor Proteins, Signal Transducing/genetics , Adult , Aged , Breast Neoplasms/pathology , Carrier Proteins/genetics , Cell Proliferation/genetics , Female , Gene Expression Regulation, Neoplastic , Humans , Lung Neoplasms/pathology , Lung Neoplasms/secondary , MCF-7 Cells , MDS1 and EVI1 Complex Locus Protein , Microfilament Proteins/genetics , Middle Aged , Neoplasm Metastasis , Osteonectin/genetics , Regulatory-Associated Protein of mTOR , Signal Transduction/genetics , TOR Serine-Threonine Kinases/antagonists & inhibitors , Xenograft Model Antitumor Assays
3.
Heredity (Edinb) ; 116(1): 114-23, 2016 01.
Article in English | MEDLINE | ID: mdl-26328758

ABSTRACT

Physiological changes associated with evolutionary and ecological processes such as diversification, range expansion or speciation are still incompletely understood, especially for non-model species. Here we study differences in protein expression in response to temperature in a western Mediterranean diving beetle species complex, using two-dimensional differential gel electrophoresis with one Moroccan and one Iberian population each of Agabus ramblae and Agabus brunneus. We identified proteins with significant expression differences after thermal treatments comparing them with a reference EST library generated from one of the species of the complex (A. ramblae). The colonisation during the Middle Pleistocene of the Iberian peninsula by A. ramblae, where maximum temperatures and seasonality are lower than in the ancestral north African range, was associated with changes in the response to 27 °C in proteins related to energy metabolism. The subsequent speciation of A. brunneus from within populations of Iberian A. ramblae was associated with changes in the expression of several stress-related proteins (mostly chaperons) when exposed to 4 °C. These changes are in agreement with the known tolerance to lower temperatures of A. brunneus, which occupies a larger geographical area with a wider range of climatic conditions. In both cases, protein expression changes paralleled the evolution of thermal tolerance and the climatic conditions experienced by the species. However, although the colonisation of the Iberian peninsula did not result in morphological change, the speciation process of A. brunneus within Iberia involved genetic isolation and substantial differences in male genitalia and body size and shape.


Subject(s)
Biological Evolution , Climate , Coleoptera/genetics , Insect Proteins/genetics , Temperature , Animals , Coleoptera/classification , Energy Metabolism/genetics , Male , Morocco , Phylogeny , Proteome , Spain
4.
Oncogene ; 33(9): 1190-7, 2014 Feb 27.
Article in English | MEDLINE | ID: mdl-23435426

ABSTRACT

The HER family is composed of four receptor tyrosine kinases, which are frequently deregulated in several types of cancer. Activated HER receptors initiate intracellular signalling pathways by attracting to the plasma membrane a plethora of adaptor and signalling molecules. Although there are more than a dozen HER-interacting proteins that regulate signal transduction and have been extensively studied, recent proteomic studies have shown the existence of many novel but largely uncharacterized factors that may bind HER receptors. In this report, we describe a cell-based identification of several new HER2-binding proteins, including HAX1, YWHAZ, PELO and ACP1. Analysis of these factors showed that one of them, PELO, binds to active HER2 and epidermal growth factor receptor and thereby attenuates phosphatidylinositol 3-kinase (PI3K)/AKT signalling, likely through regulation of the recruitment of p85-PI3K to activated receptor. Functional characterization of PELO showed that it negatively regulates cell migration and metastasis in vivo. These results reveal that PELO is a novel regulator of HER-signalling and therefore is likely to have a role in inhibiting tumour progression and invasion.


Subject(s)
Microfilament Proteins/genetics , Neoplasm Metastasis/genetics , Receptor, ErbB-2/genetics , Signal Transduction/genetics , Adaptor Proteins, Signal Transducing/genetics , Adaptor Proteins, Signal Transducing/metabolism , Animals , Cell Line, Tumor , Cell Movement/genetics , Endonucleases , ErbB Receptors/genetics , ErbB Receptors/metabolism , Female , Humans , MCF-7 Cells , Mice , Mice, Inbred BALB C , Mice, Nude , Microfilament Proteins/metabolism , Nuclear Proteins , Phosphatidylinositol 3-Kinases/genetics , Phosphatidylinositol 3-Kinases/metabolism , Proteomics/methods , Proto-Oncogene Proteins c-akt/genetics , Proto-Oncogene Proteins c-akt/metabolism , Receptor, ErbB-2/metabolism
5.
Oncogene ; 32(11): 1452-9, 2013 Mar 14.
Article in English | MEDLINE | ID: mdl-22641219

