Pervasive gaps in Amazonian ecological research.

Biodiversity loss is one of the main challenges of our time,1,2 and attempts to address it require a clear understanding of how ecological communities respond to environmental change across time and space.3,4 While the increasing availability of global databases on ecological communities has advanced our knowledge of biodiversity sensitivity to environmental changes,5,6,7 vast areas of the tropics remain understudied.8,9,10,11 In the American tropics, Amazonia stands out as the world's most diverse rainforest and the primary source of Neotropical biodiversity,12 but it remains among the least known forests in America and is often underrepresented in biodiversity databases.13,14,15 To worsen this situation, human-induced modifications16,17 may eliminate pieces of the Amazon's biodiversity puzzle before we can use them to understand how ecological communities are responding. To increase generalization and applicability of biodiversity knowledge,18,19 it is thus crucial to reduce biases in ecological research, particularly in regions projected to face the most pronounced environmental changes. We integrate ecological community metadata of 7,694 sampling sites for multiple organism groups in a machine learning model framework to map the research probability across the Brazilian Amazonia, while identifying the region's vulnerability to environmental change. 15%-18% of the most neglected areas in ecological research are expected to experience severe climate or land use changes by 2050. This means that unless we take immediate action, we will not be able to establish their current status, much less monitor how it is changing and what is being lost.

An approach to assess data-less small-scale fisheries: examples from Congo rivers.

Small-scale fisheries (SSF) account for much of the global fish catch, but data to assess them often do not exist, impeding assessments of their historical dynamics and status. Here, we propose an approach to assess 'data-less' SSF using local knowledge to produce data, life history theory to describe their historical multispecies dynamics, and length-based reference points to evaluate stock status. We demonstrate use of this approach in three data-less SSFs of the Congo Basin. Fishers' recalls of past fishing events indicated fish catch declined by 65-80% over the last half-century. Declines in and depletion of many historically important species reduced the diversity of exploited species, making the species composition of the catch more homogenous in recent years. Length-at-catch of 11 of the 12 most important species were below their respective lengths-at-maturity and optimal lengths (obtained from Fishbase) in recent years, indicating overfishing. The most overfished species were large-bodied and found in the Congo mainstem. These results show the approach can suitably assess data-less SSF. Fishers' knowledge produced data at a fraction of the cost and effort of collecting fisheries landings data. Historical and current data on fish catch, length-at-catch, and species diversity can inform management and restoration efforts to curb shifting baselines of these fisheries. Classification of stock status allows prioritizing management efforts. The approach is easy to apply and generates intuitive results, having potential to complement the toolkits of researchers and managers working in SSF and engage stakeholders in decision-making processes. Supplementary Information: The online version contains supplementary material available at 10.1007/s11160-023-09770-x.

-I fish, therefore I monitor: Participatory monitoring to assess inland small-scale fisheries.

Analysis of small-scale inland fisheries (SSIFs) is often highly dispersed and tends not reflect the true magnitude of their contribution to society. This is partly due to the insufficient attention given to this sector by the relevant authorities, in addition to its highly diverse characteristics, with complex patterns of operation in a wide range of systems, often in remote areas. Here, by integrating fishers as participatory fishery monitors, we provide fishery-dependent estimates of yields, the biological attributes of the fish species, and the spatiotemporal dynamics of the fisheries of lakes on the floodplain of the São Francisco basin in northeastern Brazil. As the fishers were willing participates in the monitoring, the results revealed well-structured artisanal fishing activities, with the lake system providing high-profile fish harvests from both monthly and annual perspectives. The spatial distribution of fishing effort reflected the adaptation of the fishers to the flood cycle of the river, in order to maintain high fishery productivity throughout the year. The results also indicate that participatory monitoring can help to overcome knowledge gaps and provide a database that is readily applicable to management needs at both local and regional scales. As Brazil is one few world's nations that no longer have national fishing monitoring program, participatory monitoring represents a low-cost solution for the credible and useful data on small-scale fisheries. It would thus appear to be extremely worthwhile to invest in the empowerment of communities in order to overcome the historic vulnerability of productive sector and the food security of the populations that depend on these fisheries.

