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1.
Nature ; 625(7994): 366-376, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38093015

ABSTRACT

Sexual reproduction of Toxoplasma gondii, confined to the felid gut, remains largely uncharted owing to ethical concerns regarding the use of cats as model organisms. Chromatin modifiers dictate the developmental fate of the parasite during its multistage life cycle, but their targeting to stage-specific cistromes is poorly described1,2. Here we found that the transcription factors AP2XII-1 and AP2XI-2 operate during the tachyzoite stage, a hallmark of acute toxoplasmosis, to silence genes necessary for merozoites, a developmental stage critical for subsequent sexual commitment and transmission to the next host, including humans. Their conditional and simultaneous depletion leads to a marked change in the transcriptional program, promoting a full transition from tachyzoites to merozoites. These in vitro-cultured pre-gametes have unique protein markers and undergo typical asexual endopolygenic division cycles. In tachyzoites, AP2XII-1 and AP2XI-2 bind DNA as heterodimers at merozoite promoters and recruit MORC and HDAC3 (ref. 1), thereby limiting chromatin accessibility and transcription. Consequently, the commitment to merogony stems from a profound epigenetic rewiring orchestrated by AP2XII-1 and AP2XI-2. Successful production of merozoites in vitro paves the way for future studies on Toxoplasma sexual development without the need for cat infections and holds promise for the development of therapies to prevent parasite transmission.


Subject(s)
Cats , In Vitro Techniques , Life Cycle Stages , Toxoplasma , Animals , Cats/parasitology , Humans , Chromatin/genetics , Chromatin/metabolism , Disease Models, Animal , Epigenesis, Genetic , In Vitro Techniques/methods , Life Cycle Stages/genetics , Merozoites/genetics , Nuclear Proteins/metabolism , Promoter Regions, Genetic/genetics , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , Toxoplasma/genetics , Toxoplasma/growth & development , Toxoplasma/physiology , Toxoplasmosis/genetics , Toxoplasmosis/parasitology , Toxoplasmosis/transmission , Transcription, Genetic
2.
bioRxiv ; 2023 Jan 17.
Article in English | MEDLINE | ID: mdl-36711883

ABSTRACT

Sexual reproduction of Toxoplasma gondii , which is restricted to the small intestine of felids, is sparsely documented, due to ethical concerns surrounding the use of cats as model organisms. Chromatin modifiers dictate the developmental fate of the parasite during its multistage life cycle, but their targeting to stage-specific cistromes is poorly described 1 . In this study, we found that transcription factors AP2XII-1 and AP2XI-2, expressed in tachyzoite stage that causes acute toxoplasmosis, can silence genes necessary for merozoites, a developmental stage critical for sexual commitment and transmission to the next host, including humans. Their conditional and simultaneous depletion leads to a drastic change in the transcriptional program, promoting a complete transition from tachyzoites to merozoites. Pre-gametes produced in vitro under these conditions are characterized by specific protein markers and undergo typical asexual endopolygenic division cycles. In tachyzoites, AP2XII-1 and AP2XI-2 bind DNA as heterodimers at merozoite promoters and recruit the epigenitors MORC and HDAC3 1 , which in turn restrict the accessibility of chromatin to the transcriptional machinery. Thus, the commitment to merogony stems from a profound epigenetic rewiring orchestrated by AP2XII-1 and AP2XI-2. This effective in vitro culture of merozoites paves the way to explore Toxoplasma sexual reproduction without the need to infect kittens and has potential for the development of therapeutics to block parasite transmission.

3.
Sci Transl Med ; 14(656): eabn3231, 2022 08 03.
Article in English | MEDLINE | ID: mdl-35921477

ABSTRACT

The Apicomplexa comprise a large phylum of single-celled, obligate intracellular protozoa that include Toxoplasma gondii, Plasmodium, and Cryptosporidium spp., which infect humans and animals and cause severe parasitic diseases. Available therapeutics against these diseases are limited by suboptimal efficacy and frequent side effects, as well as the emergence and spread of resistance. We use a drug repurposing strategy and identify altiratinib, a compound originally developed to treat glioblastoma, as a promising drug candidate with broad spectrum activity against apicomplexans. Altiratinib is parasiticidal and blocks the development of intracellular zoites in the nanomolar range and with a high selectivity index when used against T. gondii. We have identified TgPRP4K of T. gondii as the primary target of altiratinib using genetic target deconvolution, which highlighted key residues within the kinase catalytic site that conferred drug resistance when mutated. We have further elucidated the molecular basis of the inhibitory mechanism and species selectivity of altiratinib for TgPRP4K and for its Plasmodium falciparum counterpart, PfCLK3. Our data identified structural features critical for binding of the other PfCLK3 inhibitor, TCMDC-135051. Consistent with the splicing control activity of this kinase family, we have shown that altiratinib can cause global disruption of splicing, primarily through intron retention in both T. gondii and P. falciparum. Thus, our data establish parasitic PRP4K/CLK3 as a potential pan-apicomplexan target whose repertoire of inhibitors can be expanded by the addition of altiratinib.