ABSTRACT

The transmembrane tyrosine kinase HER2 (ErbB2, neu) is a prototypical biomarker for breast cancers and a therapeutic target. Although anti-HER2 therapies are remarkably effective, HER2-positive tumors are heterogeneous and some subtypes do not respond or develop resistance to these therapies. Here we show that H2NTF, a novel N-terminal fragment of HER2, is expressed at variable levels in 60% of the breast cancer samples analyzed. Characterization of H2NTF shows that it is devoid of the tyrosine kinase domain but it readily interacts with full-length HER2 and other HER receptors. As a consequence, H2NTF acts as a dominant-negative, attenuating the signaling triggered by full-length HER receptors. Expression of H2NTF results in resistance to the treatment with low concentrations of trastuzumab in vitro. However, cells expressing H2NTF and non-expressing cells have similar sensitivity to trastuzumab in vivo, indicating that H2NTF/trastuzumab complexes trigger antibody-dependent cell-mediated cytotoxicity.


Subject(s)
Breast Neoplasms/genetics , Carcinoma/genetics , Receptor, ErbB-2/chemistry , Receptor, ErbB-2/genetics , Amino Acid Sequence , Animals , Breast Neoplasms/epidemiology , Carcinoma/epidemiology , Female , Gene Expression Regulation, Neoplastic , Gene Frequency , Genes, Dominant , HEK293 Cells , Humans , Mice , Mice, Inbred BALB C , Mice, Inbred NOD , Mice, Nude , Mice, SCID , Models, Biological , Molecular Sequence Data , Protein Isoforms/chemistry , Protein Isoforms/genetics , Protein Structure, Tertiary/genetics , Protein Structure, Tertiary/physiology , Receptor, ErbB-2/metabolism , Tumor Cells, Cultured
6.
J Proteome Res ; 12(1): 112-22, 2013 Jan 04.
Article in English | MEDLINE | ID: mdl-23234512

ABSTRACT

The Chromosome 16 Consortium forms part of the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a chromosome-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). A Spanish consortium of 16 laboratories was organized into five working groups: Protein/Antibody microarrays, protein expression and Peptide Standard, S/MRM, Protein Sequencing, Bioinformatics and Clinical healthcare, and Biobanking. The project is conceived on a multicenter configuration, assuming the standards and integration procedures already available in ProteoRed-ISCIII, which is encompassed within HUPO initiatives. The products of the 870 protein coding genes in chromosome 16 were analyzed in Jurkat T lymphocyte cells, MCF-7 epithelial cells, and the CCD18 fibroblast cell line as it is theoretically expected that most chromosome 16 protein coding genes are expressed in at least one of these. The transcriptome and proteome of these cell lines was studied using gene expression microarray and shotgun proteomics approaches, indicating an ample coverage of chromosome 16. With regard to the B/D section, the main research areas have been adopted and a biobanking initiative has been designed to optimize methods for sample collection, management, and storage under normalized conditions and to define QC standards. The general strategy of the Chr-16 HPP and the current state of the different initiatives are discussed.


Subject(s)
Chromosomes, Human, Pair 16 , Databases, Protein , Proteins , Proteome/analysis , Cell Line , Chromosomes, Human, Pair 16/genetics , Chromosomes, Human, Pair 16/metabolism , Gene Expression , Genome, Human , Humans , Mass Spectrometry , Proteins/classification , Proteins/genetics , Proteins/metabolism , Transcriptome
7.
J Neuroendocrinol ; 24(6): 944-52, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22296024

