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1.
Ultramicroscopy ; 246: 113688, 2023 Apr.
Article in English | MEDLINE | ID: mdl-36701963

ABSTRACT

Electron energy loss spectroscopy (EELS) is a proven tool for probing materials chemistry at high spatial resolution. Core-loss EELS fine structure should allow measurement of local polymer chemistry. For organic materials, sensitivity to radiolysis is expected to limit the resolution achievable with EELS: but core-loss EELS has proven difficult at any resolution, yielding inconsistent spectra that compare unfavorably with theoretically analogous x-ray absorption spectra. Many of the previously identified shortcomings should not be limiting factors on modern equipment. This study establishes that EELS can generate identifiable carbon K-edge spectra for a range of common polymer types and chemistry, and demonstrates fine structure features matching prior x-ray absorption spectra. EELS fine structure features broaden intuitively with the instrument's energy resolution, and beam-induced features are readily differentiated by collecting spectra at a series of doses. The results are demonstrated with spectrum images of a model polymer blend, and used to estimate practical pixel sizes that can be used for mapping core-loss EELS as a function of electron dose.

2.
Sci Adv ; 8(14): eabj6738, 2022 Apr 08.
Article in English | MEDLINE | ID: mdl-35385319

ABSTRACT

Damage evolution during fracture of metals is a critical factor in determining the reliability and integrity of the infrastructure that the society relies upon. However, experimental techniques for directly observing these phenomena have remained challenged. We have addressed this gap by developing a correlative microscopy framework combining high-resolution hyperspectral electron microscopy with laboratory x-ray microtomography (XMT) and applied it to study fracture mechanisms in a steel inclusion system. We observed damage nucleation and growth to be inhomogeneous and anisotropic. Fracture resistance was observed to be controlled by inclusion distribution and the size scale of an inclusion-depleted zone. Furthermore, our studies demonstrate that laboratory XMT can characterize damage to the micrometer scale with a large field of view in dense metals like steel, offering a more accessible alternative to synchrotron-based tomography. The framework presented provides a means to broadly adopt correlative microscopy for studies of degradation phenomena and help accelerate discovery of new materials solutions.

3.
Br J Clin Pharmacol ; 83(12): 2813-2820, 2017 12.
Article in English | MEDLINE | ID: mdl-28800383

ABSTRACT

AIMS: Cathepsin C (CTSC) is necessary for the activation of several serine proteases including neutrophil elastase (NE), cathepsin G and proteinase 3. GSK2793660 is an oral, irreversible inhibitor of CTSC that is hypothesized to provide an alternative route to achieve NE inhibition and was tested in a Phase I study. METHODS: Single escalating oral doses of GSK2793660 from 0.5 to 20 mg or placebo were administered in a randomized crossover design to healthy male subjects; a separate cohort received once daily doses of 12 mg or placebo for 21 days. Data were collected on safety, pharmacokinetics, CTSC enzyme inhibition and blood biomarkers. RESULTS: Single, oral doses of GSK2793660 were able to dose-dependently inhibit whole blood CTSC activity. Once daily dosing of 12 mg GSK2793660 for 21 days achieved ≥90% inhibition (95% CI: 56, 130) of CTSC within 3 h on day 1. Only modest reductions of whole blood enzyme activity of approximately 20% were observed for NE, cathepsin G and proteinase 3. Seven of 10 subjects receiving repeat doses of GSK2793660 manifested epidermal desquamation on palmar and plantar surfaces beginning 7-10 days after dosing commencement. There were no other clinically important safety findings. CONCLUSIONS: GSK2793660 inhibited CTSC activity but not the activity of downstream neutrophil serine proteases. The palmar-plantar epidermal desquamation suggests a previously unidentified role for CTSC or one of its target proteins in the maintenance and integrity of the epidermis at these sites, with some similarities to the phenotype of CTSC-deficient humans.


Subject(s)
Cathepsin C/antagonists & inhibitors , Dipeptides/adverse effects , Epithelial Cells/drug effects , Protease Inhibitors/adverse effects , Skin/drug effects , Administration, Oral , Adult , Cathepsin C/metabolism , Cross-Over Studies , Dipeptides/administration & dosage , Dose-Response Relationship, Drug , Drug Administration Schedule , Epithelial Cells/pathology , Healthy Volunteers , Humans , Male , Middle Aged , Protease Inhibitors/administration & dosage , Skin/pathology , Time Factors , Treatment Outcome , Young Adult
4.
J Pharmacol Exp Ther ; 362(2): 338-346, 2017 08.
Article in English | MEDLINE | ID: mdl-28611093