Subject(s)
Cryptosporidiosis , Cryptosporidium , Malaria, Falciparum , Toxoplasma , Angiogenesis Inhibitors/therapeutic use , Animals , Humans , Malaria, Falciparum/drug therapy , Plasmodium falciparum , Protein Kinase Inhibitors/pharmacology , Spliceosomes , Toxoplasma/genetics
4.
Int J Mol Sci ; 23(11)2022 May 26.
Article in English | MEDLINE | ID: mdl-35682673

ABSTRACT

T. gondii is a eukaryotic parasite that has evolved a stage called tachyzoite which multiplies in host cells by producing two daughter cells internally. These nascent tachyzoites bud off their mother and repeat the division process until the expanding progenies escape to settle and multiply in other host cells. Over these intra- and extra-cellular phases, the tachyzoite maintains an essential apicobasal polarity that emerges through a unique bidirectional budding process of the elongating cells. This process requires the assembly of several molecular complexes that, at the nascent pole, encompass structural and myosin motor elements. To characterize a recently identified basal pole marker named BCC7 with respect to the posterior myosin J and myosin C motors, we used conventional biochemistry as well as advanced proteomic and in silico analysis in conjunction with live and super resolution microscopy of transgenic fluorescent tachyzoites. We document that BCC7 forms a ribbed ring below which myosin C motor entities distribute regularly. In addition, we identified-among 13 BCC7 putative partners-two novel and five known members of the inner membrane complex (IMC) family which ends at the apical side of the ring. Therefore, BCC7 could assist the stabilization of the IMC plaques and contribute to the parasite biomechanical properties.


Subject(s)
Toxoplasma , Cell Division , Myosins/metabolism , Proteomics , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , Toxoplasma/metabolism
5.
BMC Biol ; 19(1): 25, 2021 02 09.
Article in English | MEDLINE | ID: mdl-33557824

ABSTRACT

BACKGROUND: Biomarker discovery remains a major challenge for predictive medicine, in particular, in the context of chronic diseases. This is true for the widespread protozoan Toxoplasma gondii which establishes long-lasting parasitism in metazoans, humans included. This microbe successively unfolds distinct genetic programs that direct the transition from high to low replicative potential inside host cells. As a slow-replicating cell, the T. gondii bradyzoite developmental stage persists enclosed in a cyst compartment within tissues including the nervous system, being held by a sustained immune equilibrium which accounts for the prolonged clinically silent phase of parasitism. Serological surveys indicate that nearly one third of the human population has been exposed to T. gondii and possibly host bradyzoites. Because any disruption of the immune balance drives the reverse transition from bradyzoite to fast replicating tachyzoite and uncontrolled growth of the latter, these people are at risk for life-threatening disease. While serological tests for discriminating recent from past infection are available, there is yet no immunogenic biomarker used in the serological test to allow ascertaining the presence of persistent bradyzoites. RESULTS: Capitalizing on genetically engineered parasites induced to produce mature bradyzoites in vitro, we have identified the BCLA/MAG2 protein being restricted to the bradyzoite and the cyst envelope. Using laboratory mice as relevant T. gondii host models, we demonstrated that BCLA/MAG2 drives the generation of antibodies that recognize bradyzoite and the enveloping cyst structure. We have designed an ELISA assay based on a bacterially produced BCLA recombinant polypeptide, which was validated using a large collection of sera from mice of different genetic backgrounds and infected with bcla+ or bcla-null cystogenic and non-cystogenic T. gondii strains. To refine the design of the ELISA assay, we applied high-resolution BCLA epitope mapping and identified a specific combination of peptides and accordingly set up a selective and sensitive ELISA assay which allowed the detection of anti-BCLA/MAG2 antibodies in the sera of human patients with various forms of toxoplasmosis. CONCLUSIONS: We brought proof of principle that anti-BCLA/MAG2 antibodies serve as specific and sensitive serological markers in the perspective of a combinatorial strategy for detection of persistent T. gondii parasitism.