Institutional effects on ecological outcomes of community-based management of fisheries in the Amazon.

Communities throughout the globe are increasingly being given the responsibility of resource management, making it necessary to understand the factors that lead to success in community-based management (CBM). Here, we assessed whether and how institutional design principles affect the ecological outcomes of CBM schemes for Arapaima sp., an important common-pool fishery resource of the Amazon Basin. We quantified the degree of presence of Ostrom's (Science 325:419-422, 1990) institutional design principles in 83 communities using a systematic survey, and quantitatively linked the design principles to a measure of ecological outcome (arapaima density) in a subset of 39 communities to assess their influence. To understand regional patterns of institutional capacity for CBM, we evaluated the degree of presence of each principle in all 83 communities. The principle scores were positively related to arapaima density in the 39 CBM schemes, explaining about half of the variation. Design principles related to defined boundaries and graduated sanctions exerted the strongest influence on the capacity of CBM to increase arapaima density. The degree to which most principles were present in all 83 communities was generally low, however, with the two most influential principles (defined boundaries and graduated sanctions) being the least present of all. Although the roles of the other principles (management rules, conflict resolution, collective action, and monitoring systems) are probably important, our results indicate that efforts aimed at strengthening the presence of defined boundaries and graduated sanctions in communities hold promise to improve the effectiveness of arapaima CBM regionally.

Large-scale Degradation of the Tocantins-Araguaia River Basin.

The Tocantins-Araguaia Basin is one of the largest river systems in South America, located entirely within Brazilian territory. In the last decades, capital-concentrating activities such as agribusiness, mining, and hydropower promoted extensive changes in land cover, hydrology, and environmental conditions. These changes are jeopardizing the basin's biodiversity and ecosystem services. Threats are escalating as poor environmental policies continue to be formulated, such as environmentally unsustainable hydropower plants, large-scale agriculture for commodity production, and aquaculture with non-native fish. If the current model persists, it will deepen the environmental crisis in the basin, compromising broad conservation goals and social development in the long term. Better policies will require thought and planning to minimize growing threats and ensure the basin's sustainability for future generations.

Integrated terrestrial-freshwater planning doubles conservation of tropical aquatic species.

Conservation initiatives overwhelmingly focus on terrestrial biodiversity, and little is known about the freshwater cobenefits of terrestrial conservation actions. We sampled more than 1500 terrestrial and freshwater species in the Amazon and simulated conservation for species from both realms. Prioritizations based on terrestrial species yielded on average just 22% of the freshwater benefits achieved through freshwater-focused conservation. However, by using integrated cross-realm planning, freshwater benefits could be increased by up to 600% for a 1% reduction in terrestrial benefits. Where freshwater biodiversity data are unavailable but aquatic connectivity is accounted for, freshwater benefits could still be doubled for negligible losses of terrestrial coverage. Conservation actions are urgently needed to improve the status of freshwater species globally. Our results suggest that such gains can be achieved without compromising terrestrial conservation goals.

The Influence of Forests on Freshwater Fish in the Tropics: A Systematic Review.

Tropical forests influence freshwater fish through multiple pathways, only some of which are well documented. We systematically reviewed the literature to assess the current state of knowledge on forests and freshwater fish in the tropics. The existing evidence is mostly concentrated in the neotropics. The majority of studies provided evidence that fish diversity was higher where there was more forest cover; this was related to the greater heterogeneity of resources in forested environments that could support a wider range of species. Studies quantifying fish abundance (or biomass) showed mixed relationships with forest cover, depending on species-specific habitat preferences. We identify the key challenges limiting our current understanding of the forest-fish nexus and provide recommendations for future research to address these knowledge gaps. A clear understanding of the functional pathways in forest-freshwater ecosystems can improve evidence-based policy development concerned with deforestation, biodiversity conservation, and food insecurity in the tropics.

Floodplain land cover affects biomass distribution of fish functional diversity in the Amazon River.