ABSTRACT

CXC chemokine receptor 2 (CXCR2) is a key receptor in the chemotaxis of neutrophils to sites of inflammation. The studies reported here describe the pharmacological characterization of danirixin, a CXCR2 antagonist in the diaryl urea chemical class. Danirixin has high affinity for CXCR2, with a negative log of the 50% inhibitory concentration (pIC50) of 7.9 for binding to Chinese hamster ovary cell (CHO)-expressed human CXCR2, and 78-fold selectivity over binding to CHO-expressed CXCR1. Danirixin is a competitive antagonist against CXCL8 in Ca2+-mobilization assays, with a KB (the concentration of antagonist that binds 50% of the receptor population) of 6.5 nM and antagonist potency (pA2) of 8.44, and is fully reversible in washout experiments over 180 minutes. In rat and human whole-blood studies assessing neutrophil activation by surface CD11b expression following CXCL2 (rat) or CXCL1 (human) challenge, danirixin blocks the CD11b upregulation with pIC50s of 6.05 and 6.3, respectively. Danirixin dosed orally also blocked the influx of neutrophils into the lung in vivo in rats following aerosol lipopolysaccharide or ozone challenge, with median effective doses (ED50s) of 1.4 and 16 mg/kg respectively. Thus, danirixin would be expected to block chemotaxis in disease states in which neutrophils are increased in response to inflammation, such as pulmonary diseases. In comparison with navarixin, a CXCR2 antagonist from a different chemical class, the binding characterization of danirixin is distinct. These observations may offer insight into the previously observed clinical differences in induction of neutropenia between these compounds.


Subject(s)
Piperidines/pharmacology , Receptors, Interleukin-8B/antagonists & inhibitors , Receptors, Interleukin-8B/metabolism , Sulfones/pharmacology , Animals , CHO Cells , Cricetinae , Cricetulus , Dose-Response Relationship, Drug , Humans , Interleukin-8/pharmacology , Male , Rats , Rats, Inbred Lew
5.
BMC Pharmacol Toxicol ; 16: 18, 2015 Jun 20.
Article in English | MEDLINE | ID: mdl-26092545

ABSTRACT

BACKGROUND: Excessive neutrophil presence and activation is important in a number of acute and chronic inflammatory diseases. The CXCR2 chemokine receptor is important in controlling the extravasation and activation of neutrophils. Selective antagonism of the CXCR2 receptor is a potential approach to reducing neutrophil migration and activation. Danirixin, is a small molecule, CXCR2 antagonist being evaluated as a potential anti-inflammatory medicine. METHODS: (1) First time in human (FTIH) double-blind, placebo-controlled study to evaluate the safety, pharmacokinetics, and pharmacodynamics of single ascending and repeat oral doses of danirixin in healthy male subjects; (2) single-dose study of age, gender, food, and proton-pump inhibitor effects on the pharmacokinetics of danirixin in healthy adult subjects; and placebo-controlled study of the pharmacokinetics of danirixin in healthy elderly subjects. RESULTS: There were no serious adverse events and no adverse events considered to be of clinical relevance. There were no withdrawals due to adverse events. Systemic exposure following single doses of danirixin 10 mg, 25 mg, 50 mg, 100 mg, and 200 mg increased with increasing dose. Engagement of pharmacology was demonstrated as inhibition of ex-vivo CXCL1-induced CD11b expression on peripheral blood neutrophils when compared to placebo (approximately 50% for 50 mg and 100 mg danirixin, and 72% at 200 mg). There was a 37% decrease in Cmax and a 16% decrease in AUC (0-∞) following administration of danirixin in the presence of food. Cmax also decreased by 65% when danirixin 100 mg was administered following omeprazole 40 mg once daily for 5 days. The AUC (0-∞) and Cmax were 50% lower in elderly subjects compared with younger subjects. CONCLUSION: The dose-dependent inhibition of agonist-induced neutrophil activation following single and repeated once daily oral administration of danirixin suggests that this CXCR2 antagonist may have benefit in neutrophil-predominant inflammatory diseases. Co-administration with food, gastric acid reducing agents, and variable exposure in the elderly have important clinical implications that need to be taken into consideration in subsequent clinical evaluations. TRIAL REGISTRATION: ClinicalTrials.gov identifiers: NCT01209052 and NCT01209104.