Subject(s)
Brain/parasitology , Toxoplasma/physiology , Toxoplasmosis/diagnosis , Animals , Biomarkers/metabolism , Chronic Disease , Mice , Serologic Tests , Toxoplasmosis/parasitology , Toxoplasmosis/pathology
6.
Nat Microbiol ; 5(4): 570-583, 2020 04.
Article in English | MEDLINE | ID: mdl-32094587

ABSTRACT

Toxoplasma gondii has a complex life cycle that is typified by asexual development that takes place in vertebrates, and sexual reproduction, which occurs exclusively in felids and is therefore less studied. The developmental transitions rely on changes in the patterns of gene expression, and recent studies have assigned roles for chromatin shapers, including histone modifications, in establishing specific epigenetic programs for each given stage. Here, we identified the T. gondii microrchidia (MORC) protein as an upstream transcriptional repressor of sexual commitment. MORC, in a complex with Apetala 2 (AP2) transcription factors, was shown to recruit the histone deacetylase HDAC3, thereby impeding the accessibility of chromatin at the genes that are exclusively expressed during sexual stages. We found that MORC-depleted cells underwent marked transcriptional changes, resulting in the expression of a specific repertoire of genes, and revealing a shift from asexual proliferation to sexual differentiation. MORC acts as a master regulator that directs the hierarchical expression of secondary AP2 transcription factors, and these transcription factors potentially contribute to the unidirectionality of the life cycle. Thus, MORC plays a cardinal role in the T. gondii life cycle, and its conditional depletion offers a method to study the sexual development of the parasite in vitro, and is proposed as an alternative to the requirement of T. gondii infections in cats.


Subject(s)
Adenosine Triphosphatases/genetics , Histone Deacetylases/genetics , Histones/metabolism , Protozoan Proteins/genetics , Toxoplasma/genetics , Transcription Factors/genetics , Transcription, Genetic , Adenosine Triphosphatases/chemistry , Adenosine Triphosphatases/metabolism , Animals , Cats , Chromatin , Fibroblasts/parasitology , Histone Code , Histone Deacetylases/chemistry , Histone Deacetylases/metabolism , Histones/genetics , Humans , Life Cycle Stages/genetics , Models, Molecular , Primary Cell Culture , Protein Binding , Protein Processing, Post-Translational , Protein Structure, Secondary , Protozoan Proteins/chemistry , Protozoan Proteins/metabolism , Toxoplasma/growth & development , Toxoplasma/metabolism , Transcription Factors/chemistry , Transcription Factors/metabolism
7.
Nat Microbiol ; 4(7): 1208-1220, 2019 07.
Article in English | MEDLINE | ID: mdl-31036909

ABSTRACT

The protozoan parasite Toxoplasma gondii has co-evolved with its homeothermic hosts (humans included) strategies that drive its quasi-asymptomatic persistence in hosts, hence optimizing the chance of transmission to new hosts. Persistence, which starts with a small subset of parasites that escape host immune killing and colonize the so-called immune privileged tissues where they differentiate into a low replicating stage, is driven by the interleukin 12 (IL-12)-interferon-γ (IFN-γ) axis. Recent characterization of a family of Toxoplasma effectors that are delivered into the host cell, in which they rewire the host cell gene expression, has allowed the identification of regulators of the IL-12-IFN-γ axis, including repressors. We now report on the dense granule-resident effector, called TEEGR (Toxoplasma E2F4-associated EZH2-inducing gene regulator) that counteracts the nuclear factor-κB (NF-κB) signalling pathway. Once exported into the host cell, TEEGR ends up in the nucleus where it not only complexes with the E2F3 and E2F4 host transcription factors to induce gene expression, but also promotes shaping of a non-permissive chromatin through its capacity to switch on EZH2. Remarkably, EZH2 fosters the epigenetic silencing of a subset of NF-κB-regulated cytokines, thereby strongly contributing to the host immune equilibrium that influences the host immune response and promotes parasite persistence in mice.