Land-cover change often shifts the distribution of biomass in animal communities. However, the effects of land-cover changes on functional diversity remain poorly understood for many organisms and ecosystems, particularly, for floodplains. We hypothesize that the biomass distribution of fish functional diversity in floodplains is associated with land cover, which would imply that fish traits affect behavioral and/or demographic responses to gradients of land cover. Using data from surveys of 462 habitats covering a range of land-cover conditions in the Amazon River floodplain, we fitted statistical models to explain landscape-scale variation in functional diversity and biomass of all fish species as well as subsets of species possessing different functional traits. Forest cover was positively associated with fish biomass and the strength of this relationship varied according to functional groups defined by life history, trophic, migration, and swimming-performance/microhabitat-use traits. Forty-two percent of the functional groups, including those inferred to have enhanced feeding opportunities, growth, and/or reproductive success within forested habitats, had greater biomass where forest cover was greater. Conversely, the biomass of other functional groups, including habitat generalists and those that directly exploit autochthonous food resources, did not vary significantly in relation to forest cover. The niche space occupied by local assemblages (functional richness) and dispersion in trait abundances (functional dispersion) tended to increase with forest cover. Our study supports the expectation that deforestation in the Amazon River floodplain affects not only fish biomass but also functional diversity, with some functional groups being particularly vulnerable.

Response of Prochilodus nigricans to flood pulse variation in the central Amazon.

The influence of the flood pulse on fish populations has been posited, but infrequently tested or quantified. Here, we tested the effect of habitat on population size, using Prochilodus nigricans as a case study species. Floodplain habitat was based on the littoral zone area occupied by P. nigricans to feed. The magnitude of this habitat in each hydrological year, the moving littoral (ML), was expressed as the sum of daily littoral areas during the advancing flood pulse, using satellite-based passive microwave data. Annual population size was estimated by age class, using a dynamic age-structured model (MULTIFAN-CL) based on catches, effort and fish length frequencies from the Manaus-based fishery over 12.75 years. The principal null hypothesis was that the ML, using three lag times, had no effect on population size of a single age class of P. nigricans. The population size at 29 months of age was positively related (p = 0.00030) to floodplain habitat (ML) earlier in the same year, when the fish were 21-27 months old. The result implies a density-dependent relationship for the population with respect to its feeding habitat. Potential mechanisms governed by flood pulse variation and habitat quality for this and other species using floodplain habitats are discussed.

The future of hyperdiverse tropical ecosystems.

The tropics contain the overwhelming majority of Earth's biodiversity: their terrestrial, freshwater and marine ecosystems hold more than three-quarters of all species, including almost all shallow-water corals and over 90% of terrestrial birds. However, tropical ecosystems are also subject to pervasive and interacting stressors, such as deforestation, overfishing and climate change, and they are set within a socio-economic context that includes growing pressure from an increasingly globalized world, larger and more affluent tropical populations, and weak governance and response capacities. Concerted local, national and international actions are urgently required to prevent a collapse of tropical biodiversity.

Temporal and Longitudinal Mercury Trends in Burbot (Lota lota) in the Russian Arctic.

Current understanding of mercury (Hg) dynamics in the Arctic is hampered by a lack of data in the Russian Arctic region, which comprises about half of the entire Arctic watershed. This study quantified temporal and longitudinal trends in total mercury (THg) concentrations in burbot (Lota lota) in eight rivers of the Russian Arctic between 1980 and 2001, encompassing an expanse of 118 degrees of longitude. Burbot THg concentrations declined by an average of 2.6% annually across all eight rivers during the study period, decreasing by 39% from 0.171 µg g-1 wet weight (w.w.) in 1980 to 0.104 µg g-1 w.w. in 2001. THg concentrations in burbot also declined by an average of 1.8% per 10° of longitude from west to east across the study area between 1988 and 2001. These results, in combination with those of previous studies, suggest that Hg trends in Arctic freshwater fishes before 2001 were spatially and temporally heterogeneous, as those in the North American Arctic were mostly increasing while those in the Russian Arctic were mostly decreasing. It is suggested that Hg trends in Arctic animals may be influenced by both depositional and postdepositional processes.

Unravelling the life history of Amazonian fishes through otolith microchemistry.

