Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 39
Filter
1.
Ir J Med Sci ; 178(3): 297-9, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19495835

ABSTRACT

OBJECTIVE: Needlestick injuries are common within surgical practice and carry the risk of transmission of blood borne viruses. Key to reducing this risk is an accessible system of reporting and involvement of occupational health services. We aimed to identify surgeons' attitude and experience dealing with such injuries and identify why in many cases needlestick injuries go unreported. METHODS: 70 questionnaires were hand delivered to surgeons and trainees across 3 UK hospitals and a variety of surgical specialties. The number of injuries and reporting practice was identified. Surgeons were asked to identify from a list the reasons why they did not report their injuries and record importance on a 5-point scale (0-4). RESULTS: 52 surgeons and trainees replied (75%). 42 (81%) had suffered at least 1 needlestick injury with 4 (8%) reporting more than 20. 8 (19%) had reported all their injuries to occupational health with no significant difference in reporting between consultants and trainees (P = 0.2). 12 (23%) felt that reporting of injuries helped to reduce transmission rates. 18 (35%) said that a needlestick had caused them moderate or significant anxiety. The top reasons for not reporting were (0-4). (1) Process too time consuming (2.7), (2) transmission risk very low (2.6), (3) do not want to disrupt operating list (2.0), (4) post exposure prophylaxis ineffective (1.3). CONCLUSIONS: Most surgeons and trainees do not report all their needlestick injuries to occupational health despite many reporting injury related anxiety. The process is felt to take too long and the perceived risk of viral transmission is low.


Subject(s)
Attitude of Health Personnel , Needlestick Injuries/epidemiology , Occupational Exposure , Occupational Health , Surgery Department, Hospital/statistics & numerical data , Humans , Needlestick Injuries/prevention & control , Northern Ireland , Risk Factors , State Medicine , Surveys and Questionnaires , United Kingdom , Virus Diseases/prevention & control , Virus Diseases/transmission
2.
J Hand Surg Eur Vol ; 33(5): 670-1, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18606629

ABSTRACT

Sea urchin spine injuries are common. They usually cause local pain and swelling that subsides. Chronic granulation is rare. We report two cases of sea urchin granulomata involving finger metacarpophalangeal joints. Both resolved following surgery.


Subject(s)
Granuloma/diagnosis , Granuloma/etiology , Hand Injuries/etiology , Sea Urchins , Wounds, Stab/etiology , Wounds, Stab/pathology , Animals , Female , Granuloma/therapy , Hand Injuries/diagnosis , Hand Injuries/therapy , Humans , Male , Wounds, Stab/therapy , Young Adult
3.
Aliment Pharmacol Ther ; 16(1): 69-77, 2002 Jan.
Article in English | MEDLINE | ID: mdl-11856080

ABSTRACT

BACKGROUND: Sulfasalazine is accepted therapy for active ulcerative colitis, but side-effects and intolerance are common. Balsalazide is an azo-bonded pro-drug which also releases 5-aminosalicylic acid into the colon, but uses an inert carrier molecule. AIM: To compare the safety and efficacy of sul- fasalazine, 3 g, with balsalazide, 6.75 g, in the initial daily treatment of mild to moderate ulcerative colitis. METHODS: A randomized, multicentre, double-blind, parallel group study was performed, with a treatment duration of 8 weeks. Patients on previous maintenance treatment were excluded. The trial medication was the sole treatment for the colitis. Efficacy was assessed by patient diaries, symptom assessment, sigmoidoscopic appearance and histology. RESULTS: Fifty patients were recruited: 26 allocated to the balsalazide group and 24 to the sulfasalazine group. More patients withdrew due to adverse events in the sulfasalazine group (nine patients vs. one patient in the balsalazide group, P=0.004). Improvement occurred in both groups, with a tendency to a faster response with balsalazide. Of the patients taking balsalazide, 61% achieved clinical and sigmoidoscopic remission. CONCLUSIONS: Balsalazide, 6.75 g, is effective as the sole treatment for patients with mild to moderately active ulcerative colitis, with significantly fewer withdrawals due to side-effects than in a similar group of patients taking sulfasalazine, 3 g.