Subject(s)
Enhancer of Zeste Homolog 2 Protein/metabolism , NF-kappa B/metabolism , Protozoan Proteins/metabolism , Signal Transduction/genetics , Toxoplasma/physiology , Animals , Cell Line , Cell Nucleus/metabolism , Cytokines/metabolism , E2F Transcription Factors/genetics , E2F Transcription Factors/metabolism , Enhancer of Zeste Homolog 2 Protein/genetics , Gene Expression , Gene Expression Regulation , Humans , Mice , Mice, Inbred BALB C , Mutation , Parasite Load , Promoter Regions, Genetic , Protein Multimerization , Protozoan Proteins/genetics , Toxoplasma/genetics , Toxoplasma/immunology , Toxoplasmosis/metabolism , Toxoplasmosis/parasitology
8.
Elife ; 62017 11 04.
Article in English | MEDLINE | ID: mdl-29101771

ABSTRACT

An unusual genome architecture characterizes the two related human parasitic pathogens Plasmodium falciparum and Toxoplasma gondii. A major fraction of the bulk parasite genome is packaged as transcriptionally permissive euchromatin with few loci embedded in silenced heterochromatin. Primary chromatin shapers include histone modifications at the nucleosome lateral surface close to the DNA but their mode of action remains unclear. We now identify versatile modifications at Lys31 within the globular domain of histone H4 that crucially determine genome organization and expression in Apicomplexa parasites. H4K31 acetylation at the promoter correlates with, and perhaps directly regulates, gene expression in both parasites. By contrast, monomethylated H4K31 is enriched in the core body of T. gondii active genes but inversely correlates with transcription, whereas it is unexpectedly enriched at transcriptionally inactive pericentromeric heterochromatin in P. falciparum, a region devoid of the characteristic H3K9me3 histone mark and its downstream effector HP1.


Subject(s)
Epigenesis, Genetic , Heterochromatin/metabolism , Histones/metabolism , Plasmodium falciparum/physiology , Protein Processing, Post-Translational , Toxoplasma/physiology , Acetylation , Animals , Plasmodium falciparum/genetics , Toxoplasma/genetics
9.
Infect Immun ; 83(6): 2475-86, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25847964

ABSTRACT

The apical membrane antigen 1 (AMA1) protein was believed to be essential for the perpetuation of two Apicomplexa parasite genera, Plasmodium and Toxoplasma, until we genetically engineered viable parasites lacking AMA1. The reduction in invasiveness of the Toxoplasma gondii RH-AMA1 knockout (RH-AMA1(KO)) tachyzoite population, in vitro, raised key questions about the outcome associated with these tachyzoites once inoculated in the peritoneal cavity of mice. In this study, we used AMNIS technology to simultaneously quantify and image the parasitic process driven by AMA1(KO) tachyzoites. We report their ability to colonize and multiply in mesothelial cells and in both resident and recruited leukocytes. While the RH-AMA1(KO) population amplification is rapidly lethal in immunocompromised mice, it is controlled in immunocompetent hosts, where immune cells in combination sense parasites and secrete proinflammatory cytokines. This innate response further leads to a long-lasting status immunoprotective against a secondary challenge by high inocula of the homologous type I or a distinct type II T. gondii genotypes. While AMA1 is definitively not an essential protein for tachyzoite entry and multiplication in host cells, it clearly assists the expansion of parasite population in vivo.


Subject(s)
Antigens, Protozoan/metabolism , Immunity, Innate/physiology , Protozoan Vaccines/immunology , Toxoplasma/genetics , Toxoplasma/physiology , Toxoplasmosis, Animal/prevention & control , Animals , Antibodies, Protozoan , Antigens, Protozoan/genetics , Female , Genes , Immunocompromised Host , Macrophages, Peritoneal , Mice , Mice, Inbred Strains , Toxoplasma/pathogenicity , Vaccines, Attenuated , Virulence
10.
Cell Rep ; 6(5): 928-37, 2014 Mar 13.
Article in English | MEDLINE | ID: mdl-24582962

ABSTRACT

microRNAs were recently found to be regulators of the host response to infection by apicomplexan parasites. In this study, we identified two immunomodulatory microRNAs, miR-146a and miR-155, that were coinduced in the brains of mice challenged with Toxoplasma in a strain-specific manner. These microRNAs define a characteristic fingerprint for infection by type II strains, which are the most prevalent cause of human toxoplasmosis in Europe and North America. Using forward genetics, we showed that strain-specific differences in miR-146a modulation were in part mediated by the rhoptry kinase, ROP16. Remarkably, we found that miR-146a deficiency led to better control of parasite burden in the gut and most likely of early parasite dissemination in the brain tissue, resulting in the long-term survival of mice.