Subject(s)
Anti-Inflammatory Agents, Non-Steroidal/pharmacokinetics , Piperidines/pharmacokinetics , Receptors, Interleukin-8B/antagonists & inhibitors , Sulfones/pharmacokinetics , Adolescent , Adult , Age Factors , Aged , Anti-Inflammatory Agents, Non-Steroidal/adverse effects , Anti-Inflammatory Agents, Non-Steroidal/pharmacology , CD11b Antigen/blood , Chemokine CXCL1/antagonists & inhibitors , Chemokine CXCL1/pharmacology , Dose-Response Relationship, Drug , Double-Blind Method , Food/adverse effects , Healthy Volunteers , Humans , Male , Middle Aged , Neutrophils/drug effects , Neutrophils/metabolism , Omeprazole/pharmacology , Piperidines/adverse effects , Piperidines/pharmacology , Sulfones/adverse effects , Sulfones/pharmacology , Young Adult
6.
Am J Physiol Lung Cell Mol Physiol ; 304(5): L312-23, 2013 Mar 01.
Article in English | MEDLINE | ID: mdl-23292810

ABSTRACT

The role of T cells in chronic obstructive pulmonary disease (COPD) is not well understood. We have previously demonstrated that chronic cigarette smoke exposure can lead to the accumulation of CD4(+) and CD8(+) T cells in the alveolar airspaces in a mouse model of COPD, implicating these cells in disease pathogenesis. However, whether specific inhibition of T cell responses represents a therapeutic strategy has not been fully investigated. In this study inhibition of T cell responses through specific depleting antibodies, or the T cell immunosuppressant drug cyclosporin A, prevented airspace enlargement and neutrophil infiltration in a mouse model of chronic cigarette smoke exposure. Furthermore, individual inhibition of either CD4(+) T helper or CD8(+) T cytotoxic cells prevented airspace enlargement to a similar degree, implicating both T cell subsets as critical mediators of the adaptive immune response induced by cigarette smoke exposure. Importantly, T cell depletion resulted in significantly decreased levels of the Th17-associated cytokine IL-17A, and of caspase 3 and caspase 7 gene expression and activity, induced by cigarette smoke exposure. Finally, inhibition of T cell responses in a therapeutic manner also inhibited cigarette smoke-induced airspace enlargement, IL-17A expression, and neutrophil influx in mice. Together these data demonstrate for the first time that therapeutic inhibition of T cell responses may be efficacious in the treatment of COPD. Given that broad immunosuppression may be undesirable in COPD patients, this study provides proof-of-concept for more targeted approaches to inhibiting the role of T cells in emphysema development.


Subject(s)
CD4-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/immunology , Pulmonary Alveoli/pathology , Pulmonary Disease, Chronic Obstructive/immunology , Smoking , Animals , Caspase 3/blood , Caspase 7/biosynthesis , Caspase 7/genetics , Cyclosporine , Disease Models, Animal , Female , Gene Expression , Immunosuppression Therapy , Interleukin-17/blood , Lung Volume Measurements , Lymphocyte Activation , Lymphocyte Depletion , Mice , Mice, Inbred C57BL , Neutrophil Infiltration/immunology , Pulmonary Alveoli/immunology , Pulmonary Disease, Chronic Obstructive/pathology , Tobacco Smoke Pollution
8.
Vet Dermatol ; 19(6): 358-67, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19037915

ABSTRACT

The mouse In(15)2Rl (hairy ears, Eh) mutation is a paracentric inversion of the distal half of chromosome 15 (Chr 15). Heterozygous Eh/+ mice display misshaped and hairy ears that have more and longer hair than the ears of their wild-type littermates. We mapped, cloned and sequenced both inversion breakpoints. No protein-coding transcript was disrupted by either breakpoint. The proximal breakpoint is located between syntrophin basic 1 (Sntb1) and hyaluronan synthase 2 (Has2), and the distal breakpoint maps between homeobox C4 (Hoxc4) and single-strand selective monofunctional uracil DNA glycosylase (Smug1), near the middle and the telomere ends of Chr 15, respectively. The inversion spans ~47 megabases. Our genetic analysis suggests that the hairy-ear phenotype is caused by the proximal breakpoint of the inversion-bearing Chr 15. Quantitative RNA analysis by real-time polymerase chain reaction for the genes flanking the breakpoint indicated no changes in expression levels except for some homeobox C (Hoxc) genes whose expression was elevated in developing and mature skin of the ears but not of other body regions. The increased hair length on the ears of Eh/+ mice was due to an extension of the anagen stage in the hair cycle, as determined by histological analysis. Our data indicate that the Eh phenotype arises from mis-expression of Hoxc genes.