Subject(s)
Aminosalicylic Acids/pharmacology , Anti-Ulcer Agents/pharmacology , Colitis, Ulcerative/drug therapy , Gastrointestinal Agents/pharmacology , Sulfasalazine/pharmacology , Administration, Oral , Adult , Aged , Aged, 80 and over , Aminosalicylic Acids/administration & dosage , Aminosalicylic Acids/adverse effects , Anti-Ulcer Agents/administration & dosage , Anti-Ulcer Agents/adverse effects , Colitis, Ulcerative/pathology , Double-Blind Method , Female , Gastrointestinal Agents/administration & dosage , Gastrointestinal Agents/adverse effects , Humans , Male , Mesalamine , Middle Aged , Phenylhydrazines , Severity of Illness Index , Sigmoidoscopy , Sulfasalazine/administration & dosage , Sulfasalazine/adverse effects , Treatment Outcome
4.
J Gastroenterol Hepatol ; 14(10): 1034-40, 1999 Oct.
Article in English | MEDLINE | ID: mdl-10530501

ABSTRACT

BACKGROUND: The symptoms of the chronic cholestatic liver disease primary biliary cirrhosis (PBC), in particular fatigue and chronic pruritus, adversely affect quality of life and respond only poorly to treatment. Recent studies have suggested that oxidative stress may play a role in tissue damage in cholestatic liver disease and may contribute to symptoms, such as fatigue. We have, therefore, examined, in an open-label pilot study, the therapeutic effects of antioxidant medication on the biochemistry and symptomatology of PBC. METHODS: Patients were randomized to 3 months treatment with a compound antioxidant vitamin preparation (Bio-Antox), four tablets daily (n = 11, group 1), or the combination of Bio-Quinone Q10 (100 mg) with Bio-Antox (n = 13, group 2). Biochemical and symptomatic responses were assessed at 3 months. RESULTS: Significant improvement in both pruritus and fatigue was seen in the patients in group 2. Mean itch visual analogue score improved from 2.4 +/- 3.0 to 0.4 +/- 0.7 post therapy (P < 0.05) while mean night itch severity score improved from 2.6 +/- 1.9 to 1.3 +/- 0.7 (P < 0.05). Nine of 13 of these patients reported less fatigue, while 10/13 showed an improvement in at least one domain of their Fisk Fatigue Severity Score. No significant improvement in itch and only limited improvement in fatigue were seen in the patients in group 1. No change in biochemical parameters was seen in either group. CONCLUSIONS: Antioxidant therapy, as a combination of Bio-Antox and Bio-Quinone Q10, may improve the pruritus and fatigue of PBC. This combination of therapy should be investigated further in a double-blind, placebo-controlled trial.


Subject(s)
Antioxidants/therapeutic use , Liver Cirrhosis, Biliary/drug therapy , Ascorbic Acid/therapeutic use , Coenzymes , Drug Therapy, Combination , Fatigue/diagnosis , Fatigue/drug therapy , Female , Humans , Liver Cirrhosis, Biliary/diagnosis , Male , Methionine/therapeutic use , Middle Aged , Pilot Projects , Pruritus/diagnosis , Pruritus/drug therapy , Selenium/therapeutic use , Treatment Outcome , Ubiquinone/analogs & derivatives , Ubiquinone/therapeutic use , Vitamin E/therapeutic use , beta Carotene/therapeutic use
5.
J Mol Biol ; 254(5): 993-1005, 1995 Dec 15.
Article in English | MEDLINE | ID: mdl-7500366