ABSTRACT

Body weight control is tightly regulated in the hypothalamus. The inaccessibility of human brain tissue can be partially solved by using cerebrospinal fluid (CSF) as a tool for assessing the central nervous system's production of orexigen and anorexigen factors. Using proteomic analysis, the present study investigated the differentially displayed proteins in human CSF from obese and non-obese subjects. We designed a case-control study conducted in a reference hospital where eight obese (cases) and eight non-obese (controls) women with idiopathic intracranial hypertension were included. Intracranial hypertension was normalised through the placement of a ventriculo- or lumboperitoneal shunt in the 12 months before their inclusion in the study. Isotope-coded protein label (for proteins > 10 kDa) and label-free liquid chromatography (for proteins < 10 kDa) associated with mass spectrometry analysis were used. Eighteen differentially expressed proteins were identified. Many of them fall into three main groups: inflammation (osteopontin, fibrinogen γ and ß chain, α1 acid glycoprotein 2 and haptoglobin), neuroendocrine mediators (neurosecretory protein VGF, neuroendocrine protein 7B2, chromogranin-A and chromogranin B), and brain plasticity (testican-1, isoform 10 of fibronectin, galectin-3 binding protein and metalloproteinase inhibitor type 2). The differential production of osteopontin, neurosecretory protein VGF, chromogranin-A and fibrinogen γ chain was further confirmed by either enzyme-linked immunosorbent assay or western blotting. In conclusion, we have identified potential candidates that could be involved in the pathogenesis of obesity. Further studies aiming to investigating the precise role of these proteins in the pathogenesis of obesity and their potential therapeutic implications are needed.


Subject(s)
Obesity/etiology , Proteomics/methods , Pseudotumor Cerebri/cerebrospinal fluid , Adult , Case-Control Studies , Female , Humans , Middle Aged , Obesity/cerebrospinal fluid , Obesity/physiopathology , Prospective Studies
8.
Oncogene ; 30(16): 1912-22, 2011 Apr 21.
Article in English | MEDLINE | ID: mdl-21170088

ABSTRACT

The activity of a variety of extracellular signaling factors is tightly regulated by proteins containing A Disintegrin And a Metalloprotease domain (ADAM) metalloproteases through limited proteolysis. Thus, the identification of ADAM substrates may unveil novel components and mechanisms of cell signaling pathways. We report the identification of the transmembrane protein vasorin (VASN), a transforming growth factor-ß (TGFß) trap, as a substrate of ADAM17. The metalloprotease efficiently generates a soluble fragment encompassing the extracellular domain of VASN. Despite the importance of TGFß in normal development and tumor progression, the regulation of VASN is completely unknown. Here, we show that only the soluble form of VASN inhibits TGFß and that the secretion of VASN is tightly controlled by ADAM17. Hence, inhibition of ADAM17 leads to the upregulation of TGFß signaling. Adding a new level of complexity to the function of ADAM17, we finally show that, through the cleavage of VASN, the metalloprotease controls TGFß-mediated epithelial-to-mesenchymal transition.


Subject(s)
ADAM Proteins/physiology , Carrier Proteins/metabolism , Membrane Proteins/metabolism , Signal Transduction/physiology , Transforming Growth Factor beta/physiology , ADAM17 Protein , Cell Line, Tumor , Epithelial-Mesenchymal Transition , Humans , Hydrolysis
9.
Nefrologia ; 30(2): 232-5, 2010.
Article in Spanish | MEDLINE | ID: mdl-20393623

ABSTRACT

INTRODUCTION: Measurement of dialysis dose by methods based on urea kinetics (Kt/VUREA) are hardly applicable to critical ill patients with acute renal failure (ARF). However, it is the base of the ADQI consensus recommendation for the target minimum dose. OBJECTIVE: To evaluate the usefulness of the real-time measurement of delivered dialysis dose (Kt) by means of the ionic dialysance (KtID) in the critically ill patient and to compare adequacy of dialysis dose between KtID and traditional Kt/V(UREA). MATERIAL AND METHODS: Prospective observational study in 17 critically ill patients with ARF requiring acute hemodialysis with a predefined prescription for the study (51 measures). RESULTS: The mean delivered Kt/V(UREA) was 1.19 +/- 0.14, with 59% of the sessions with values equal or above the ADQI recommendation. On the contrary, the mean KtID values obtained was 37.6 +/- 1 l, with only 29.4% of the sessions being equal or greater than the recommended values. CONCLUSIONS: Dialysis dose monitoring by means of KtID reveals a lower degree of adequacy as compared to the traditional Kt/V(UREA) method. The dynamic character of KtID monitoring can allow the adaptation of each dialysis session ("K" and/or "t") in order to achieve the recommended dose.