Subject(s)
Chromosome Inversion/genetics , Ear/physiology , Gene Expression Regulation/genetics , Hair/growth & development , Homeodomain Proteins/genetics , Animals , Chromosome Mapping , Cloning, Molecular , Female , Genotype , Hair/ultrastructure , Homeodomain Proteins/metabolism , Male , Mice , Mutation
9.
J Immunol ; 180(12): 7989-8003, 2008 Jun 15.
Article in English | MEDLINE | ID: mdl-18523262

ABSTRACT

Members of the papain family of cysteine proteases (cathepsins) mediate late stage processing of MHC class II-bound invariant chain (Ii), enabling dissociation of Ii, and binding of antigenic peptide to class II molecules. Recognition of cell surface class II/Ag complexes by CD4(+) T cells then leads to T cell activation. Herein, we demonstrate that a pan-active cathepsin inhibitor, SB-331750, attenuated the processing of whole cell Ii p10 to CLIP by Raji cells, and DBA/1, SJL/J, and C57BL/6 splenocytes. In Raji cells and C57BL/6 splenocytes, SB-331750 inhibited class II-associated Ii processing and reduced surface class II/CLIP expression, whereas in SB-331750-treated DBA/1 and SJL/J splenocytes, class II-associated Ii processing intermediates were undetectable. Incubation of lymph node cells/splenocytes from collagen-primed DBA/1 mice and myelin basic protein-primed SJL/J mice with Ag in the presence of SB-331750 resulted in concentration-dependent inhibition of Ag-induced proliferation. In vivo administration of SB-331750 to DBA/1, SJL/J, and C57BL/6 mice inhibited splenocyte processing of whole cell Ii p10 to CLIP. Prophylactic administration of SB-331750 to collagen-immunized/boosted DBA/1 mice delayed the onset and reduced the severity of collagen-induced arthritis (CIA), and reduced paw tissue levels of IL-1beta and TNF-alpha. Similarly, treatment of myelin basic protein-primed SJL/J lymph node cells with SB-331750 delayed the onset and reduced the severity of adoptively transferred experimental autoimmune encephalomyelitis (EAE). Therapeutic administration of SB-331750 reduced the severity of mild/moderate CIA and EAE. These results indicate that pharmacological inhibition of cathepsins attenuates CIA and EAE, potentially via inhibition of Ii processing, and subsequent Ag-induced T cell activation.


Subject(s)
Antigens, Differentiation, B-Lymphocyte/metabolism , Arthritis, Experimental/prevention & control , Azepines/administration & dosage , Benzofurans/administration & dosage , Cathepsins/antagonists & inhibitors , Collagen Type II/immunology , Encephalomyelitis, Autoimmune, Experimental/immunology , Histocompatibility Antigens Class II/metabolism , Leucine/analogs & derivatives , Lymphocyte Activation/drug effects , Protein Processing, Post-Translational/drug effects , Pyridines/administration & dosage , Animals , Arthritis, Experimental/enzymology , Arthritis, Experimental/immunology , Azepines/therapeutic use , Benzofurans/therapeutic use , Cattle , Cell Line, Tumor , Cells, Cultured , Cysteine Proteinase Inhibitors/administration & dosage , Cysteine Proteinase Inhibitors/therapeutic use , Encephalomyelitis, Autoimmune, Experimental/enzymology , Female , Humans , Leucine/administration & dosage , Leucine/therapeutic use , Lymphocyte Activation/immunology , Male , Mice , Mice, Inbred C57BL , Mice, Inbred DBA , Mice, Knockout , Protein Processing, Post-Translational/immunology , Pyridines/therapeutic use , Spleen/cytology , Spleen/drug effects , Spleen/enzymology
10.
J Invest Dermatol ; 127(7): 1605-14, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17330134

ABSTRACT

Near-naked hairless (Hr(N)) is a semi-dominant, spontaneous mutation that was suggested by allelism testing to be allelic with mouse Hairless (Hr). Hr(N) mice differ from other Hr mutants in that hair loss appears as the postnatal coat begins to emerge, rather than as an inability to regrow hair after the first catagen and that the mutation displays semi-dominant inheritance. We sequenced the Hr cDNA in Hr(N)/Hr(N) mice and characterized the pathological and molecular phenotypes to identify the basis for hair loss in this model. Hr(N)/Hr(N) mice exhibit dystrophic hairs that are unable to emerge consistently from the hair follicle, whereas Hr(N)/+ mice display a sparse coat of hair and a milder degree of follicular dystrophy than their homozygous littermates. DNA microarray analysis of cutaneous gene expression demonstrates that numerous genes are downregulated in Hr(N)/Hr(N) mice, primarily genes important for hair structure. By contrast, Hr expression is significantly increased. Sequencing the Hr-coding region, intron-exon boundaries, 5'- and 3'-untranslated region, and immediate upstream region did not reveal the underlying mutation. Therefore, Hr(N) does not appear to be an allele of Hr but may result from a mutation in a closely linked gene or from a regulatory mutation in Hr.