ABSTRACT

The antibiotic fusidic acid and certain closely related steroidal compounds are potent competitive inhibitors of the type I variant of chloramphenicol acetyltransferase (CATI). In the absence of crystallographic data for CATI, the structural determinants of steroid binding were identified by (1) construction in vitro of genes encoding chimaeric enzymes containing segments of CATI and the related type III variant (CATIII) and (2) site-directed mutagenesis of the gene encoding CATIII, followed by kinetic characterisation of the substituted variants. Replacement of four residues of CATIII (Gln92, Asn146, Tyr168 and Ile172) by their equivalents from CATI yields an enzyme variant that is susceptible to competitive inhibition by fusidate with respect to chloramphenicol (Ki = 5.4 microM). The structure of the complex of fusidate and the Q92C/N146F/Y168F/I172V variant, determined at 2.2 A resolution by X-ray crystallography, reveals the inhibitor bound deep within the chloramphenicol binding site and in close proximity to the side-chain of His195, an essential catalytic residue. The aromatic side-chain of Phe146 provides a critical hydrophobic surface which interacts with non-polar substituents of the steroid. The remaining three substitutions act in concert both to maintain the appropriate orientation of Phe 146 and via additional interactions with the bound inhibitor. The substitution of Gln92 by Cys eliminates a critical hydrogen bond interaction which constrains a surface loop (residues 137 to 142) of wild-type CATIII which must move in order for fusidate to bind to the enzyme. Only two hydrogen bonds are observed in the CAT-fusidate complex, involving the 3-alpha-hydroxyl of the A-ring and both hydroxyl of Tyr25 and NE2 of His195, both of which are also involved in hydrogen bonds with substrate in the CATIII-chloramphenicol complex. In the acetyl transfer reaction catalysed by CAT, NE2, of His195 serves as a general base in the abstraction of a proton from the 3-hydroxyl of chloramphenicol as the first chemical step in catalysis. The structure of the CAT-inhibitor complex suggests that deprotonation of the 3-alpha-hydroxyl of bound fusidate by this mechanism could produce an oxyanion nucleophile analogous to that seen with chloramphenicol, but one which is incorrectly positioned to attack the thioester carbonyl of acetyl-CoA, accounting for the observed failure of CAT to acetylate fusidate.


Subject(s)
Chloramphenicol O-Acetyltransferase/metabolism , Fusidic Acid/metabolism , Steroids/metabolism , Amino Acid Sequence , Binding Sites , Chloramphenicol O-Acetyltransferase/genetics , Crystallization , Crystallography, X-Ray , Escherichia coli/genetics , Escherichia coli/metabolism , Molecular Sequence Data , Mutagenesis, Site-Directed , Recombinant Fusion Proteins/metabolism , Sequence Alignment
6.
Br J Clin Pract ; 48(5): 263-7, 1994.
Article in English | MEDLINE | ID: mdl-7917822

ABSTRACT

The value of the symptom pattern in achieving an accurate diagnosis in dyspeptic disease is still controversial. A number of investigators have used it to distinguish those patients who are at a high risk of serious disease (ulcer or cancer) from those who are not. Such findings have important implications for patient management, both in clinical and economic terms.


Subject(s)
Dyspepsia/diagnosis , Dyspepsia/etiology , Family Practice , Humans , Medical History Taking , Multicenter Studies as Topic , Risk Factors
9.
Gut ; 34(3): 422-7, 1993 Mar.
Article in English | MEDLINE | ID: mdl-8472994

