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1.
Epilepsia ; 65(4): 1128-1140, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38299621

ABSTRACT

OBJECTIVE: Children with self-limited epilepsy characterized by centrotemporal spikes (SeLECTS) exhibit cognitive deficits in memory during the active phase, but there is currently a lack of studies and techniques to assess their memory development after well-controlled seizures. In this study, we employed eye-tracking techniques to investigate visual memory and its association with clinical factors and global intellectual ability, aiming to identify potential risk factors by examining encoding and recognition processes. METHODS: A total of 26 recruited patients diagnosed with SeLECTS who had been seizure-free for at least 2 years, along with 24 control subjects, underwent Wechsler cognitive assessment and an eye-movement-based memory task while video-electroencephalographic (EEG) data were recorded. Fixation and pupil data related to eye movements were utilized to detect distinct memory processes and subsequently to compare the cognitive performance of patients exhibiting different regression patterns on EEG. RESULTS: The findings revealed persistent impairments in visual memory among children with SeLECTS after being well controlled, primarily observed in the recognition stage rather than the encoding phase. Furthermore, the age at onset, frequency of seizures, and interictal epileptiform discharges exhibited significant correlations with eye movement data. SIGNIFICANCE: Children with SeLECTS exhibit persistent recognition memory impairment after being well controlled for the disease. Controlling the frequency of seizures and reducing prolonged epileptiform activity may improve memory cognitive development. The application of the eye-tracking technique may provide novel insights into exploring memory cognition as well as underlying mechanisms associated with pediatric epilepsy.


Subject(s)
Epilepsy, Rolandic , Eye-Tracking Technology , Humans , Child , Seizures/diagnosis , Cognition , Electroencephalography/methods , Memory Disorders/etiology , Memory Disorders/complications , Epilepsy, Rolandic/complications , Epilepsy, Rolandic/psychology
2.
Neural Netw ; 169: 108-119, 2024 Jan.
Article in English | MEDLINE | ID: mdl-37890361

ABSTRACT

Childhood demyelinative diseases classification (DDC) with brain magnetic resonance imaging (MRI) is crucial to clinical diagnosis. But few attentions have been paid to DDC in the past. How to accurately differentiate pediatric-onset neuromyelitis optica spectrum disorder (NMOSD) from acute disseminated encephalomyelitis (ADEM) based on MRI is challenging in DDC. In this paper, a novel architecture M-DDC based on joint U-Net segmentation network and deep convolutional network is developed. The U-Net segmentation can provide pixel-level structure information, that helps the lesion areas location and size estimation. The classification branch in DDC can detect the regions of interest inside MRIs, including the white matter regions where lesions appear. The performance of the proposed method is evaluated on MRIs of 201 subjects recorded from the Children's Hospital of Zhejiang University School of Medicine. The comparisons show that the proposed DDC achieves the highest accuracy of 99.19% and dice of 71.1% for ADEM and NMOSD classification and segmentation, respectively.


Subject(s)
Magnetic Resonance Imaging , Neuromyelitis Optica , Child , Humans , Magnetic Resonance Imaging/methods , Brain/diagnostic imaging , Neuromyelitis Optica/diagnostic imaging , Neuromyelitis Optica/pathology , Image Processing, Computer-Assisted/methods , Aromatic-L-Amino-Acid Decarboxylases
3.
IEEE Trans Biomed Eng ; 71(4): 1332-1344, 2024 Apr.
Article in English | MEDLINE | ID: mdl-37983148

ABSTRACT

OBJECTIVE: In this paper, a novel extended form of multivariate variational mode decomposition (MVMD) method to multigroup data named as grouped MVMD (GMVMD) is proposed. GMVMD is distinct from MVMD as it extracts common frequencies with strong correlations among regional channels. METHODS: Firstly, GMVMD utilizes a new clustering algorithm named as frequencies grouping algorithm to classify the nearest common frequencies among all channels to specified groups. Secondly, a generic variational optimization model which is extended from MVMD is formulated. Thirdly, alternating direction method of multipliers (ADMM) is utilized to obtain optimal solution of GMVMD model. RESULTS: The proposed method introduces an extra parameter to decide the number of clusterings which need to be specified by the user. The effectiveness and superiority of the algorithm are demonstrated on a series of experiments. The utility of GMVMD is verified by grouping real-world electroencephalogram (EEG) data having similar center frequencies successfully. CONCLUSION: GMVMD outperforms MVMD in mode-alignment, signal reduction error and et al. Significance: GMVMD can obtain more accurate center frequencies and less signal reduction error than MVMD.