Subject(s)
Alopecia/genetics , Hair/growth & development , Mutation/genetics , Open Reading Frames/genetics , Transcription Factors/genetics , Alopecia/metabolism , Animals , DNA, Complementary/genetics , Disease Models, Animal , Female , Gene Expression Profiling , Hair/metabolism , Hair Follicle/growth & development , Hair Follicle/metabolism , Male , Mice , Mice, Hairless , Mice, Mutant Strains , Oligonucleotide Array Sequence Analysis , Phenotype , Sequence Analysis, DNA , Transcription Factors/metabolism
11.
Pulm Pharmacol Ther ; 20(1): 52-9, 2007.
Article in English | MEDLINE | ID: mdl-16406722

ABSTRACT

RATIONALE: Smokers who develop chronic obstructive pulmonary disease (COPD) have amplified inflammation within their lungs, involving selective tissue accumulation of neutrophils, macrophages and CD8+ T cells. CD11b (Mac-1, alphaMbeta(2)-integrin) is both a complement receptor (CR3) and a cell adhesion molecule present on the surface of peripheral blood leukocytes, and undergoes rapid surface upregulation from preformed cytoplasmic stores on activation. Cellular activation can also trigger chemotaxis and shape change, the activation itself being caused by the binding of chemokines to cell surface receptors. METHODS: We developed a method of whole blood flow cytometry to measure neutrophil and monocyte CD11b upregulation on CD16+ and CD14+ cells, employing staining with the nuclear dye LDS-751 immediately before flow cytometry. In addition we assessed neutrophil shape change by modified gated autofluorescence with forward scatter (GAFS), this being correlated with chemotactic responses. RESULTS: In smokers with COPD there was a lower maximal shape change for neutrophils in response to CXCL8 (IL-8) in comparison to healthy smokers (p=0.025), and a trend for lower expression of CD11b and shape change in response to CXCL1 (GRO-alpha). Neutrophils were found to predominantly express chemokine receptors CXCR1 and CXCR2 and respond to CXCL8 with CD11b upregulation, while monocytes express more CCR2 and upregulate CD11b preferentially to CCL2 (MCP-1). A CXCR2 antagonist (SB-656933) was found to inhibit neutrophil CD11b upregulation (IC50=260.7nM) and shape change (IC50=310.5nM) in COPD patients. CONCLUSIONS: Neutrophils and monocytes participate in inflammatory processes in a range of diseases. These whole blood assays can be employed to monitor activity in disease and perform in vitro and ex vivo assessment of chemokine receptor (CXCR) antagonists.


Subject(s)
CD11b Antigen/analysis , Flow Cytometry/methods , Monocytes/immunology , Neutrophils/immunology , Antigens, CD/analysis , Cell Shape , Chemokine CXCL11 , Chemokines, CXC/metabolism , Dose-Response Relationship, Drug , GPI-Linked Proteins , Humans , Interleukin-8/metabolism , Lipopolysaccharide Receptors/analysis , Monocytes/cytology , Monocytes/metabolism , Neutrophils/cytology , Neutrophils/metabolism , Pulmonary Disease, Chronic Obstructive/blood , Pulmonary Disease, Chronic Obstructive/diagnosis , Pulmonary Disease, Chronic Obstructive/immunology , Receptors, IgG/analysis , Receptors, Interleukin-8B/antagonists & inhibitors , Receptors, Interleukin-8B/metabolism , Reproducibility of Results , Up-Regulation/drug effects
12.
Hum Mol Genet ; 15(8): 1329-41, 2006 Apr 15.
Article in English | MEDLINE | ID: mdl-16537572

ABSTRACT

The mammalian Nell1 gene encodes a protein kinase C-beta1 (PKC-beta1) binding protein that belongs to a new class of cell-signaling molecules controlling cell growth and differentiation. Over-expression of Nell1 in the developing cranial sutures in both human and mouse induces craniosynostosis, the premature fusion of the growing cranial bone fronts. Here, we report the generation, positional cloning and characterization of Nell1(6R), a recessive, neonatal-lethal point mutation in the mouse Nell1 gene, induced by N-ethyl-N-nitrosourea. Nell1(6R) has a T-->A base change that converts a codon for cysteine into a premature stop codon [Cys(502)Ter], resulting in severe truncation of the predicted protein product and marked reduction in steady-state levels of the transcript. In addition to the expected alteration of cranial morphology, Nell1(6R) mutants manifest skeletal defects in the vertebral column and ribcage, revealing a hitherto undefined role for Nell1 in signal transduction in endochondral ossification. Real-time quantitative reverse transcription-PCR assays of 219 genes showed an association between the loss of Nell1 function and reduced expression of genes for extracellular matrix (ECM) proteins critical for chondrogenesis and osteogenesis. Several affected genes are involved in the human cartilage disorder Ehlers-Danlos Syndrome and other disorders associated with spinal curvature anomalies. Nell1(6R) mutant mice are a new tool for elucidating basic mechanisms in osteoblast and chrondrocyte differentiation in the developing skull and vertebral column and understanding how perturbations in the production of ECM proteins can lead to anomalies in these structures.