Subject(s)
Brain/parasitology , MicroRNAs/genetics , Toxoplasma/physiology , Toxoplasmosis/genetics , Animals , Cell Fractionation , Female , Fibroblasts/parasitology , Humans , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Signal Transduction , Tissue Array Analysis , Transfection
11.
PLoS Pathog ; 10(1): e1003830, 2014 Jan.
Article in English | MEDLINE | ID: mdl-24391497

ABSTRACT

Histone acetylation has been linked to developmental changes in gene expression and is a validated drug target of apicomplexan parasites, but little is known about the roles of individual histone modifying enzymes and how they are recruited to target genes. The protozoan parasite Toxoplasma gondii (phylum Apicomplexa) is unusual among invertebrates in possessing two GCN5-family lysine acetyltransferases (KATs). While GCN5a is required for gene expression in response to alkaline stress, this KAT is dispensable for parasite proliferation in normal culture conditions. In contrast, GCN5b cannot be disrupted, suggesting it is essential for Toxoplasma viability. To further explore the function of GCN5b, we generated clonal parasites expressing an inducible HA-tagged dominant-negative form of GCN5b containing a point mutation that ablates enzymatic activity (E703G). Stabilization of this dominant-negative GCN5b was mediated through ligand-binding to a destabilization domain (dd) fused to the protein. Induced accumulation of the ddHAGCN5b(E703G) protein led to a rapid arrest in parasite replication. Growth arrest was accompanied by a decrease in histone H3 acetylation at specific lysine residues as well as reduced expression of GCN5b target genes in GCN5b(E703G) parasites, which were identified using chromatin immunoprecipitation coupled with microarray hybridization (ChIP-chip). Proteomics studies revealed that GCN5b interacts with AP2-domain proteins, apicomplexan plant-like transcription factors, as well as a "core complex" that includes the co-activator ADA2-A, TFIID subunits, LEO1 polymerase-associated factor (Paf1) subunit, and RRM proteins. The dominant-negative phenotype of ddHAGCN5b(E703G) parasites, considered with the proteomics and ChIP-chip data, indicate that GCN5b plays a central role in transcriptional and chromatin remodeling complexes. We conclude that GCN5b has a non-redundant and indispensable role in regulating gene expression required during the Toxoplasma lytic cycle.


Subject(s)
Cell Proliferation/physiology , Gene Expression Regulation/physiology , Histone Acetyltransferases/metabolism , Protozoan Proteins/metabolism , Toxoplasma/metabolism , Transcription Factors/metabolism , Acetylation , Amino Acid Substitution , Enzyme Stability/physiology , Histone Acetyltransferases/genetics , Histones/genetics , Histones/metabolism , Humans , Lysine/genetics , Lysine/metabolism , Mutation, Missense , Proteomics/methods , Protozoan Proteins/genetics , Toxoplasma/genetics , Transcription Factors/genetics , Transcription, Genetic/physiology
12.
Trends Parasitol ; 27(11): 481-6, 2011 Nov.
Article in English | MEDLINE | ID: mdl-21840260

ABSTRACT

RNA silencing plays a major role in innate antiviral and antibacterial defenses in plants, insects, and animals through the action of microRNAs (miRNAs). miRNAs can act in favor of the microorganism, either when it is pathogen-encoded or when the microorganism subverts host miRNAs to its benefit. Recent data point to the possibility that apicomplexan parasites have developed tactics to interfere with host miRNA populations in a parasite-specific manner, thereby identifying the RNA-silencing pathway as a new means to reshape their cellular environment. This review highlights the current understanding and new insights concerning the mechanisms that could be involved and the potential roles of the host microRNome (miRNome) in apicomplexan infection.


Subject(s)
Apicomplexa/physiology , Host-Pathogen Interactions/genetics , MicroRNAs/genetics , Protozoan Infections/parasitology , Protozoan Proteins/metabolism , Animals , Apicomplexa/genetics , Gene Expression , Humans , Plants/genetics , Plants/parasitology , RNA Interference
13.
PLoS Pathog ; 6(5): e1000920, 2010 May 27.
Article in English | MEDLINE | ID: mdl-20523899