Subject(s)
Algorithms , Electroencephalography , Cluster Analysis
4.
Mult Scler Relat Disord ; 70: 104496, 2023 Feb.
Article in English | MEDLINE | ID: mdl-36623395

ABSTRACT

OBJECTIVE: The differences in magnetic resonance imaging (MRI) between children with classic acute disseminated encephalomyelitis (ADEM) and myelinal oligodendrocyte glycoprotein antibody associated disease (MOGAD) with ADEM-like presentation are controversial. The purpose of this study was to investigate whether the radiological characteristics of the MRI-FLAIR sequence can predict MOGAD in children with ADEM-like presentation and to further explore its imaging differences. METHODS: We extracted 1041 radiomics features from MRI-FLAIR lesions. Then we used the redundancy analysis (Spearman correlation coefficient), significance test (student test or Mann-Whitney U test), least absolute contraction and selection operator (LASSO) to select potential predictors from the feature groups. The selected potential predictors and MOG antibody test results were used to fit the machine learning model for classification. Combined with feature selection and machine learning classifiers, the optimal model for each subgroup was derived. The resulting models have been evaluated using the receiver operator characteristic curve (ROC) at the lesion level and the model performance was evaluated at the case level using decision curve analysis. RESULTS: We retrospectively reviewed and re-diagnosed 70 ADEM-like presentation cases in our center from April 2015 to January 2020. Including 49 cases with classic ADEM and 21 cases with MOGAD. 30(43%) were female, with a median age of 5.3 years. On the four subgroups by age and gender, the area under the curve (AUC) of the optimal models were 89%, 90%, 98%, and 99%, and the MOGAD detection rates (Specificity) were 83%, 83%, 92%, and 75%, respectively. CONCLUSIONS: The machine learning model trained on radiomics features of MR-FLAIR images can effectively predict patients' MOGAD. This study provides a fast, objective, and quantifiable method for MOGAD diagnosis.


Subject(s)
Encephalomyelitis, Acute Disseminated , Female , Male , Humans , Retrospective Studies , Magnetic Resonance Imaging/methods , Autoantibodies
5.
IEEE Trans Neural Netw Learn Syst ; 34(2): 958-972, 2023 Feb.
Article in English | MEDLINE | ID: mdl-34437070

ABSTRACT

Ridge regression (RR) has been commonly used in machine learning, but is facing computational challenges in big data applications. To meet the challenges, this article develops a highly parallel new algorithm, i.e., an accelerated maximally split alternating direction method of multipliers (A-MS-ADMM), for a class of generalized RR (GRR) that allows different regularization factors for different regression coefficients. Linear convergence of the new algorithm along with its convergence ratio is established. Optimal parameters of the algorithm for the GRR with a particular set of regularization factors are derived, and a selection scheme of the algorithm parameters for the GRR with general regularization factors is also discussed. The new algorithm is then applied in the training of single-layer feedforward neural networks. Experimental results on performance validation on real-world benchmark datasets for regression and classification and comparisons with existing methods demonstrate the fast convergence, low computational complexity, and high parallelism of the new algorithm.

6.
IEEE Trans Med Imaging ; 42(2): 354-367, 2023 02.
Article in English | MEDLINE | ID: mdl-35767511

ABSTRACT

For significant memory concern (SMC) and mild cognitive impairment (MCI), their classification performance is limited by confounding features, diverse imaging protocols, and limited sample size. To address the above limitations, we introduce a dual-modality fused brain connectivity network combining resting-state functional magnetic resonance imaging (fMRI) and diffusion tensor imaging (DTI), and propose three mechanisms in the current graph convolutional network (GCN) to improve classifier performance. First, we introduce a DTI-strength penalty term for constructing functional connectivity networks. Stronger structural connectivity and bigger structural strength diversity between groups provide a higher opportunity for retaining connectivity information. Second, a multi-center attention graph with each node representing a subject is proposed to consider the influence of data source, gender, acquisition equipment, and disease status of those training samples in GCN. The attention mechanism captures their different impacts on edge weights. Third, we propose a multi-channel mechanism to improve filter performance, assigning different filters to features based on feature statistics. Applying those nodes with low-quality features to perform convolution would also deteriorate filter performance. Therefore, we further propose a pooling mechanism, which introduces the disease status information of those training samples to evaluate the quality of nodes. Finally, we obtain the final classification results by inputting the multi-center attention graph into the multi-channel pooling GCN. The proposed method is tested on three datasets (i.e., an ADNI 2 dataset, an ADNI 3 dataset, and an in-house dataset). Experimental results indicate that the proposed method is effective and superior to other related algorithms, with a mean classification accuracy of 93.05% in our binary classification tasks. Our code is available at: https://github.com/Xuegang-S.