Subject(s)
Calcium-Binding Proteins/genetics , Extracellular Matrix Proteins/metabolism , Glycoproteins/genetics , Skull/abnormalities , Spine/abnormalities , Abnormalities, Drug-Induced/metabolism , Amino Acid Sequence , Animals , Base Sequence , Calcification, Physiologic/genetics , Calcium-Binding Proteins/metabolism , Cell Adhesion Molecules/metabolism , Chondrogenesis , Cysteine/genetics , Cysteine/metabolism , Female , Glycoproteins/metabolism , Male , Mice , Mice, Inbred Strains , Molecular Sequence Data , Osteogenesis , Point Mutation , Signal Transduction , Tyrosine/genetics , Tyrosine/metabolism
13.
Mamm Genome ; 16(9): 661-71, 2005 Sep.
Article in English | MEDLINE | ID: mdl-16245023

ABSTRACT

Chromosomal deletions have long been used as genetic tools in dissecting the functions of complex genomes, and new methodologies are still being developed to achieve the maximum coverage. In the mouse, where the chromosomal deletion coverage is far less extensive than that in Drosophila, substantial coverage of the genome with deletions is strongly desirable. This article reports the generation of three deletion complexes in the distal part of mouse Chromosome (Chr) 15. Chromosomal deletions were efficiently induced by X rays in embryonic stem (ES) cells around the Otoconin 90 (Oc 90), SRY-box-containing gene 10 (Sox 10), and carnitine palmitoyltransferase 1b (Cpt 1 b) loci. Deletions encompassing the Oc 90 and Sox 10 loci were transmitted to the offspring of the chimeric mice that were generated from deletion-bearing ES cells. Whereas deletion complexes encompassing the Sox 10 and the Cpt 1 b loci overlap each other, no overlap of the Oc 90 complex with the Sox 10 complex was found, possibly indicating the existence of a haploinsufficient gene located between Oc 90 and Sox 10. Deletion frequency and size induced by X rays depend on the selective locus, possibly reflecting the existence of haplolethal genes in the vicinity of these loci that yield fewer and smaller deletions. Deletions induced in ES cells by X rays vary in size and location of breakpoints, which makes them desirable for mapping and for functional genomics studies.


Subject(s)
Chromosome Deletion , Chromosomes, Mammalian/radiation effects , Mice/genetics , Stem Cells/radiation effects , X-Rays , Animals , Calcium-Binding Proteins , Chromosomes, Mammalian/genetics , DNA-Binding Proteins/genetics , Extracellular Matrix Proteins , Gene Components , Genomics/methods , Glycoproteins/genetics , High Mobility Group Proteins/genetics , In Situ Hybridization, Fluorescence , SOXE Transcription Factors , Transcription Factors/genetics
14.
Mamm Genome ; 16(8): 555-66, 2005 Aug.
Article in English | MEDLINE | ID: mdl-16180137

ABSTRACT

We have used the new high-throughput mutation-scanning technique temperature-gradient capillary electrophoresis (TGCE) for the identification of point mutations induced by N-ethyl-N-nitrosourea (ENU) in the mouse genome. TGCE detects the presence of heteroduplex molecules formed between a wild-type gene segment and the corresponding homologous segment containing an induced mutation or a naturally occurring single nucleotide polymorphism (SNP). Partially denatured heteroduplex molecules are resolved from homoduplexes by virtue of their differential mobilities during capillary electrophoresis conducted in a finely controlled temperature gradient. Simultaneous heteroduplex analysis of 96 amplicons ranging from 150 to 600 bp in size is achieved in approximately 45 min without the need for predetermining the melting profile of each fragment. Initially, we exploited known mouse mutations to develop TGCE protocols for analyzing unpurified PCR samples amplified from crude tail-DNA preparations. TGCE was then applied to the rapid identification of three new ENU-induced mutations recovered from regional mutagenesis screens of a segment of mouse Chromosome 7. Enzyme assays and quantitative reverse transcription-PCR (qRT-PCR) methods validated these new mutations. Our data demonstrate that rapid mutation scanning with TGCE, followed by sequence verification only of detected positives, is an efficient approach to the identification of point mutations in the mouse genome.


