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1.
Plants (Basel) ; 9(10)2020 Oct 17.
Article in English | MEDLINE | ID: mdl-33080882

ABSTRACT

PHT1 (phosphate transporter 1) family genes play important roles in regulating plant growth and responding to stress. However, there has been little research on the role of the PHT1 family in potatoes. In this study, using molecular and bioinformatic approaches, 8 PHT1 family genes were identified from the potato genome. StPHT1;7 was highly expressed in the whole potato plants. The overexpression and silence vectors of StPHT1;7 were constructed and transformed into the potato cultivar Desiree. Consequently, StPHT1;7 overexpression (with a relative expression 2-7-fold that in the control) and silence lines (with a relative expression of 0.3%-1% that in the control) were obtained. Their growth vigor was ranked in the order overexpression line > wild type > silence line. In the absence of phosphorus, the root length of the overexpression line was approximately 2.6 times that of the wild type, while the root length of the silence line was approximately 0.6 times that of the wild type. Furthermore, their tolerance to drought stress was ranked as wild type > overexpression line > silence line. These results suggest that StPHT1;7 affects growth and stress tolerance in potato plants.

2.
BMC Genomics ; 21(1): 391, 2020 Jun 05.
Article in English | MEDLINE | ID: mdl-32503414

ABSTRACT

BACKGROUND: Nitrogen is an indispensable nutrient for plant growth. It is used and transported in the form of amino acids in living organisms. Transporting amino acids to various parts of plants requires relevant transport proteins, such as amino acid permeases (AAPs), which were our focus in this study. RESULTS: We found that 5 AAP genes were present in Chlorophyte species and more AAP genes were predicted in Bryophyta and Lycophytes. Two main groups were defined and group I comprised 5 clades. Our phylogenetic analysis indicated that the origin of clades 2, 3, and 4 is Gymnospermae and that these clades are closely related. The members of clade 1 included Chlorophyta to Gymnospermae. Group II, as a new branch consisting of non-seed plants, is first proposed in our research. Our results also indicated that the AAP family was already present in Chlorophyta and then expanded accompanying the development of vasculature. Concurrently, the AAP family experienced multiple duplication events that promoted the generation of new functions and differentiation of sub-functions. CONCLUSIONS: Our findings suggest that the AAP gene originated in Chlorophyta, and some non-seed AAP genes clustered in one group. A second group, which contained plants of all evolutionary stages, indicated the evolution of AAPs. These new findings can be used to guide future research.


Subject(s)
Amino Acid Transport Systems/genetics , Chlorophyta/enzymology , Magnoliopsida/enzymology , Sequence Analysis, DNA/methods , Chlorophyta/classification , Chlorophyta/genetics , Evolution, Molecular , Gene Duplication , Magnoliopsida/classification , Magnoliopsida/genetics , Multigene Family , Nitrogen/metabolism , Phylogeny , Plant Proteins/genetics
3.
Int J Mol Sci ; 20(21)2019 Oct 28.
Article in English | MEDLINE | ID: mdl-31661866

ABSTRACT

Lateral organ boundaries domain (LBD) proteins belong to a particular class of transcription factors of lateral organ boundary (LOB) specific domains that play essential roles in plant growth and development. However, a potato phylogenetic analysis of the LBD family has not been fully studied by scholars and researchers. In this research, bioinformatics methods and the growth of potatoes were used to identify 43 StLBD proteins. We separated them into seven subfamilies: Ia, Ib, Ic, Id, Ie, IIa and IIb. The number of amino acids encoded by the potato LBD family ranged from 94 to 327. The theoretical isoelectric point distribution ranged from 4.16 to 9.12 Kda, and they were distributed among 10 chromosomes. The results of qRT-PCR showed that the expression levels of StLBD2-6 and StLBD3-5 were up-regulated under drought stress in the stem. The expression levels of StLBD1-5 and StLBD2-6 were down-regulated in leaves. We hypothesized that StLBD1-5 was down-regulated under drought stress, and that StLBD2-6 and StLBD3-5 up-regulation might help to maintain the normal metabolism of potato and enhance the potatoes' resistance to drought.