Subject(s)
Alzheimer Disease , Diffusion Tensor Imaging , Humans , Magnetic Resonance Imaging/methods , Alzheimer Disease/diagnostic imaging , Brain , Brain Mapping/methods
7.
Neural Netw ; 158: 89-98, 2023 Jan.
Article in English | MEDLINE | ID: mdl-36446158

ABSTRACT

Automatic detection of retinal diseases based on deep learning technology and Ultra-widefield (UWF) images plays an important role in clinical practices in recent years. However, due to small lesions and limited data samples, it is not easy to train a detection-accurate model with strong generalization ability. In this paper, we propose a lesion attention conditional generative adversarial network (LAC-GAN) to synthesize retinal images with realistic lesion details to improve the training of the disease detection model. Specifically, the generator takes the vessel mask and class label as the conditional inputs, and processes the random Gaussian noise by a series of residual block to generate the synthetic images. To focus on pathological information, we propose a lesion feature attention mechanism based on random forest (RF) method, which constructs its reverse activation network to activate the lesion features. For discriminator, a weight-sharing multi-discriminator is designed to improve the performance of model by affine transformations. Experimental results on multi-center UWF image datasets demonstrate that the proposed method can generate retinal images with reasonable details, which helps to enhance the performance of the disease detection model.


Subject(s)
Generalization, Psychological , Image Processing, Computer-Assisted , Image Processing, Computer-Assisted/methods
8.
Article in English | MEDLINE | ID: mdl-36395132

ABSTRACT

Infantile spasms (IS) is a typical childhood epileptic disorder with generalized seizures. The sudden, frequent and complex characteristics of infantile spasms are the main causes of sudden death, severe comorbidities and other adverse consequences. Effective prediction is highly critical to infantile spasms subjects, but few related studies have been done in the past. To address this, this study proposes a seizure prediction framework for infantile spasms by combining the statistical analysis and deep learning model. The analysis is conducted on dividing the continuous scalp electroencephalograms (sEEG) into 5 phases: Interictal, Preictal, Seizure Prediction Horizon (SPH), Seizure, and Postictal. The brain network of Phase-Locking Value (PLV) of 5 typical brain rhythms is constructed, and the mechanism of epileptic changes is analyzed by statistical methods. It is found that 1) the connections between the prefrontal, occipital, and central regions show a large variability at each stage of seizure transition, and 2) 4 sub-bands of brain rhythms ( θ , α , ß , γ ) are predominant. Group and individual variabilities are validated by using the Resnet18 deep model on data from 25 patients with infantile spasms, where the consistent results to statistical analyses can be observed. The optimized model achieves an average of 79.78 % , 94.46% , 75.46% accuracy, specificity, and recall rate, respectively. The method accomplishes the analysis of the synergy between infantile spasms mechanism, model, data and algorithm, providing a guideline to build an intelligent and systematic model for comprehensive IS seizure prediction.


Subject(s)
Epilepsy , Spasms, Infantile , Humans , Infant , Child , Spasms, Infantile/diagnosis , Seizures/diagnosis , Spasm , Electroencephalography/methods
9.
Front Hum Neurosci ; 17: 1228195, 2023.
Article in English | MEDLINE | ID: mdl-38283095