ABSTRACT

Increasing demand for upper gastrointestinal endoscopy has forced many clinicians to reconsider the policy of seeing all patients in a specialist clinic before gastroscopy. The following are considered essential in setting up an open access gastroscopy service. (1) Assessment of the need by examination of waiting times for the outpatient clinic and the proportion of patients requiring upper gastrointestinal endoscopy, and consultation with colleagues in general practice. During the first 2 years of the service the average waiting time for a medical gastrointestinal outpatient appointment has fallen from over 120 days to 37 days in this area. (2) An adequately staffed and equipped gastrointestinal unit with well motivated nurses (the workload will increase) and sufficient clinical support to allocate patients to the next available gastroscopy list is vital. A safe mechanism for relaying information back to the GP (including histology reports) is essential otherwise medicolegal problems could arise. Open access gastroscopy now accounts for 29% of the total endoscopy workload in South Tees. (3) Close cooperation between medical and surgical gastroenterologists must be achieved to ensure a uniform approach to the provision of this service and equal distribution of the endoscopy workload. This will require close examination of the potential numbers and may necessitate appointment of a clinical assistant or additional consultant. Clinical assistants perform just over 50% of the open access gastroscopies in South Tees and the waiting time has been kept short (average 17 days). (4) A comprehensive request form with guidelines for GPs and a specific box identifying whether the GP requires a report and brief advice only or follow up at the discretion of the endoscopist (often a clinical assistant) is required. (5) Management must be involved in identifying adequate resources. (6) Methods of monitoring requests and outcome measures to ensure effective audit must be established.


Subject(s)
Endoscopy, Gastrointestinal , Health Services Accessibility/organization & administration , England , Family Practice , Humans , Interprofessional Relations , Medical Audit , Waiting Lists
10.
J Biol Chem ; 266(33): 22129-35, 1991 Nov 25.
Article in English | MEDLINE | ID: mdl-1939233

ABSTRACT

Monoclonal antibodies against Escherichia coli ribosomal proteins L9 and L10 were obtained and their specificity confirmed by Western blot analysis of total ribosomal protein. This was particularly important for the L9 antibody, since the immunizing antigen mixture contained predominantly L11. Each antibody recognized both 70 S ribosomes and 50 S subunits. Affinity-purified antibodies were tested for their effect on in vitro assays of ribosome function. Anti-L10 and anti-L9 inhibited poly(U)-directed polyphenylalanine synthesis almost completely. The antibodies had no effect on subunit association or dissociation and neither antibody inhibited peptidyltransferase activity. Both antibodies inhibited the binding of the ternary complex that consisted of aminoacyl-tRNA, guanylyl beta, gamma-methylenediphosphonate, and elongation factor Tu, and the binding of elongation factor G to the ribosome. The intact antibodies were more potent inhibitors than the Fab fragments. In contrast to the previously established location of L10 at the base of the L7/L12 stalk near the factor-binding site, the site of anti-L9 binding to 50 S subunits was shown by immune electron microscopy to be on the L1 lateral protuberance opposite the L7/L12 stalk as viewed in the quasisymmetric projection. The inhibition of factor binding by both antibodies, although consistent with established properties of L10 in the ribosome, suggests a long range effect on subunit structure that is triggered by the binding of anti-L9.


Subject(s)
Antibodies, Monoclonal , Escherichia coli/metabolism , Peptides , Ribosomal Proteins/metabolism , Ribosomes/metabolism , Animals , Female , Kinetics , Mice , Mice, Inbred BALB C/immunology , Microscopy, Electron , Models, Structural , Peptide Biosynthesis , Peptide Elongation Factor Tu/metabolism , Poly U , Ribosomal Protein L10 , Ribosomal Proteins/analysis , Ribosomal Proteins/immunology , Ribosomes/ultrastructure
11.
Am J Gastroenterol ; 86(11): 1614-8, 1991 Nov.
Article in English | MEDLINE | ID: mdl-1951239

ABSTRACT

Sixteen patients with Crohn's disease who had symptoms uncontrolled by high-dose steroids (n = 11) or symptoms invariably appearing on reduction or withdrawal of immunosuppressive therapy (n = 5) were treated with elemental diet. After 4 wk of dietary treatment, 10 patients were in remission and off all medication. Seven continued to be well without treatment for a minimum of 6 months, and four for at least 1 yr. No patient who subsequently relapsed had further steroid-refractory symptoms. Of the six patients failing to respond to elemental diet, four with steroid-refractory disease required early resective surgery for symptom relief, and two continued with steroid therapy, one in much reduced dosage. Elemental diet can bring about a sustained remission in many patients with Crohn's disease dependent on or refractory to corticosteroids, and reduce the need for surgical intervention.