Subject(s)
Multigene Family/genetics , Plant Leaves/metabolism , Plant Proteins/genetics , Solanum tuberosum/genetics , Transcription Factors/genetics , Arabidopsis Proteins/genetics , Chromosome Mapping , Cluster Analysis , Droughts , Gene Expression Profiling , Gene Expression Regulation, Plant , Genome, Plant , Multigene Family/physiology , Phylogeny , Plant Leaves/growth & development , Plant Proteins/metabolism , Protein Domains/genetics , RNA-Seq , Solanum tuberosum/growth & development , Solanum tuberosum/metabolism , Stress, Physiological , Transcription Factors/metabolism
4.
Gene ; 697: 103-117, 2019 May 20.
Article in English | MEDLINE | ID: mdl-30776460

ABSTRACT

HD-ZIP (Homeodomain leucine zipper) transcription factors play an important regulatory role in stress resistance in plants. The purpose of this study was to analyze the characteristics of the HD-ZIP genes/proteins and to study their expression profiles under high and low temperature conditions in potato (Solanum tuberosum L.). A strict homology search was used to find 43 HD-ZIP genes located on potato chromosomes 1-12. Exons/introns, protein features and conserved motifs were analyzed, and six segment duplications were identified from 43 HD-ZIP genes. Then, we analyzed the data from the PGSC (Potato Genome Sequencing Consortium) database regarding the expression of 43 HD-ZIP genes that were induced by biotic and abiotic stresses and phytohormone treatments and conducted an expression analysis for these genes across all potato life stages. Additionally, the expression levels of 13 HD-ZIP genes were analyzed under high temperature (37 °C) and low temperature (4 °C) conditions. The results showed that the transcript levels of all 13 genes changed, which indicated that these genes respond to heat and cold in plants. Especially for StHOX20, the expression significantly upregulated in roots at 37 °C and 4 °C. Our findings laid the foundation and provided clues for understanding the biological functions of HD-ZIP family genes.


Subject(s)
Homeodomain Proteins/genetics , Leucine Zippers/genetics , Solanum tuberosum/genetics , Amino Acid Motifs/genetics , Amino Acid Sequence , Base Sequence , Chromosome Mapping , Gene Expression Profiling/methods , Gene Expression Regulation, Plant/genetics , Genes, Plant/genetics , Genome, Plant/genetics , Phylogeny , Plant Proteins/genetics , Transcription Factors
5.
Obesity (Silver Spring) ; 26(3): 522-530, 2018 03.
Article in English | MEDLINE | ID: mdl-29464908

ABSTRACT

OBJECTIVE: Assortative mating for adiposity increases the genetic burden on offspring, but its causes remain unclear. One hypothesis is that people who have high adiposity find other people with obesity more physically attractive than lean people. METHODS: The attractiveness of sets of images of males and females who varied in adiposity were rated by opposite sex subjects (559 males and 340 females) across 12 countries. RESULTS: There was tremendous individual variability in attractiveness ratings. For female attractiveness, most males favored the leanest subjects, but others favored intermediate fatness, some were indifferent to body composition, and others rated the subjects with obesity as most attractive. For male images rated by females, the patterns were more complex. Most females favored subjects with low levels of adiposity (but not the lowest level), whereas others were indifferent to body fatness or rated the images depicting individuals with obesity as the most attractive. These patterns were unrelated to rater BMI. Among Caucasian males who rated the images of the thinnest females as being more attractive, the magnitude of the effect depended on rater BMI, indicating limited "mutual attraction." CONCLUSIONS: Individual variations in ratings of physical attractiveness were broadly unrelated to rater BMI and suggest that mutual attraction is an unlikely explanation for assortative mating for obesity.


Subject(s)
Beauty , Body Mass Index , Obesity/psychology , Adult , Female , Gender Identity , Humans , Male
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