ABSTRACT

In a recent review, we summarized the characteristics of perceptual-motor style in humans. Style can vary from individual to individual, task to task and pathology to pathology, as sensorimotor transformations demonstrate considerable adaptability and plasticity. Although the behavioral evidence for individual styles is substantial, much remains to be done to understand the neural and mechanical substrates of inter-individual differences in sensorimotor performance. In this study, we aimed to investigate the modulation of perceptual-motor style during locomotion at height in 16 persons with no history of fear of heights or acrophobia. We used an inexpensive virtual reality (VR) video game. In this VR game, Richie's Plank, the person progresses on a narrow plank placed between two buildings at the height of the 30th floor. Our first finding was that the static markers (head, trunk and limb configurations relative to the gravitational vertical) and some dynamic markers (jerk, root mean square, sample entropy and two-thirds power law at head, trunk and limb level) we had previously identified to define perceptual motor style during locomotion could account for fear modulation during VR play. Our second surprising result was the heterogeneity of this modulation in the 16 young, healthy individuals exposed to moving at a height. Finally, 56% of participants showed a persistent change in at least one variable of their skeletal configuration and 61% in one variable of their dynamic control during ground locomotion after exposure to height.

10.
IEEE Trans Image Process ; 31: 6175-6187, 2022.
Article in English | MEDLINE | ID: mdl-36126028

ABSTRACT

In this paper, a full-reference video quality assessment (VQA) model is designed for the perceptual quality assessment of the screen content videos (SCVs), called the hybrid spatiotemporal feature-based model (HSFM). The SCVs are of hybrid structure including screen and natural scenes, which are perceived by the human visual system (HVS) with different visual effects. With this consideration, the three dimensional Laplacian of Gaussian (3D-LOG) filter and three dimensional Natural Scene Statistics (3D-NSS) are exploited to extract the screen and natural spatiotemporal features, based on the reference and distorted SCV sequences separately. The similarities of these extracted features are then computed independently, followed by generating the distorted screen and natural quality scores for screen and natural scenes. After that, an adaptive screen and natural quality fusion scheme through the local video activity is developed to combine them for arriving at the final VQA score of the distorted SCV under evaluation. The experimental results on the Screen Content Video Database (SCVD) and Compressed Screen Content Video Quality (CSCVQ) databases have shown that the proposed HSFM is more in line with the perceptual quality assessment of the SCVs perceived by the HVS, compared with a variety of classic and latest IQA/VQA models.


Subject(s)
Algorithms , Databases, Factual , Humans , Video Recording/methods
11.
Neural Netw ; 153: 76-86, 2022 Sep.
Article in English | MEDLINE | ID: mdl-35714423

ABSTRACT

The common age-dependent West syndrome can be diagnosed accurately by electroencephalogram (EEG), but its pathogenesis and evolution remain unclear. Existing research mainly aims at the study of West seizure markers in time/frequency domain, while less literature uses a graph-theoretic approach to analyze changes among different brain regions. In this paper, the scalp EEG based functional connectivity (including Correlation, Coherence, Time Frequency Cross Mutual Information, Phase-Locking Value, Phase Lag Index, Weighted Phase Lag Index) and network topology parameters (including Clustering coefficient, Feature path length, Global efficiency, and Local efficiency) are comprehensively studied for the prognostic analysis of the West episode cycle. The scalp EEGs of 15 children with clinically diagnosed string spasticity seizures are used for prospective study, where the signal is divided into pre-seizure, seizure, and post-seizure states in 5 typical brain wave rhythm frequency bands (δ (1-4 Hz), θ (4-8 Hz), α (8-13 Hz), ß (13-30 Hz), and γ (30-80 Hz)) for functional connectivity analysis. The study shows that recurrent West seizures weaken connections between brain regions responsible for cognition and intelligence, while brain regions responsible for information synergy and visual reception have greater variability in connectivity during seizures. It is observed that the changes inßandγfrequency bands of the multiband brain network connectivity patterns calculated by Corr and WPLI can be preliminarily used as judgment of seizure cycle changes in West syndrome.