ABSTRACT

In RNA silencing, small RNAs produced by the RNase-III Dicer guide Argonaute-like proteins as part of RNA-induced silencing complexes (RISC) to regulate gene expression transcriptionally or post-transcriptionally. Here, we have characterized the RNA silencing machinery and exhaustive small RNAome of Toxoplasma gondii, member of the Apicomplexa, a phylum of animal- and human-infecting parasites that cause extensive health and economic damages to human populations worldwide. Remarkably, the small RNA-generating machinery of Toxoplasma is phylogenetically and functionally related to that of plants and fungi, and accounts for an exceptionally diverse array of small RNAs. This array includes conspicuous populations of repeat-associated small interfering RNA (siRNA), which, as in plants, likely generate and maintain heterochromatin at DNA repeats and satellites. Toxoplasma small RNAs also include many microRNAs with clear metazoan-like features whose accumulation is sometimes extremely high and dynamic, an unexpected finding given that Toxoplasma is a unicellular protist. Both plant-like heterochromatic small RNAs and metazoan-like microRNAs bind to a single Argonaute protein, Tg-AGO. Toxoplasma miRNAs co-sediment with polyribosomes, and thus, are likely to act as translational regulators, consistent with the lack of catalytic residues in Tg-AGO. Mass spectrometric analyses of the Tg-AGO protein complex revealed a common set of virtually all known RISC components so far characterized in human and Drosophila, as well as novel proteins involved in RNA metabolism. In agreement with its loading with heterochromatic small RNAs, Tg-AGO also associates substoichiometrically with components of known chromatin-repressing complexes. Thus, a puzzling patchwork of silencing processor and effector proteins from plant, fungal and metazoan origin accounts for the production and action of an unsuspected variety of small RNAs in the single-cell parasite Toxoplasma and possibly in other apicomplexans. This study establishes Toxoplasma as a unique model system for studying the evolution and molecular mechanisms of RNA silencing among eukaryotes.


Subject(s)
Evolution, Molecular , RNA Interference/physiology , RNA, Small Interfering/genetics , RNA-Binding Proteins/genetics , Toxoplasma/genetics , Toxoplasmosis/parasitology , Cells, Cultured , Fibroblasts/cytology , Fibroblasts/parasitology , Gene Expression Regulation , Genome, Protozoan , Humans , MicroRNAs/genetics , Phylogeny , Proteomics , Toxoplasma/growth & development
14.
Cell Microbiol ; 12(4): 413-23, 2010 Apr 01.
Article in English | MEDLINE | ID: mdl-20109158

ABSTRACT

The apicomplexan Toxoplasma gondii completes its life cycle by successive processes of parasite differentiation that rely on a tight control of gene expression to ensure appropriate protein profiles on time. During the last 5 years, several groups have pioneered this field of investigation, suggesting that epigenetics could play an important role in the control of parasite gene expression. Histone modifications serve as an effective way to regulate gene transcription but they do not operate alone; rather, they act in concert with other putative epigenetic information carriers (histone variants, small RNAs) and DNA sequence-specific transcription factors to modulate the higher-order structure of the chromatin fibre and govern the on-time recruitment of the transcriptional machinery to specific genes. Regarding the 'histone code' hypothesis, the parasite is endowed with a rich repertoire of histone-modifying enzymes catalysing site-selective modifications, which are subsequently interpreted by effector proteins that recognize specific covalent marks. Still, several peculiarities seem unique to T. gondii. This review is a synthesis of the current knowledge of how epigenetics contribute to the control of gene expression in T. gondii and, likely, other Apicomplexa.


Subject(s)
Chromatin/metabolism , Epigenesis, Genetic , Gene Expression Regulation , Toxoplasma/genetics , Animals , Histones/metabolism , Protein Processing, Post-Translational , Toxoplasma/metabolism
15.
J Struct Biol ; 169(1): 45-53, 2010 Jan.
Article in English | MEDLINE | ID: mdl-19723583

ABSTRACT

The NADPH oxidase complex is involved in the destruction of phagocytosed pathogens through the production of reactive oxygen species. This activatable complex consists of a membranous heterodimeric flavocytochrome b, a small G-protein Rac1/Rac2 and cytosolic factors, p47(phox), p67(phox) and p40(phox). p67(phox), due to its modular structure, is the NADPH oxidase component for which global structure information is most scarce despite its mandatory role in activation and its central position in the whole complex organization. Indeed, p67(phox) is the only factor establishing interaction with all others. In this study, we report the SAXS analysis of p67(phox). Our data reveals that p67(phox) behaves as a multidomain protein with semi-flexible linkers. On the one hand, it appears to be a very elongated molecule with its various domains organized as beads on a string. Linkers are predicted to be partially or mainly unstructured and features of our experimental data do point towards inter-domain flexibility. On the other hand, our work also suggests that the protein is not as extended as unstructured linkers could allow, thereby implying the existence of intra-molecular interactions within p67(phox). We suggest that the dual character of p67(phox) conformation in solution is central to ensure the numerous interactions to be accommodated.