Subject(s)
Crohn Disease/diet therapy , Food, Formulated , Prednisolone/therapeutic use , Adolescent , Adult , Aged , Azathioprine/therapeutic use , Crohn Disease/drug therapy , Drug Resistance , Drug Therapy, Combination , Female , Food Additives/administration & dosage , Humans , Male , Middle Aged , Organic Chemicals , Time Factors
12.
Dig Dis Sci ; 36(10): 1481-5, 1991 Oct.
Article in English | MEDLINE | ID: mdl-1914773

ABSTRACT

Rectosigmoid motor activity and postprandial breath hydrogen levels were monitored in eight healthy males under basal conditions and for 3 1/2 hr after a meal (beefburger and breadroll and ice cream incorporating 20 g lactulose). Within minutes of ingestion there was a significant increase in motility index (P less than 0.05) and also an initial temporary rise in breath hydrogen. A late increase in motor activity occurred in seven of eight subjects 123 +/- 19 min after the meal and was temporally related to the beginning of a second, much larger rise in breath hydrogen (r = 0.99; P less than 0.01). The close association between the timing of the rises in breath hydrogen and rectosigmoid motor activity would support the possibility that the latter may be generated by chemical or mechanical stimulation of the proximal colon.


Subject(s)
Colon/physiology , Eating/physiology , Gastrointestinal Motility/physiology , Rectum/physiology , Adult , Breath Tests , Humans , Hydrogen/analysis , Male , Reference Values
13.
Gut ; 31(4): 450-3, 1990 Apr.
Article in English | MEDLINE | ID: mdl-2338272

ABSTRACT

Ninety nine healthy young volunteers (58 men, 34 women, aged 17-27 years) answered a questionnaire concerning their bowel habit with particular reference to the effects of beverages. Twenty nine per cent (63% women) claimed that coffee induced a desire to defecate. The rectosigmoid motor responses to black, unsweetened coffee were then investigated by multiport manometry in 14 healthy-subjects (12 men, two women, eight of whom claimed coffee caused a desire to defecate (responders). Results revealed an increase in motility index within four minutes after ingestion of both regular and decaffeinated coffee (p less than 0.05) in the eight responders, but not in the six non-responders. The increase in rectosigmoid motility induced by coffee lasted at least 30 minutes. There was no increase in the motility index in any subject after a drink of hot water. These results suggest that drinking coffee can stimulate a motor response of the distal colon in some normal people.


Subject(s)
Coffee , Colon, Sigmoid/drug effects , Defecation/drug effects , Adolescent , Adult , Colon, Sigmoid/physiology , Female , Gastrointestinal Motility/drug effects , Humans , Male , Rectum/drug effects , Rectum/physiology
15.
Nucleic Acids Res ; 18(3): 477-85, 1990 Feb 11.
Article in English | MEDLINE | ID: mdl-1689824

ABSTRACT

The oligodeoxynucleotide dACCGCGGCTGCT, complementary to Escherichia coli small ribosomal subunit RNA residues 520-531, has been used to probe subunit conformation and to localize the sequence in the subunit. Conditions for binding of the cDNA to 30S subunits were optimized and specificity of the interaction was demonstrated by RNase H cleavage. Three kinds of terminal modification of this cDNA were used to allow its localization by immune electron microscopy. A solid phase support with 5'-dimethoxytrity-N6-delta 2-isopentenyl-adenosine linked to controlled pore glass was synthesized, and used to prepare oligomer with an added 3'-terminal residue of isopentenyl adenosine. cDNA with a 5' primary amine substituent was modified with 1-fluoro-2,4-dinitrobenzene to prepare 5'-dinitrophenyl oligonucleotide, and both modifications together gave doubly-derivatized probes. Immune electron microscopy with antibodies to dinitrophenol, isopentenyl adenosine, or both, was used to place the cDNA on 30S subunits. In each case the probe was placed at a single site at the junction of the head and body of the subunit, near the decoding site and the area in which elongation factor Tu is bound. It is proposed that this segment of ribosomal RNA functions in mRNA binding and orientation.