Subject(s)
Chromosomes, Mammalian/genetics , DNA Mutational Analysis , Ethylnitrosourea/pharmacology , Mutagenesis/drug effects , Point Mutation/genetics , Animals , Base Sequence , Chromatography, High Pressure Liquid , Electrophoresis, Capillary , Heteroduplex Analysis , Isoenzymes/genetics , L-Lactate Dehydrogenase/genetics , Mice , Mice, Inbred BALB C , Oxygenases/genetics , Phenotype , Serum Amyloid A Protein/genetics
15.
J Immunol ; 173(12): 7230-8, 2004 Dec 15.
Article in English | MEDLINE | ID: mdl-15585845

ABSTRACT

Neuromedin U (NmU), originally isolated from porcine spinal cord and later from other species, is a novel peptide that potently contracts smooth muscle. NmU interacts with two G protein-coupled receptors designated as NmU-1R and NmU-2R. This study demonstrates a potential proinflammatory role for NmU. In a mouse Th2 cell line (D10.G4.1), a single class of high affinity saturable binding sites for (125)I-labeled NmU (K(D) 364 pM and B(max) 1114 fmol/mg protein) was identified, and mRNA encoding NmU-1R, but not NmU-2R, was present. Competition binding analysis revealed equipotent, high affinity binding of NmU isopeptides to membranes prepared from D10.G4.1 cells. Exposure of these cells to NmU isopeptides resulted in an increase in intracellular Ca(2+) concentration (EC(50) 4.8 nM for human NmU). In addition, NmU also significantly increased the synthesis and release of cytokines including IL-4, IL-5, IL-6, IL-10, and IL-13. Studies using pharmacological inhibitors indicated that maximal NmU-evoked cytokine release required functional phospholipase C, calcineurin, MEK, and PI3K pathways. These data suggest a role for NmU in inflammation by stimulating cytokine production by T cells.


Subject(s)
Cytokines/metabolism , Membrane Proteins/physiology , Neuropeptides/physiology , Receptors, Neurotransmitter/physiology , Th2 Cells/immunology , Th2 Cells/metabolism , Animals , Calcineurin/physiology , Calcium/metabolism , Cell Line , Clone Cells , Cytokines/antagonists & inhibitors , Dogs , Estrenes/pharmacology , Humans , Interleukins/antagonists & inhibitors , Interleukins/metabolism , MAP Kinase Signaling System/immunology , Membrane Proteins/biosynthesis , Membrane Proteins/genetics , Mice , Mitogen-Activated Protein Kinases/metabolism , Neuropeptides/metabolism , Phosphatidylinositol 3-Kinases/physiology , Pyrrolidinones/pharmacology , Rats , Receptors, Interleukin-4/physiology , Receptors, Neurotransmitter/biosynthesis , Receptors, Neurotransmitter/genetics , Signal Transduction/immunology , Swine , Type C Phospholipases/antagonists & inhibitors , Type C Phospholipases/physiology
16.
Genetics ; 167(2): 889-95, 2004 Jun.
Article in English | MEDLINE | ID: mdl-15238537

ABSTRACT

Chromosomal inversions are valuable genetic tools for mutagenesis screens, where appropriately marked inversions can be used as balancer chromosomes to recover and maintain mutations in the corresponding chromosomal region. For any inversion to be effective as a balancer, it should exhibit both dominant and recessive visible traits; ideally the recessive trait should be a fully penetrant lethality in which inversion homozygotes die before birth. Unfortunately, most inversions recovered by classical radiation or chemical mutagenesis techniques do not have an overt phenotype in either the heterozygous or the homozygous state. However, they can be modified by relatively simple procedures to make them suitable as an appropriately marked balancer. We have used homologous recombination to modify, in embryonic stem cells, the recessive-lethal In(15)21Rk inversion to endow it with a dominant-visible phenotype. Several ES cell lines were derived from inversion heterozygotes, and a keratin-14 (K14) promoter-driven agouti minigene was introduced onto the inverted chromosome 15 in the ES cells by gene targeting. Mice derived from the targeted ES cells carry the inverted chromosome 15 and, at the same time, exhibit lighter coat color on their ears and tails, making this modified In(15)21Rk useful as a balancer for proximal mouse chromosome 15.


Subject(s)
Chromosome Inversion/genetics , Chromosome Mapping , Animals , Exons/genetics , Genetic Engineering , Heterozygote , Homozygote , Mice , Mutagenesis , Mutagenesis, Insertional
17.
Sci Eng Ethics ; 10(2): 311-24, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15152857

ABSTRACT

Previous research indicates that students in engineering self-report cheating in college at higher rates than those in most other disciplines. Prior work also suggests that participation in one deviant behavior is a reasonable predictor of future deviant behavior. This combination of factors leads to a situation where engineering students who frequently participate in academic dishonesty are more likely to make unethical decisions in professional practice. To investigate this scenario, we propose the hypotheses that (1) there are similarities in the decision-making processes used by engineering students when considering whether or not to participate in academic and professional dishonesty, and (2) prior academic dishonesty by engineering students is an indicator of future decisions to act dishonestly. Our sample consisted of undergraduate engineering students from two technically-oriented private universities. As a group, the sample reported working full-time an average of six months per year as professionals in addition to attending classes during the remaining six months. This combination of both academic and professional experience provides a sample of students who are experienced in both settings. Responses to open-ended questions on an exploratory survey indicate that students identify common themes in describing both temptations to cheat or to violate workplace policies and factors which caused them to hesitate in acting unethically, thus supporting our first hypothesis and laying the foundation for future surveys having forced-choice responses. As indicated by the responses to forced-choice questions for the engineering students surveyed, there is a relationship between self-reported rates of cheating in high school and decisions to cheat in college and to violate workplace policies; supporting our second hypothesis. Thus, this exploratory study demonstrates connections between decision-making about both academic and professional dishonesty. If better understood, these connections could lead to practical approaches for encouraging ethical behavior in the academic setting, which might then influence future ethical decision-making in workplace settings.