Subject(s)
Phosphoproteins/chemistry , Scattering, Small Angle , X-Ray Diffraction , Computational Biology , Protein Structure, Tertiary
16.
Int J Parasitol ; 39(1): 81-90, 2009 Jan.
Article in English | MEDLINE | ID: mdl-18761012

ABSTRACT

SUMOylation, the reversible covalent attachment of small ubiquitin-like modifier (SUMO) peptides has emerged as an important regulator of target protein function. Here we show, by characterization of the Toxoplasma gondii SUMO pathway, that the SUMO conjugation system operates in apicomplexan parasites. A gene encoding the SUMO tag was discovered as were genes encoding the various enzymes required for SUMO processing, ligation and release. Various SUMO conjugates were immuno-detected and by means of a global proteomic-based approach, we identified several T. gondii SUMOylated proteins that reveal many diverse cellular processes in which the modification plays a role. More specifically, SUMO conjugates were seen at the tachyzoite surface in response to signaling generated by host cell contact at the time of invasion. Also, under tissue culture conditions that stimulate bradyzoite differentiation (alkaline pH), we observed the conjugates at the parasitophorous vacuole membrane. The labeling was also at the surface of the mature cysts isolated from parasite-infected mouse brain. Overall, the SUMO conjugation system appears to be a complex and functionally heterogeneous pathway for protein modification in T. gondii with initial data indicating that it is likely to play a putative role in host cell invasion and cyst genesis.


Subject(s)
Small Ubiquitin-Related Modifier Proteins/metabolism , Toxoplasma/metabolism , Animals , Host-Parasite Interactions/genetics , Mice , Protein Processing, Post-Translational , Proteomics , Small Ubiquitin-Related Modifier Proteins/genetics , Toxoplasma/genetics , Ubiquitin-Conjugating Enzymes/genetics , Ubiquitin-Conjugating Enzymes/metabolism
17.
Mol Cell Biol ; 27(16): 5711-24, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17562855

ABSTRACT

Posttranslational histone modifications modulate chromatin-templated processes in various biological systems. H4K20 methylation is considered to have an evolutionarily ancient role in DNA repair and genome integrity, while its function in heterochromatin function and gene expression is thought to have arisen later during evolution. Here, we identify and characterize H4K20 methylases of the Set8 family in Plasmodium and Toxoplasma, two medically important members of the protozoan phylum Apicomplexa. Remarkably, parasite Set8-related proteins display H4K20 mono-, di-, and trimethylase activities, in striking contrast to the monomethylase-restricted human Set8. Structurally, few residues forming the substrate-specific channel dictate enzyme methylation multiplicity. These enzymes are cell cycle regulated and focally enriched at pericentric and telomeric heterochromatin in both parasites. Collectively, our findings provide new insights into the evolution of Set8-mediated biochemical pathways, suggesting that the heterochromatic function of the marker is not restricted to metazoans. Thus, these lower eukaryotes have developed a diverse panel of biological stages through their high capacity to differentiate, and epigenetics only begins to emerge as a strong determinant of their biology.


Subject(s)
Gene Silencing , Genome, Protozoan/genetics , Heterochromatin/metabolism , Histones/metabolism , Lysine/metabolism , Protozoan Proteins/metabolism , Toxoplasma/genetics , Amino Acid Sequence , Amino Acids/genetics , Animals , Catalysis , Catalytic Domain , Cell Cycle , Heterochromatin/genetics , Histone-Lysine N-Methyltransferase/chemistry , Histone-Lysine N-Methyltransferase/metabolism , Humans , Methylation , Models, Molecular , Molecular Sequence Data , Mutation/genetics , Parasites/cytology , Parasites/enzymology , Parasites/genetics , Phylogeny , Protozoan Proteins/chemistry , Protozoan Proteins/genetics , Toxoplasma/cytology , Toxoplasma/enzymology
18.
Biochim Biophys Acta ; 1768(6): 1567-73, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17467658

ABSTRACT

We have used analytical ultracentrifugation to explore the oligomeric states of AcrB and CusA in micellar solution of detergent. These two proteins belong to the resistance, nodulation and cell division (RND) family of efflux proteins that are involved in multiple drug and heavy metal resistance. Only the structure of AcrB has been determined so far. Although functional RND proteins should assemble as trimers as AcrB does, both AcrB and CusA form a mixture of quaternary structures (from monomer to heavy oligomer) in detergent solution. The distribution of the oligomeric states was studied as a function of different parameters: nature and concentration of the detergent, ionic strength, pH, protein concentration. This pseudo-heterogeneity does not hamper the crystallization of AcrB as a homotrimer.