Subject(s)
Spasms, Infantile , Brain , Child , Electroencephalography , Humans , Infant , Prospective Studies , Scalp , Seizures/diagnosis , Spasms, Infantile/diagnosis
12.
Front Oncol ; 12: 772403, 2022.
Article in English | MEDLINE | ID: mdl-35463378

ABSTRACT

Purpose: Prostate biopsy histopathology and immunohistochemistry are important in the differential diagnosis of the disease and can be used to assess the degree of prostate cancer differentiation. Today, prostate biopsy is increasing the demand for experienced uropathologists, which puts a lot of pressure on pathologists. In addition, the grades of different observations had an indicating effect on the treatment of the patients with cancer, but the grades were highly changeable, and excessive treatment and insufficient treatment often occurred. To alleviate these problems, an artificial intelligence system with clinically acceptable prostate cancer detection and Gleason grade accuracy was developed. Methods: Deep learning algorithms have been proved to outperform other algorithms in the analysis of large data and show great potential with respect to the analysis of pathological sections. Inspired by the classical semantic segmentation network, we propose a pyramid semantic parsing network (PSPNet) for automatic prostate Gleason grading. To boost the segmentation performance, we get an auxiliary prediction output, which is mainly the optimization of auxiliary objective function in the process of network training. The network not only includes effective global prior representations but also achieves good results in tissue micro-array (TMA) image segmentation. Results: Our method is validated using 321 biopsies from the Vancouver Prostate Centre and ranks the first on the MICCAI 2019 prostate segmentation and classification benchmark and the Vancouver Prostate Centre data. To prove the reliability of the proposed method, we also conduct an experiment to test the consistency with the diagnosis of pathologists. It demonstrates that the well-designed method in our study can achieve good results. The experiment also focused on the distinction between high-risk cancer (Gleason pattern 4, 5) and low-risk cancer (Gleason pattern 3). Our proposed method also achieves the best performance with respect to various evaluation metrics for distinguishing benign from malignant. Availability: The Python source code of the proposed method is publicly available at https://github.com/hubutui/Gleason. All implementation details are presented in this paper. Conclusion: These works prove that the Gleason grading results obtained from our method are effective and accurate.

13.
Article in English | MEDLINE | ID: mdl-35363618

ABSTRACT

OBJECTIVES: Eye blink artifact detection in scalp electroencephalogram (EEG) of epilepsy patients is challenging due to its similar waveforms to epileptiform discharges. Developing an accurate detection method is urgent and critical. METHODS: In this paper, we proposed a novel multi-dimensional feature optimization based eye blink artifact detection algorithm for EEGs containing rich epileptiform discharges. An unsupervised clustering algorithm based on smoothed nonlinear energy operator (SNEO) and variational mode extraction (VME) is proposed to detect epileptiform discharges in the frontal leads. Then, multi-dimensional time/frequency EEG features extracted from forehead electrodes (FP1 and FP2 channels) combining with the improved VME (IVME) threshold are derived for EEG representation. A variance filtering method is further applied for discriminative feature selection and a machine learning model is finally learned to perform detection. RESULTS: Experiments on EEGs of 16 subjects from the Children's Hospital of Zhejiang University School of Medicine (CHZU) show that our method achieves the highest average sensitivity, specificity and accuracy of 95.04, 89.52, and 93.01, respectively. That outperforms 5 recent and state-of-the-art (SOTA) eye blink detection algorithms. SIGNIFICANCE: The proposed method is robust in eye blink artifact detection for EEGs containing high-frequency epileptiform discharges. It is also effective in dealing with individual differences in EEGs, which is usually ignored in conventional methods.


Subject(s)
Blinking , Epilepsy , Algorithms , Artifacts , Child , Electroencephalography/methods , Epilepsy/diagnosis , Humans
14.
Neural Netw ; 150: 313-325, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35339011

ABSTRACT

Accurate classification of the children's epilepsy syndrome is vital to the diagnosis and treatment of epilepsy. But existing literature mainly focuses on seizure detection and few attention has been paid to the children's epilepsy syndrome classification. In this paper, we present a study on the classification of two most common epilepsy syndromes: the benign childhood epilepsy with centro-temporal spikes (BECT) and the infantile spasms (also known as the WEST syndrome), recorded from the Children's Hospital, Zhejiang University School of Medicine (CHZU). A novel feature fusion model based on the deep transfer learning and the conventional time-frequency representation of the scalp electroencephalogram (EEG) is developed for the epilepsy syndrome characterization. A fully connected network is constructed for the feature learning and syndrome classification. Experiments on the CHZU database show that the proposed algorithm can offer an average of 92.35% classification accuracy on the BECT and WEST syndromes and their corresponding normal cases.