Subject(s)
Behavior/ethics , Deception , Professional Practice/ethics , Engineering/education , Engineering/ethics , Humans , Professional Practice/statistics & numerical data , Surveys and Questionnaires , United States
18.
Proc Natl Acad Sci U S A ; 100(14): 8360-5, 2003 Jul 08.
Article in English | MEDLINE | ID: mdl-12832620

ABSTRACT

Recessive N-ethyl-N-nitrosourea (ENU)-induced mutations recovered at the fitness-1 (fit1) locus in mouse chromosome 7 cause hematopoietic abnormalities, growth retardation, and shortened life span, with varying severity of the defects in different alleles. Abnormal iron distribution and metabolism and frequent scoliosis have also been associated with an allele of intermediate severity (fit14R). We report that fit14R, as well as the most severe fit15R allele, are nonsense point mutations in the mouse ortholog of the human phosphatidylinositol-binding clathrin assembly protein (PICALM) gene, whose product is involved in clathrin-mediated endocytosis. A variety of leukemias and lymphomas have been associated with translocations that fuse human PICALM with the putative transcription factor gene AF10. The Picalmfit1-5R and Picalmfit1-4R mutations are splice-donor alterations resulting in transcripts that are less abundant than normal and missing exons 4 and 17, respectively. These exon deletions introduce premature termination codons predicted to truncate the proteins near the N and C termini, respectively. No mutations in the genes encoding Picalm, clathrin, or components of the adaptor protein complex 2 (AP2) have been previously described in which the suite of disorders present in the Picalmfit1 mutant mice is apparent. These mutants thus provide unique models for exploring how the endocytic function of mouse Picalm and the transport processes mediated by clathrin and the AP2 complex contribute to normal hematopoiesis, iron metabolism, and growth.


Subject(s)
Hematopoiesis/genetics , Iron/metabolism , Mice, Mutant Strains/genetics , Monomeric Clathrin Assembly Proteins/genetics , RNA Splice Sites/genetics , Alleles , Amino Acid Sequence , Animals , Base Sequence , Codon, Nonsense , Endocytosis , Exons/genetics , Mice , Mice, Inbred BALB C , Molecular Sequence Data , Monomeric Clathrin Assembly Proteins/deficiency , Monomeric Clathrin Assembly Proteins/physiology , Mutation, Missense , Point Mutation
19.
Proc Natl Acad Sci U S A ; 99(2): 844-9, 2002 Jan 22.
Article in English | MEDLINE | ID: mdl-11792855

ABSTRACT

Eleven independent, recessive, N-ethyl-N-nitrosourea-induced mutations that map to a approximately 1- to 2-cM region of mouse chromosome (Chr) 7 homologous to human Chr 11p14-p15 were recovered from a screen of 1,218 gametes. These mutations were initially identified in a hemizygous state opposite a large p-locus deletion and subsequently were mapped to finer genomic intervals by crosses to a panel of smaller p deletions. The 11 mutations also were classified into seven complementation groups by pairwise crosses. Four complementation groups were defined by seven prenatally lethal mutations, including a group (l7R3) comprised of two alleles of obvious differing severity. Two allelic mutations (at the psrt locus) result in a severe seizure and runting syndrome, but one mutation (at the fit2 locus) results in a more benign runting phenotype. This experiment has added seven loci, defined by phenotypes of presumed point mutations, to the genetic map of a small (1-2 cM) region of mouse Chr 7 and will facilitate the task of functional annotation of DNA sequence and transcription maps both in the mouse and the corresponding human 11p14-p15 homology region.


Subject(s)
Chromosome Mapping , Chromosomes, Human, Pair 11/genetics , DNA/genetics , Mutation , Animals , Crosses, Genetic , DNA Mutational Analysis , Ethylnitrosourea/toxicity , Female , Gene Deletion , Genes, Lethal , Genes, Recessive , Genetic Complementation Test , Humans , Male , Mice , Mice, Mutant Strains , Mutagenesis , Mutagens/toxicity , Phenotype , Species Specificity
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