Subject(s)
Acute Kidney Injury/therapy , Algorithms , Metabolic Clearance Rate , Monitoring, Physiologic/methods , Renal Dialysis , Urea/blood , Acute Kidney Injury/blood , Aged , Automation , Critical Illness , Female , Hemodialysis Solutions/chemistry , Hemodialysis Solutions/pharmacokinetics , Humans , Male , Middle Aged , Monitoring, Physiologic/instrumentation , Monitoring, Physiologic/statistics & numerical data , Osmolar Concentration , Prospective Studies , Renal Dialysis/instrumentation , Renal Dialysis/statistics & numerical data , Shock, Septic/blood , Shock, Septic/therapy
10.
Nefrología (Madr.) ; 30(2): 232-235, mar.-abr. 2010. ilus, tab
Article in Spanish | IBECS | ID: ibc-104536

ABSTRACT

Introducción: La medida de la dosis de hemodiálisis basada en la cinética de la urea (Kt/VUREA) adolece de problemas de aplicabilidad en el paciente crítico con insuficiencia renal aguda (IRA). No obstante, las recomendaciones de consenso sobre la dosis se basan en el Kt/VUREA. Objetivo: Evaluarla utilidad de la medida en tiempo real de la dosis de diálisis suministrada (Kt) mediante dialisancia iónica (KtDI)en el paciente crítico y el grado de adecuación de la dosis en comparación con la medida estándar del Kt/VUREA. Materialy métodos: Estudio prospectivo observacional de medida de dosis en 17 pacientes críticos con IRA sometidos a3 sesiones de diálisis intermitente con prescripción predefinida para este estudio (en total 51 medidas). Resultados: El Kt/VUREA medio suministrado por sesión fue de 1,19 ±0,14, con un 59% de sesiones consideradas adecuadas por lo recomendado por la ADQI. Por el contrario, la media de KtDI obtenida fue de 37,6 ± 1 l, con sólo un 29,4% igual o por encima del valor mínimo recomendado. Conclusiones: La monitorización de la dosis mediante KtDI revela un menor grado de adecuación en comparación con el Kt/VUREA. El carácter dinámico de la medida de KtDI puede permitirla adaptación de cada sesión de diálisis («K» y/o «t») con el fin de lograr el objetivo de dosis mínima (AU)


Introduction: Measurement of dialysis dose by methods based on urea kinetics (Kt/VUREA) are hardly applicable to critical ill patients with acute renal failure (ARF). However, it is the base of the ADQI consensus recommendation for the target minimum dose. Objetive: To evaluate the usefulness of the real-time measurement of delivered dialysis dose (Kt) by means of the ionic dialysance (KtID) in the critically ill patient and to compare adequacy of dialysis dose between KtID and traditional Kt/VUREA. Material and methods: Prospective observational study in 17 critically ill patients with ARF requiring acute hemodialysis with a predefined prescription for the study (51 measures). Results: The mean delivered Kt/VUREA was 1.19 ± 0.14, with 59% of the sessions with values equal or above the ADQI recommendation. On the contrary, the mean KtID values obtained was 37.6 ± 1 l, with only 29.4%of the sessions being equal or greater than the recommended values. Conclusions: Dialysis dose monitoring by means of KtI Dreveals a lower degree of adequacy as compared to the traditional Kt/VUREA method. The dynamic character of KtID monitoring can allow the adaptation of each dialysis sessions(«K» and/or «t») in order to achieve the recommended dose (AU)


Subject(s)
Humans , Acute Kidney Injury/therapy , Renal Replacement Therapy/methods , Critical Care/methods , Dialysis Solutions/pharmacokinetics , Urea/analysis , Ion Transport/physiology , Prospective Studies
11.
Diabetologia ; 52(12): 2633-41, 2009 Dec.
Article in English | MEDLINE | ID: mdl-19823802