Subject(s)
Detergents/chemistry , Escherichia coli Proteins/chemistry , Membrane Transport Proteins/chemistry , Micelles , Multidrug Resistance-Associated Proteins/chemistry , Crystallization , Hydrogen-Ion Concentration , Protein Binding , Protein Conformation , Ultracentrifugation
19.
Biochemistry ; 45(23): 7185-93, 2006 Jun 13.
Article in English | MEDLINE | ID: mdl-16752909

ABSTRACT

In response to microbial infection, neutrophiles promote the assembly of the NADPH oxidase complex in order to produce superoxide anions. This reaction is activated by the association of cytosolic factors, p47(phox), p67(phox), p40(phox), and a small G protein Rac with the membranous heterodimeric flavocytochrome b(558), composed of gp91(phox) and p22(phox). In the activation process, p47(phox) plays a central role as the target of phosphorylations and as a scaffolding protein conducting the translocation and assembly of cytosolic factors onto the membranous components. The PX and tandem SH3s of p47(phox) have been highlighted as being key determinants for the interaction with membrane lipids and the p22(phox) component, respectively. In the resting state, the two corresponding interfaces are thought to be masked allowing its cytoplasmic localization. However, the resting state modular organization of p47(phox) and its autoinhibition mode are still not fully understood despite available structural information on separate modules. More precisely, it raises the question of the mutual arrangement of the PX domain and the tandem SH3 domains in the resting state. To address this question, we have engaged a study of the entire p47(phox) molecule in solution using small-angle X-ray scattering. Despite internal autoinhibitory interactions, p47(phox) adopts an extended conformation. First insights about the domain arrangement in whole p47(phox) can be derived. Our data allow to discard the usual representation of a globular and compact autoinhibited resting state.


Subject(s)
NADPH Oxidases/chemistry , Amino Acid Sequence , Models, Molecular , Molecular Sequence Data , NADPH Oxidases/genetics , NADPH Oxidases/isolation & purification , NADPH Oxidases/metabolism , Phosphorylation , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Scattering, Radiation , Sequence Homology, Amino Acid , X-Rays
20.
Biochemistry ; 45(17): 5557-66, 2006 May 02.
Article in English | MEDLINE | ID: mdl-16634637

ABSTRACT

The copH gene is one of the 19 open reading frames (ORFs) found in the cop cluster borne by the large plasmid pMol30 in Cupriavidus metallidurans CH34. The entire cluster is involved in detoxification of copper from the cytoplasm as well as from the periplasm. The function of the corresponding protein, CopH, is not yet clear, but it seems to be involved in the late response phase. We have cloned copH and overproduced and purified the corresponding protein. CopH is rather unique as only one paralog can be found in the databases. It is a dimeric protein with a molecular mass of 13 200 Da per subunit and located in the periplasm. The metal binding properties of CopH were examined by using a series of techniques such as UV-visible spectroscopy, circular dichroism (CD), electron paramagnetic resonance (EPR), surface plasmon resonance (SPR), mass spectrometry, and nuclear magnetic resonance (NMR). All together, the corresponding data are consistent with a dimeric protein containing one metal-binding site per subunit. These sites have a high affinity for Cu(II) but can also bind zinc or nickel. CopH does not contain any cysteines or methionines but contains two histidines. EPR and UV-visible features are consistent with the presence of Cu(II) type 2 centers in a nitrogen ligand field. SPR data confirm the involvement of the histidine residues in copper binding. CD and NMR data reveal that CopH is partially unfolded.


Subject(s)
Burkholderiaceae/chemistry , Carrier Proteins/isolation & purification , Copper/metabolism , Amino Acid Sequence , Circular Dichroism , Cloning, Molecular , Dimerization , Electron Spin Resonance Spectroscopy , Mass Spectrometry , Molecular Sequence Data , Nuclear Magnetic Resonance, Biomolecular , Periplasm/chemistry , Sequence Alignment , Spectrophotometry , Surface Plasmon Resonance
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