Subject(s)
Epilepsy , Epileptic Syndromes , Algorithms , Child , Electroencephalography , Epilepsy/diagnosis , Epilepsy/genetics , Humans , Seizures/diagnosis , Signal Processing, Computer-Assisted , Syndrome
15.
Article in English | MEDLINE | ID: mdl-37015546

ABSTRACT

Transfer learning (TL) has been applied in seizure detection to deal with differences between different subjects or tasks. In this paper, we consider cross-subject seizure detection that does not rely on patient history records, that is, acquiring knowledge from other subjects through TL to improve seizure detection performance. We propose a novel domain adaptation method, named the Cluster Embedding Joint-Probability-Discrepancy Transfer (CEJT), for data distribution structure learning. Specifically, 1) The joint probability distribution discrepancy is minimized to reduce the distribution shift in the source and target domains, and strengthen the discriminative knowledge of classes. 2) A clustering is performed on the target domain, and the class centroids of sources is used as the clustering prototype of the target domain to enhance data structure. It is worth noting that the manifold regularization is used to improve the quality of clustering prototypes. In addition, a correlation-alignment-based source selection metric (SSC) is designed for most favorable subject selection, reducing the computational cost as well as avoiding some negative transfer. Experiments on 15 patients with focal epilepsy from the Children's Hospital, Zhejiang University School of Medicine (CHZU) database shown that CEJT outperforms several state-of-the-art approaches, and can promote the application of seizure detection.

16.
Article in English | MEDLINE | ID: mdl-34428145

ABSTRACT

The benign epilepsy with spinous waves in the central temporal region (BECT) is the one of the most common epileptic syndromes in children, that seriously threaten the nervous system development of children. The most obvious feature of BECT is the existence of a large number of electroencephalogram (EEG) spikes in the Rolandic area during the interictal period, that is an important basis to assist neurologists in BECT diagnosis. With this regard, the paper proposes a novel BECT spike detection algorithm based on time domain EEG sequence features and the long short-term memory (LSTM) neural network. Three time domain sequence features, that can obviously characterize the spikes of BECT, are extracted for EEG representation. The synthetic minority oversampling technique (SMOTE) is applied to address the spike imbalance issue in EEGs, and the bi-directional LSTM (BiLSTM) is trained for spike detection. The algorithm is evaluated using the EEG data of 15 BECT patients recorded from the Children's Hospital, Zhejiang University School of Medicine (CHZU). The experiment shows that the proposed algorithm can obtained an average of 88.54% F1 score, 92.04% sensitivity, and 85.75% precision, that generally outperforms several state-of-the-art spike detection methods.


Subject(s)
Electroencephalography , Epilepsy , Algorithms , Child , Epilepsy/diagnosis , Humans , Memory, Long-Term , Temporal Lobe
17.
Article in English | MEDLINE | ID: mdl-34310312

ABSTRACT

Accurate eye blink artifact detection is essential for electroencephalogram (EEG) analysis and auxiliary analysis of nervous system diseases, especially in the presence of the frontal epileptiform discharges. In this paper, we develop a novel eye blink artifact detection algorithm based on optimally selected multi-dimensional EEG features. Specific efforts have been paid to filtering the frontal epileptiform discharges, where an unsupervised learning exploiting the EEG signal physiological characteristics and smooth nonlinear energy operator (SNEO) based on the K-means clustering has been firstly proposed. Multiple statistical EEG features derived from the frontal electrodes and other electrodes are then extracted to characterize eye blink artifacts. Discriminative feature selection scheme based on the variance filtering and Relief algorithms has been respectively studied, and the average correlation coefficient (ACC) is applied for feature optimization evaluation. The eye blink artifact detection is finally achieved based on the support vector machine (SVM) trained on the optimized EEG features. The effectiveness of the proposed algorithm is demonstrated by experiments carried out on the EEG database of 11 subjects recorded from the Children's Hospital, Zhejiang University School of Medicine (CHZU). Comparisons to several state-of-the-art (SOTA) eye blink artifact detection methods are also presented.