ABSTRACT

AIMS/HYPOTHESIS: Interphotoreceptor retinoid-binding protein (IRBP) plays a major role in the visual cycle and is essential to the maintenance of photoreceptors. The aim of this study was to determine whether a decrease in IRBP production exists in the early stages of diabetic retinopathy. METHODS: Vitreous samples from diabetic patients with proliferative and non-proliferative diabetic retinopathy (PDR, NPDR), and from non-diabetic patients with macular hole (control group) were selected for IRBP quantitative assessment by proteomic analysis (fluorescence-based difference gel electrophoresis) and western blot. Human post mortem eyes (n = 16) from diabetic donors without clinically detectable retinopathy and from non-diabetic donors (n = 16) were used to determine IRBP (also known as RBP3) mRNA levels (RT-PCR) and protein content (western blot and confocal microscopy). Retinal neurodegeneration was assessed by measuring glial fibrillar acidic protein (GFAP) and the apoptotic rate. Y79 human retinoblastoma cells were used to test the effects of glucose, TNF-alpha and IL-1beta on IRBP expression and IRBP levels. RESULTS: Intravitreous IRBP concentration was significantly lower in PDR < NPDR < control in proteomic and western blot analysis. IRBP mRNA levels and IRBP protein content were significantly lower in the retinas from diabetic donors than in those from non-diabetic donors. Increased GFAP and a higher degree of apoptosis were observed in diabetic retinas compared with non-diabetic retinas. A dose-dependent downregulation of IRBP mRNA expression and IRBP content was detected with glucose, TNF-alpha and IL-1beta in cultures of Y79 human retinoblastoma cells. CONCLUSIONS/INTERPRETATION: Underproduction of IRBP is an early event in the human diabetic retina and is associated with retinal neurodegeneration. The mechanisms leading to this deficit deserve further investigation.


Subject(s)
Diabetic Retinopathy/genetics , Eye Proteins/genetics , Photoreceptor Cells, Vertebrate/metabolism , Retinol-Binding Proteins/genetics , Age of Onset , Aged , Apoptosis , Diabetic Retinopathy/metabolism , Diabetic Retinopathy/pathology , Down-Regulation , Eye Proteins/metabolism , Female , Gene Amplification , Genes, Retinoblastoma/genetics , Glial Fibrillary Acidic Protein/metabolism , Humans , Male , Microscopy, Confocal/methods , Middle Aged , RNA, Messenger/genetics , Retinal Neoplasms/genetics , Retinal Neoplasms/pathology , Retinal Perforations/genetics , Retinal Perforations/metabolism , Retinal Perforations/pathology , Retinoblastoma/genetics , Retinoblastoma/pathology , Retinol-Binding Proteins/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Vitreous Body/metabolism
12.
Diabetologia ; 50(6): 1294-303, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17380318

ABSTRACT

AIMS/HYPOTHESIS: The aim of this study was to compare the protein profile of vitreous fluid from diabetic patients with proliferative diabetic retinopathy (PDR) with that from non-diabetic patients with idiopathic macular holes (MH). The mRNA of proteins differentially produced was also assessed in the retinas from diabetic and non-diabetic donors. MATERIALS AND METHODS: Vitreous humour from type 1 diabetic patients with PDR (n = 8) and from non-diabetic patients with MH (n = 10) closely matched in terms of age were studied. The comparative proteomic analysis was performed using fluorescence-based difference gel electrophoresis (DIGE). Differentially produced proteins (abundance ratio >1.4, p < 0.05) were identified by mass spectrometry. Expressions of mRNA were measured by real-time RT-PCR in retinas from ten human eyes obtained at post-mortem (five eyes from diabetic subjects and five eyes from non-diabetic subjects). RESULTS: Eight proteins were highly produced in PDR patients in comparison with non-diabetic subjects: zinc-alpha(2)-glycoprotein (ZAG), apolipoprotein (apo) A1, apoH, fibrinogen A, and the complement factors C3, C4b, C9 and factor B). We found three proteins that were underproduced in PDR subjects: pigment epithelial derived factor (PEDF), interstitial retinol-binding protein (IRBP) and inter-alpha-trypsin inhibitor heavy chain (ITIH2). There was no overlap in the vitreous levels of the above-mentioned proteins between PDR patients and non-diabetic control subjects. The differential production of ZAG, C3, factor B, PEDF and IRBP was further confirmed by western blot, and was in agreement with mRNA levels detected in the retina. CONCLUSIONS/INTERPRETATION: Proteomic analysis by DIGE, which permits an accurate quantitative comparison, was useful in identifying new potential candidates involved in the pathogenesis of PDR.