Subject(s)
Antibodies/metabolism , DNA/metabolism , Escherichia coli/ultrastructure , Nucleic Acid Conformation , Oligodeoxyribonucleotides/metabolism , RNA, Bacterial , RNA, Ribosomal, 16S , RNA, Ribosomal , Ribosomes/metabolism , Base Sequence , Binding Sites , DNA Probes , Dinitrophenols/immunology , Dinitrophenols/metabolism , Escherichia coli/genetics , Immunoassay , Isopentenyladenosine/immunology , Isopentenyladenosine/metabolism , Microscopy, Electron , Molecular Sequence Data , Oligodeoxyribonucleotides/chemical synthesis , RNA, Bacterial/genetics , RNA, Ribosomal/genetics , RNA, Ribosomal, 16S/genetics
16.
J Biol Chem ; 264(36): 21798-805, 1989 Dec 25.
Article in English | MEDLINE | ID: mdl-2689447

ABSTRACT

Colicin E3 is a ribonuclease that inactivates Escherichia coli ribosomes by cleaving the RNA of the small ribosomal subunit after nucleotide 1493. A series of oligodeoxynucleotides that complement 16 S RNA in the region of the colicin cleavage site has been synthesized, and their ability to form complexes with 30 S ribosomal subunits has been measured using a nitrocellulose filter-binding assay. The most efficiently bound probe, complementary to residues 1485-1496, was modified with antibody-recognizable derivatives at the 5'-end, the 3'-end, or both. Antibody-oligonucleotide-subunit complexes were then generated and examined by electron microscopy. Antibody binding was seen at the tip of the platform of the 30 S subunit. The complementary oligonucleotide and thus the site at which colcin E3 cleavage occurs is therefore in the same physical region as the 3'-end of the 16 S ribosomal RNA and its message-positioning "Shine-Dal-garno" sequence.


Subject(s)
Colicins/metabolism , RNA, Ribosomal/metabolism , Ribonucleases/metabolism , Antibodies , Antigen-Antibody Complex/analysis , Base Sequence , Escherichia coli/genetics , Microscopy, Electron , Molecular Sequence Data , Nucleic Acid Conformation , Oligonucleotide Probes , RNA, Ribosomal/genetics , RNA, Ribosomal/ultrastructure , RNA, Ribosomal, 16S/metabolism , RNA, Ribosomal, 23S/metabolism , Ribosomes/metabolism , Ribosomes/ultrastructure , Substrate Specificity
17.
Gut ; 30(5): 675-9, 1989 May.
Article in English | MEDLINE | ID: mdl-2567266

ABSTRACT

Olsalazine (2 g/day) and sulphasalazine (3 g/day) were compared in a double blind three centre trial in 37 patients presenting with first attack of distal colitis. Sigmoidoscopic appearances, rectal biopsies, and symptom and stool diary records were used to assess benefit and adverse effects. Both groups showed a similar decrease in stool frequency (p less than 0.001). The proportion of unformed stools was also decreased, but to a lesser extent (p less than 0.05) in those taking olsalazine (78% v 55%; p less than 0.001) compared with those taking sulphasalazine (72% v 28%; p less than 0.001). There was a diminution in the proportion of stools containing blood in both groups (olsalazine: 61% v 22%; p less than 0.001/sulphasalazine: 67% v 37%; p less than 0.001). Sigmoidoscopic and histological appearances and clinical activity improved significantly and to a similar extent in both groups. Intolerance was encountered in two patients on olsalazine and four on sulphasalazine; intolerance to sulphasalazine being even higher (five of seven patients) in a preliminary study using a dose of sulphasalazine releasing the same amount of 5-aminosalicylic acid as 2 g olsalazine. Olsalazine was at least as effective as sulphasalazine in the treatment of new patients with distal colitis, and in a dose releasing an equivalent amount of 5-aminosalicylic acid was better tolerated.