Subject(s)
Artifacts , Signal Processing, Computer-Assisted , Algorithms , Blinking , Child , Electroencephalography , Humans
18.
Med Image Anal ; 71: 102031, 2021 07.
Article in English | MEDLINE | ID: mdl-33798993

ABSTRACT

Fundus diseases classification is vital for the health of human beings. However, most of existing methods detect diseases by means of single angle fundus images, which lead to the lack of pathological information. To address this limitation, this paper proposes a novel deep learning method to complete different fundus diseases classification tasks using ultra-wide field scanning laser ophthalmoscopy (SLO) images, which have an ultra-wide field view of 180-200˚. The proposed deep model consists of multi-branch network, atrous spatial pyramid pooling module (ASPP), cross-attention and depth-wise attention module. Specifically, the multi-branch network employs the ResNet-34 model as the backbone to extract feature information, where the ResNet-34 model with two-branch is followed by the ASPP module to extract multi-scale spatial contextual features by setting different dilated rates. The depth-wise attention module can provide the global attention map from the multi-branch network, which enables the network to focus on the salient targets of interest. The cross-attention module adopts the cross-fusion mode to fuse the channel and spatial attention maps from the ResNet-34 model with two-branch, which can enhance the representation ability of the disease-specific features. The extensive experiments on our collected SLO images and two publicly available datasets demonstrate that the proposed method can outperform the state-of-the-art methods and achieve quite promising classification performance of the fundus diseases.


Subject(s)
Image Processing, Computer-Assisted , Fundus Oculi , Humans , Ophthalmoscopy
19.
IEEE J Biomed Health Inform ; 25(8): 2895-2905, 2021 08.
Article in English | MEDLINE | ID: mdl-33560994

ABSTRACT

Eye blink is one of the most common artifacts in electroencephalogram (EEG) and significantly affects the performance of the EEG related applications, such as epilepsy recognition, spike detection, encephalitis diagnosis, etc. To achieve an accurate and efficient eye blink detection, a novel unsupervised learning algorithm based on a hybrid thresholding followed with a Gaussian mixture model (GMM) is presented in this paper. The EEG signal is priliminarily screened by a cascaded thresholding method built on the distributions of signal amplitude, amplitude displacement, as well as the cross channel correlation. Then, the channel correlation of the two frontal electrodes (FP1, FP2), the fractal dimension, and the mean of amplitude difference between FP1 and FP2, are extracted to characterize the filtered EEGs. The GMM trained on these features is applied for the eye blink detection. The performance of the proposed algorithm is studied on two EEG datasets collected by the Temple University Hospital (TUH) and the Children's Hospital, Zhejiang University School of Medicine (CHZU), where the datasets are recorded from epilepsy and encephalitis patients, and contain a lot of eye blink artifacts. Experimental results show that the proposed algorithm can achieve the highest detection precision and F1 score over the state-of-the-art methods.


Subject(s)
Artifacts , Signal Processing, Computer-Assisted , Algorithms , Blinking , Child , Electroencephalography , Humans
20.
Med Image Anal ; 69: 101947, 2021 04.
Article in English | MEDLINE | ID: mdl-33388456

ABSTRACT

Graph convolution networks (GCN) have been successfully applied in disease prediction tasks as they capture interactions (i.e., edges and edge weights on the graph) between individual elements. The interactions in existing works are constructed by fusing similarity between imaging information and distance between non-imaging information, whereas disregarding the disease status of those individuals in the training set. Besides, the similarity is being evaluated by computing the correlation distance between feature vectors, which limits prediction performance, especially for predicting significant memory concern (SMC) and mild cognitive impairment (MCI). In this paper, we propose three mechanisms to improve GCN, namely similarity-aware adaptive calibrated GCN (SAC-GCN), for predicting SMC and MCI. First, we design a similarity-aware graph using different receptive fields to consider disease status. The labelled subjects on the graph are only connected with those labelled subjects with the same status. Second, we propose an adaptive mechanism to evaluate similarity. Specifically, we construct initial GCN with evaluating similarity by using traditional correlation distance, then pre-train the initial GCN by using training samples and use it to score all subjects. Then, the difference between these scores replaces correlation distance to update similarity. Last, we devise a calibration mechanism to fuse functional magnetic resonance imaging (fMRI) and diffusion tensor imaging (DTI) information into edges. The proposed method is tested on the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset. Experimental results demonstrate that our proposed method is useful to predict disease-induced deterioration and superior to other related algorithms, with a mean classification accuracy of 86.83% in our prediction tasks.


Subject(s)
Alzheimer Disease , Diffusion Tensor Imaging , Algorithms , Alzheimer Disease/diagnostic imaging , Calibration , Humans , Neuroimaging
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