Subject(s)
Diabetes Mellitus, Type 1/genetics , Diabetic Retinopathy/genetics , Eye Proteins/genetics , Vitreous Body/physiology , Cadaver , Diabetic Retinopathy/pathology , Electrophoresis , Eye Proteins/isolation & purification , Hemoglobins/genetics , Humans , Proteomics , Reference Values , Reverse Transcriptase Polymerase Chain Reaction , Vitreous Body/pathology
13.
Enzyme Microb Technol ; 29(1): 99-103, 2001 Jul 05.
Article in English | MEDLINE | ID: mdl-11427241

ABSTRACT

1Samples coming from biologic sources usually contain several contaminants that interfere seriously with Mass Spectrometry (MS) measurements. In this paper we report the application of MALDI-TOF MS to monitor recombinant protein expression and purification. The technique is based on the use of a C18 resin to clean and concentrate proteins in batch. The utility of this method is demonstrated for samples coming from different bacterial cultures expressing secreted and intracellular proteins ranging from 4 to 53 kDa. MALDI-TOF MS of peptide and proteins can be accomplished directly from complex bacterial cultures or from any purification step in a few minutes using the conventional stainless steel sample targets, allowing for a nearly instantaneous monitoring of the nature and integrity of recombinant expression products.

14.
Biochem J ; 355(Pt 1): 79-86, 2001 Apr 01.
Article in English | MEDLINE | ID: mdl-11256951

ABSTRACT

The mutant E134A 1,3-1,4-beta-glucanase from Bacillus licheniformis, in which the catalytic nucleophilic residue has been removed by mutation to alanine, has its hydrolytic activity rescued by exogenous formate in a concentration-dependent manner. A long-lived alpha-glycosyl formate is detected and identified by (1)H-NMR and matrix-assisted laser desorption ionization-time-of-flight-MS. The intermediate is kinetically competent, since it is, at least partially, enzymically hydrolysed, and able to act as a glycosyl donor in transglycosylation reactions. This transient compound represents a true covalent glycosyl-enzyme intermediate mimic of the proposed covalent intermediate in the reaction mechanism of retaining glycosidases.


Subject(s)
Formates/metabolism , Glycoside Hydrolases/metabolism , Bacillus/enzymology , Carbohydrate Sequence , Catalysis , Chromatography, High Pressure Liquid , Enzyme Activation , Glycoside Hydrolases/chemistry , Glycosylation , Kinetics , Magnetic Resonance Spectroscopy , Molecular Mimicry , Molecular Sequence Data , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
15.
J Biol Chem ; 276(15): 11683-90, 2001 Apr 13.
Article in English | MEDLINE | ID: mdl-11152676

ABSTRACT

A comparative study of the oxidative refolding for nine selected potato carboxypeptidase inhibitor (PCI) mutants was carried out using the disulfide quenching approach. The mutations were performed at the N- and C-terminal tails of PCI outside its disulfide stabilized central core. The differences between the refolding of wild type and mutant proteins were observed in the second phase of the refolding process, the reshuffling of disulfide bridges, although the first phase, nonspecific packing, was not greatly affected by the mutations. Point mutations at the C-tail or deletion of up to three C-terminal residues of PCI resulted in a lower efficiency of the reshuffling process. In the case of the mutants lacking five N-terminal or four or five C-terminal residues, no "native-like" form was observed after the refolding process. On the other hand, the double mutant G35P/P36G did not attain a native-like form either, although one slightly more stable species was observed after being submitted to refolding. The disulfide pairing of this species is different from that of the wtPCI native form. The differences between the refolding process of wild type and mutant forms are interpreted in the light of the new view of protein folding. The results of the present study support the hypothesis that the refolding of this small disulfide-rich protein, and others, is driven by noncovalent interactions at the reshuffling stage. It is also shown that the interactions established between the N- and C-tail residues and the core of PCI are important for the proper refolding of the protein.