Subject(s)
Aminosalicylic Acids/therapeutic use , Colitis, Ulcerative/drug therapy , Sulfasalazine/therapeutic use , Adult , Aged , Clinical Trials as Topic , Double-Blind Method , Female , Humans , Male , Middle Aged , Multicenter Studies as Topic
18.
J Biol Chem ; 263(29): 15196-204, 1988 Oct 15.
Article in English | MEDLINE | ID: mdl-3049604

ABSTRACT

Messenger RNA orients on the small ribosomal subunit by base pairing with a complementary sequence in ribosomal RNA. We have positioned this ribosomal RNA segment and thus oriented the mRNA using a new technique--localization of an antibody-recognizable modified complementary oligodeoxynucleotide by electron microscopy. A synthetic oligodeoxynucleotide complementary to the message-positioning ribosomal RNA sequence was modified at either or both ends with different antigenic markers. Electron microscopy of subunit-oligodeoxynucleotide-antibody complexes allowed separate placement of each terminal marker of the oligodeoxynucleotide probe. The 5'-end of the complementary sequence contacts the subunit at the platform tip (rRNA nucleotide 1542). The message then extends along the interior side of the platform to the level of the fork of the cleft separating the platform from the subunit body, and displaced slightly to the convex side of the platform (rRNA nucleotide 1531). Based on our results and data from other laboratories, we propose a model for the positioning of messenger RNA on the 30 S subunit.


Subject(s)
RNA, Messenger/ultrastructure , Ribosomes/ultrastructure , Escherichia coli/metabolism , Escherichia coli/ultrastructure , Immunoglobulin G , Microscopy, Electron , Oligonucleotide Probes/chemical synthesis , RNA, Messenger/metabolism , Ribosomes/metabolism
19.
Biochemistry ; 27(13): 4687-95, 1988 Jun 28.
Article in English | MEDLINE | ID: mdl-3048388

ABSTRACT

The large RNA molecule within each ribosomal subunit is folded in a specific and compact form. The availability of specific 16S RNA sequences on the surface of the small ribosomal subunit has been probed by using complementary oligodeoxynucleotides. The hybridization of 8-15-nucleotide-long oligomers to their RNA complements within the subunit was quantitated by using a nitrocellulose membrane filter binding assay. The probes have been grouped into classes on the basis of sequence-specific binding ability under different conditions of ionic environment, incubation temperature, and subunit activation state [as defined by the ability to bind phenylalanyl-tRNA in response to a poly(uridylic acid) message]. Oligodeoxynucleotides complementary to nucleotides flanking 7-methylguanosine residue 527 and to the 3'-terminal sequence bound 30S subunits regardless of the activation state. Oligodeoxynucleotides that complement 16S ribosomal RNA residues 1-16, 60-70, 685-696, and 1330-1339 and the sequence adjacent to the colicin E3 cleavage site at residue 1502 all bound efficiently only to subunits in an inactivated conformation. Probes complementary to residues 1-11 and 446-455 bound only inactivated subunits, and then with low efficiency. Sequences complementary to nucleotides 6-16, 99-109, 1273-1281, and 1373-1383 bound 30S subunits poorly regardless of the activation state. With one exception, each probe was bound by native or heat-denatured 16S ribosomal RNA (as determined by size-exclusion chromatography). We conclude that complementary oligodeoxynucleotide binding efficiency is a sensitive measure of the availability of specific RNA sequences under easily definable conditions.


Subject(s)
Escherichia coli/ultrastructure , Nucleic Acid Conformation , Oligodeoxyribonucleotides , RNA, Ribosomal/ultrastructure , Ribosomes/ultrastructure , Base Sequence , Models, Molecular , RNA, Ribosomal, 16S/ultrastructure
SELECTION OF CITATIONS
SEARCH DETAIL
...