ABSTRACT
Three Gram-stain-negative, motile, with amphilophotrichous flagella, and rod-shaped bacteria (LJ1, LJ2T and LJ3) were isolated from lower leaves with black spots on flue-cured tobacco in Yunnan, PR China. The results of phylogenetic analysis based on 16S rRNA gene sequences indicate that all the strains from tobacco were closely related to the type strains of the Pseudomonas syringae group within the P. fluorescens lineage and LJ2T has the highest sequence identities with P. cichorii DSM 50259T (99.92â%), P. capsici Pc19-1T (99.67â%) and P. ovata F51T (98.94â%) . The 16S rRNA gene sequence identities between LJ2T and other members of the genus Pseudomonas were below 98.50%. The average nucleotide identity by blast (ANIb) values between LJ2T and P. cichorii DSM 50259T, P. capsici Pc19-1T and P. ovata F51T were less than 95â%, and the in silico DNA-DNA hybridization (isDDH) values (yielded by formula 2) were less than 70â%. The major fatty acids were C16ââ:ââ1ω7c and/or C16ââ:ââ1ω6c (summed feature 3), C16ââ:ââ0 and C18ââ:ââ1ω7c and/or C18ââ:ââ1ω6c (summed feature 8). The polar lipids profile of LJ2T consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, two unidentified phospholipids and one unidentified glycolipid. The predominant respiratory quinone was Q-9. The DNA G+C content of LJ2T was 58.4 mol%. On the basis of these data, we concluded that LJ2T represents a novel species of the genus Pseudomonas, for which the name Pseudomonas lijiangensis sp. nov. is proposed. The type strain of Pseudomonas lijiangensis sp. nov. is LJ2T (=CCTCC AB 2021465T=GDMCC 1.2884T=JCM 35177T).
Subject(s)
Phosphatidylethanolamines , Pseudomonas , RNA, Ribosomal, 16S/genetics , Phylogeny , Base Composition , Nicotiana , DNA, Bacterial/genetics , Cardiolipins , Bacterial Typing Techniques , Fatty Acids/chemistry , Genes, Bacterial , Sequence Analysis, DNA , China , Phospholipids , Phosphatidylcholines , Glycolipids , Quinones , NucleotidesABSTRACT
A Gram-negative, aerobic, motile with paired polar flagella and rod-shaped bacterium strain (56D2T) was isolated from tobacco planting soil in Yunnan, PR China. Major fatty acids were C16ââ:ââ1 ω7c (summed feature 3), C16ââ:ââ0 and C18ââ:ââ1 ω7c (summed feature 8). The polar lipid profile of strain 56D2T consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, one unidentified aminophospholipid and one unidentified glycolipid. Moreover, strain 56D2T contained ubiquinone Q-8 as the sole respiratory quinone. 16S rRNA gene sequence analysis showed that strain 56D2T was closely related to members of the genus Ralstonia and the two type strains with the highest sequence identities were R. mannitolilytica LMG 6866T (98.36â%) and R. pickettii K-288T (98.22â%). The 16S rRNA gene sequence identities between strain 56D2T and other members of the genus Ralstonia were below 98.00â%. Genome sequencing revealed a genome size of 5.87 Mb and a G+C content of 63.7 mol%. The average nucleotide identity values between strain 56D2T and R. pickettii K-288T, R. mannitolilytica LMG 6866 T and R. insidiosa CCUG 46789T were less than 95â%, and the in silico DNA-DNA hybridization values (yielded by formula 2) were less than 70â%. Based on these data, we conclude that strain 56D2T represents a novel species of the genus Ralstonia, for which the name Ralstonia wenshanensis sp. nov. is proposed. The type strain of Ralstonia wenshanensis sp. nov. is 56D2T (=CCTCC AB 2021466T=GDMCC 1.2886T=JCM 35178T).