Subject(s)
Mutation , Plant Proteins/metabolism , Protein Folding , Amino Acid Sequence , Circular Dichroism , Oxidation-Reduction , Plant Proteins/genetics , Protease Inhibitors , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
16.
J Agric Food Chem ; 48(9): 3795-800, 2000 Sep.
Article in English | MEDLINE | ID: mdl-10995273

ABSTRACT

A new plant endopeptidase was obtained from unripe fruits of Bromelia balansae Mez (Bromeliaceae). Crude extracts were partially purified by ethanol fractionation. This preparation (redissolved ethanol precipitate, REP) showed maximum activity at pH 8.8-9.2, was very stable even at high ionic strength values (no appreciable decrease in proteolytic activity could be detected after 24 h in 1 M sodium chloride solution at 37 degrees C), and exhibited high thermal stability (inactivation required heating for 60 min at 75 degrees C). Anion exchange chromatography allowed the isolation of a fraction purified to mass spectroscopy, SDS-PAGE, and IEF homogeneity, named balansain I, with pI = 5.45 and molecular mass = 23192 (mass spectrometry). The purification factor is low (2.9-fold), but the yield is high (48.3%), a common occurrence in plant organs with high proteolytic activity, where proteases represent the bulk of protein content of crude extracts. Balansain I exhibits a similar but narrower pH profile than that obtained for REP, with a maximum pH value approximately 9.0 and was inhibited by E-64 and other cysteine peptidases inhibitors but not affected by inhibitors of the other catalytic types of peptidases. The alanine and glutamine derivatives of N-alpha-carbobenzoxy-L-amino acid p-nitrophenyl esters was strongly preferred by the enzyme. The N-terminal sequence of balansain I showed a very high homology (85-90%) with other known Bromeliaceae endopeptidases.


Subject(s)
Endopeptidases/isolation & purification , Plants, Edible/chemistry , Amino Acid Sequence , Chromatography, Ion Exchange , Electrophoresis, Polyacrylamide Gel , Endopeptidases/chemistry , Isoelectric Focusing , Mass Spectrometry , Molecular Sequence Data , Sequence Homology, Amino Acid
17.
J Biol Chem ; 275(19): 14205-11, 2000 May 12.
Article in English | MEDLINE | ID: mdl-10799497

ABSTRACT

The unfolding and denaturation curves of potato carboxypeptidase inhibitor (PCI) were investigated using the technique of disulfide scrambling. In the presence of denaturant and thiol initiator, the native PCI denatures by shuffling its native disulfide bonds and converts to form a mixture of scrambled PCI that consists of 9 out of a possible 14 isomers. The denaturation curve is determined by the fraction of native PCI converted to scrambled isomers under increasing concentrations of denaturant. The concentration of guanidine thiocyanate, guanidine hydrochloride, and urea required to denature 50% of the native PCI was found to be 0.7, 1.45, and 8 m, respectively. The PCI unfolding curve was constructed through the analysis of structures of scrambled isomers that were denatured under increasing concentrations of denaturant. These results reveal the existence of structurally defined unfolding intermediates and a progressive expansion of the polypeptide chain. The yield of the beads-form isomer (Cys(8)-Cys(12), Cys(18)-Cys(24), and Cys(27)-Cys(34)) as a fraction of total denatured PCI was shown to be directly proportional to the strength of the denaturing condition. Furthermore, the PCI sequence was unable to fold quantitatively into a single native structure. Under physiological conditions, the scrambled isomers of PCI that constitute about 4% of the protein were in equilibrium with native PCI.


Subject(s)
Plant Proteins/metabolism , Amino Acid Sequence , Disulfides/chemistry , Molecular Sequence Data , Plant Proteins/chemistry , Protease Inhibitors , Protein Conformation , Protein Denaturation , Protein Folding , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Spectrometry, Fluorescence
18.
Eur J Pharmacol ; 394(1): 131-8, 2000 Apr 07.
Article in English | MEDLINE | ID: mdl-10771045