Amazonian fishes employ diverse migratory strategies, but the details of these behaviours remain poorly studied despite numerous environmental threats and heavy commercial exploitation of many species. Otolith microchemistry offers a practical, cost-effective means of studying fish life history in such a system. This study employed a multi-method, multi-elemental approach to elucidate the migrations of five Amazonian fishes: two 'sedentary' species (Arapaima sp. and Plagioscion squamosissimus), one 'floodplain migrant' (Prochilodus nigricans) and two long-distance migratory catfishes (Brachyplatystoma rousseauxii and B. filamentosum). The Sr : Ca and Zn : Ca patterns in Arapaima were consistent with its previously observed sedentary life history, whereas Sr : Ca and Mn : Ca indicated that Plagioscion may migrate among multiple, chemically distinct environments during different life-history stages. Mn : Ca was found to be potentially useful as a marker for identifying Prochilodus's transition from its nursery habitats into black water. Sr : Ca and Ba : Ca suggested that B. rousseauxii resided in the Amazon estuary for the first 1.5-2 years of life, shown by the simultaneous increase/decrease of otolith Sr : Ca/Ba : Ca, respectively. Our results further suggested that B. filamentosum did not enter the estuary during its life history. These results introduce what should be a productive line of research desperately needed to better understand the migrations of these unique and imperilled fishes.

Large-scale degradation of Amazonian freshwater ecosystems.

Hydrological connectivity regulates the structure and function of Amazonian freshwater ecosystems and the provisioning of services that sustain local populations. This connectivity is increasingly being disrupted by the construction of dams, mining, land-cover changes, and global climate change. This review analyzes these drivers of degradation, evaluates their impacts on hydrological connectivity, and identifies policy deficiencies that hinder freshwater ecosystem protection. There are 154 large hydroelectric dams in operation today, and 21 dams under construction. The current trajectory of dam construction will leave only three free-flowing tributaries in the next few decades if all 277 planned dams are completed. Land-cover changes driven by mining, dam and road construction, agriculture and cattle ranching have already affected ~20% of the Basin and up to ~50% of riparian forests in some regions. Global climate change will likely exacerbate these impacts by creating warmer and dryer conditions, with less predictable rainfall and more extreme events (e.g., droughts and floods). The resulting hydrological alterations are rapidly degrading freshwater ecosystems, both independently and via complex feedbacks and synergistic interactions. The ecosystem impacts include biodiversity loss, warmer stream temperatures, stronger and more frequent floodplain fires, and changes to biogeochemical cycles, transport of organic and inorganic materials, and freshwater community structure and function. The impacts also include reductions in water quality, fish yields, and availability of water for navigation, power generation, and human use. This degradation of Amazonian freshwater ecosystems cannot be curbed presently because existing policies are inconsistent across the Basin, ignore cumulative effects, and overlook the hydrological connectivity of freshwater ecosystems. Maintaining the integrity of these freshwater ecosystems requires a basinwide research and policy framework to understand and manage hydrological connectivity across multiple spatial scales and jurisdictional boundaries.

Flood pulse effects on multispecies fishery yields in the Lower Amazon.

Seasonally fluctuating water levels, known as 'flood pulses', control the productivity of large river fisheries, but the extent and mechanisms through which flood pulses affect fishery yields are poorly understood. To quantify and better understand flood pulse effects on fishery yields, this study applied regression techniques to a hydrological and fishery record (years 1993-2004) for 42 species of the Amazon River floodplains. Models based on indices of fishing effort, high waters and low waters explained most of the interannual variability in yields (R (2)=0.8). The results indicated that high and low waters in any given year affected fishery yields two and three years later through changes in fish biomass available for harvesting, contributing 18% of the explained variability in yields. Fishing effort appeared to amplify high and low water effects by changing in direct proportion to changes in fish biomass available for harvesting, contributing 62% of the explained variability in yields. Although high waters are generally expected to have greater relative influence on fishery yields than low waters, high and low waters exerted equal forcing on these Amazonian river-floodplain fishery yields. These findings highlight the complex dynamics of river-floodplain fisheries in relation to interannual variability in flood pulses.

Slowing Amazon deforestation through public policy and interventions in beef and soy supply chains.