ABSTRACT

A single oral administration of 1-[4-(N-tert-butylcarbamoyl)-2-methoxybenzene sulfonyl]-5-ethoxy-3-spiro-[4-(2-morpholinoethoxy)cyclohexane]indo l-2 -one SR121463 (0.3-3 mg/kg), a vasopressin non-peptide V(2) receptor antagonist, to rats induced dose-dependent aquaresis which was accompanied by Na(+), K(+), aldosterone and arginine vasopressin excretion over 6 h after dosing. However, no solute excretion was observed over 24 h. As a result of aquaresis, hemoconcentration and increases in plasma angiotensin II and adenocorticotrophin hormone were seen with 3 mg/kg at 2 h after dosing. Chronic treatment with SR121463 (3 mg/kg/dayx28 days) induced a marked aquaresis associated with aldosterone and vasopressin excretion. After a week of treatment, urine volume and aldosterone excretion were reduced ( approximately 40%) and then stabilised, while urine vasopressin excretion remained almost constant throughout the study. There were no changes in arterial pressure, plasma osmolality, plasma sodium concentration, or in number and affinity of liver vasopressin V(1A) and kidney V(2) receptors 24 h after the last treatment. These results indicate that SR121463 is a potent aquaretic agent and might be useful for the chronic management of water-retaining diseases in humans.


Subject(s)
Antidiuretic Hormone Receptor Antagonists , Diuresis/drug effects , Morpholines/pharmacology , Spiro Compounds/pharmacology , Administration, Oral , Adrenocorticotropic Hormone/blood , Angiotensin II/blood , Animals , Dose-Response Relationship, Drug , Male , Rats , Rats, Sprague-Dawley
19.
FEBS Lett ; 472(1): 27-33, 2000 Apr 21.
Article in English | MEDLINE | ID: mdl-10781799

ABSTRACT

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) has been used to monitor hydrogen exchange on entire proteins. Two alternative methods have been used to carry out the hydrogen exchange studies, exchanging deuteron (H to D experiments) or proton (D to H experiments). In the former case, the use of a deuterated matrix has made possible to overcome back-exchange problems and attain reproducible results. The methods presented have been used to determine the slow exchange core of the potato carboxypeptidase inhibitor in different folding states, and to differentially compare the activation domain of human procarboxypeptidase A2 versus three site-directed mutants of different conformational stability. In this work, we show that by using MALDI-TOF MS to monitor hydrogen exchange in entire proteins, it is possible to rapidly check the folding state of a protein and characterize mutational effects on protein conformation and stability, while requiring minimal amounts of sample.


Subject(s)
Carboxypeptidases/chemistry , Enzyme Precursors/chemistry , Plant Proteins/chemistry , Carboxypeptidases/genetics , Carboxypeptidases A , Catalytic Domain , Deuterium , Enzyme Precursors/genetics , Humans , Hydrogen , Mutagenesis, Site-Directed , Plant Proteins/genetics , Protease Inhibitors , Protein Conformation , Protein Folding , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
20.
Eur J Biochem ; 267(5): 1502-9, 2000 Mar.
Article in English | MEDLINE | ID: mdl-10691989

ABSTRACT

The role of each residue of the potato carboxypeptidase inhibitor (PCI) C-terminal tail, in the interaction with carboxypeptidase A (CPA), has been studied by the analysis of two main kinds of site-directed mutants: the point substitution of each C-terminal residue by glycine and the sequential deletions of the C-terminal residues. The mutant PCI-CPA interactions have been characterized by the measurement of their inhibition constant, Ki, in several cases, by their kinetic association and dissociation constants determined by presteady-state analysis, and by computational approaches. The role of Pro36 appears to be mainly the restriction of the mobility of the PCI C-tail. In addition, and unexpectedly, both Gly35 and Pro36 have been found to be important for folding of the protein core. Val38 has the greatest enthalpic contribution to the PCI-CPA interaction. Although Tyr37 has a minor contribution to the binding energy of the whole inhibitor, it has been found to be essential for the interaction with the enzyme following the cleavage of the C-terminal Gly39 by CPA. The energetic contribution of the PCI secondary binding site has been evaluated to be about half of the total free energy of dissociation of the PCI-CPA complex.


Subject(s)
Carboxypeptidases/metabolism , Plant Proteins/metabolism , Amino Acid Sequence , Amino Acids/chemistry , Amino Acids/metabolism , Base Sequence , Binding Sites , Carboxypeptidases A , DNA Primers , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed , Plant Proteins/chemistry , Plant Proteins/genetics , Protease Inhibitors , Protein Binding , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
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