The recent 70% decline in deforestation in the Brazilian Amazon suggests that it is possible to manage the advance of a vast agricultural frontier. Enforcement of laws, interventions in soy and beef supply chains, restrictions on access to credit, and expansion of protected areas appear to have contributed to this decline, as did a decline in the demand for new deforestation. The supply chain interventions that fed into this deceleration are precariously dependent on corporate risk management, and public policies have relied excessively on punitive measures. Systems for delivering positive incentives for farmers to forgo deforestation have been designed but not fully implemented. Territorial approaches to deforestation have been effective and could consolidate progress in slowing deforestation while providing a framework for addressing other important dimensions of sustainable development.

Low and declining mercury in arctic Russian rivers.

Mercury (Hg) dynamics in the Arctic is receiving increasing attention, but further understanding is limited by a lack of studies in Russia, which encompasses the majority of the pan-Arctic watershed. This study reports Hg concentrations and trends in burbot (Lota lota) from the Lena and Mezen Rivers in the Russian Arctic, and assesses the extent to which they differ from those found in burbot in arctic rivers elsewhere. Mercury concentrations in burbot in the Lena and Mezen Rivers were found to be generally lower than in 23 other locations, most of which are in the Mackenzie River Basin (Canada). Mercury concentrations in burbot in the Lena and Mezen Rivers also were found to have been declining at an annual rate of 2.3% while they have been increasing in the Mackenzie River Basin at annual rates between 2.2 and 5.1% during roughly the same time period. These contrasting patterns in Hg in burbot across the pan-Arctic may be explained by geographic heterogeneity in controlling processes, including riverine particulate material loads, historically changing atmospheric inputs, postdepositional processes, and climate change impacts.

The science of ecological economics: a content analysis of Ecological Economics, 1989-2004.

The Ecological Economics journal is a primary source for inquiry on ecological economics and sustainability. To explore the scholarly pursuit of ecological economics, we conducted a content analysis of 200 randomly sampled research, survey, and methodological articles published in Ecological Economics during the 15-year period of 1989-2004. Results of the analysis were used to investigate facets of transdisciplinarity within the journal. A robust qualitative approach was used to gather and examine data to identify themes representing substantive content found within the span of sampled journal papers. The extent to which each theme was represented was counted as well as additional data, such as author discipline, year published, etc. Four main categories were revealed: (1) foundations (self-reflexive themes stemming from direct discussions about ecological economics); (2) human systems, represented by the themes of values, social indicators of well-being, intergenerational distribution, and equity; (3) biophysical systems, including themes, such as carrying capacity and scarcity, energy, and resource use, relating directly to the biophysical aspects of systems; and (4) policy and management encompassing themes of development, growth, trade, accounting, and valuation, as well as institutional structures and management. The results provide empirical evidence for discussing the future direction of ecological economic efforts.

Lessons from integrating fishers of arapaima in small-scale fisheries management at the Mamirauá Reserve, Amazon.

Fishers and small-scale fisheries worldwide have been marginalized historically. Now it is clear that integrating fishers in management processes is key to resource conservation, but it is less clear how to do it. Here, based on a literature review and new information, we present and analyze a case in which the participation of fishers in the management process was crucial in recovering an overexploited small-scale fishery for the pirarucu (Arapaima spp.) in the Amazon Basin, Brazil. In 8 years of experimental management, from 1999 to 2006, the population of pirarucu increased 9-fold (from about 2200 to 20,650 individuals), harvest quotas increased 10-fold (from 120 to 1249 individuals), and fishers' participation in the management process increased and they benefited from increased monetary returns. Additionally, the number of communities conducting the management scheme increased from 4 in 1999 to 108 in 2006, following the demands of fishers and regional government agencies. Based on our analysis, we suggest that the participation of fishers in the management of other small-scale fisheries in the world can be improved by focusing on (1) applying the knowledge and skills of fishers in resource monitoring and management, (2) bridging knowledge systems among all involved stakeholders, (3) collaborating with fishers that are interested in, and capable of conducting, resource conservation schemes, and (4) conducting management under conditions of uncertainty.