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1.
Adv Med Educ Pract ; 15: 451-459, 2024.
Article in English | MEDLINE | ID: mdl-38826693

ABSTRACT

Introduction: Learning laparoscopy (LAP) is challenging and requires different skills to conventional open surgery. There is a recognized need for a standardized laparoscopic training framework within urology to overcome these difficulties and to shift learning curve from patient to skills laboratory. Simulation-based training has been widely commented, but implementation in real day practice is lacking. We present our "LAP training program for residents". Material: Between 2017 and 2022, 11 residents participated in our self-designed program: Theoretical: (Moodle platform) basic knowledge and multimedia content for initiation into LAP. Evaluated through online exam. Practical: exercises for LAP skills acquisition were proposed and encouraged residents' practice in a box trainer available and experimental surgery sessions on a porcine model. On-site E-BLUS (European Basic Laparoscopic Urologic Skills) examination was performed annually. Feedback was obtained through an anonymous online survey. Results: All residents positively evaluated the program. Theoretical: 82% passed the online exam. The most valued topics: LAP in special clinical situations, complications, instruments, and configuration of the operating room (OR). Practical: all residents increased dry-lab box practices. A total of 23 experimental surgical sessions were carried out. For 64%, simulation in the experimental OR was a necessary complement to achieve laparoscopic skills and allowed them to feel more confident. Forty-five percent considered it essential to improve their surgical technique. E-BLUS evaluation was valued as a means to achieve dexterity and safer surgery by 90%. Reduction in time and errors were observed through time, although only 2 passed the E-BLUS. Conclusion: Our program for learning LAP includes the acquisition of knowledge, training of basic skills and surgical technique in a safe environment, as well as an objective evaluation. Encouraged practice of basic skills and surgical technique simulation and improved objective evaluation. It is structured, reproducible, systematic and has been positively valued, although it requires commitment for success.

2.
NAR Genom Bioinform ; 4(3): lqac067, 2022 Sep.
Article in English | MEDLINE | ID: mdl-36128425

ABSTRACT

Alternative splicing (AS) plays a key role in cancer: all its hallmarks have been associated with different mechanisms of abnormal AS. The improvement of the human transcriptome annotation and the availability of fast and accurate software to estimate isoform concentrations has boosted the analysis of transcriptome profiling from RNA-seq. The statistical analysis of AS is a challenging problem not yet fully solved. We have included in EventPointer (EP), a Bioconductor package, a novel statistical method that can use the bootstrap of the pseudoaligners. We compared it with other state-of-the-art algorithms to analyze AS. Its performance is outstanding for shallow sequencing conditions. The statistical framework is very flexible since it is based on design and contrast matrices. EP now includes a convenient tool to find the primers to validate the discoveries using PCR. We also added a statistical module to study alteration in protein domain related to AS. Applying it to 9514 patients from TCGA and TARGET in 19 different tumor types resulted in two conclusions: i) aberrant alternative splicing alters the relative presence of Protein domains and, ii) the number of enriched domains is strongly correlated with the age of the patients.

3.
Cancers (Basel) ; 14(13)2022 Jul 01.
Article in English | MEDLINE | ID: mdl-35805023

ABSTRACT

Recent functional genomic screens­such as CRISPR-Cas9 or RNAi screening­have fostered a new wave of targeted treatments based on the concept of synthetic lethality. These approaches identified LEthal Dependencies (LEDs) by estimating the effect of genetic events on cell viability. The multiple-hypothesis problem is related to a large number of gene knockouts limiting the statistical power of these studies. Here, we show that predictions of LEDs from functional screens can be dramatically improved by incorporating the "HUb effect in Genetic Essentiality" (HUGE) of gene alterations. We analyze three recent genome-wide loss-of-function screens­Project Score, CERES score and DEMETER score­identifying LEDs with 75 times larger statistical power than using state-of-the-art methods. Using acute myeloid leukemia, breast cancer, lung adenocarcinoma and colon adenocarcinoma as disease models, we validate that our predictions are enriched in a recent harmonized knowledge base of clinical interpretations of somatic genomic variants in cancer (AUROC > 0.87). Our approach is effective even in tumors with large genetic heterogeneity such as acute myeloid leukemia, where we identified LEDs not recalled by previous pipelines, including FLT3-mutant genotypes sensitive to FLT3 inhibitors. Interestingly, in-vitro validations confirm lethal dependencies of either NRAS or PTPN11 depending on the NRAS mutational status. HUGE will hopefully help discover novel genetic dependencies amenable for precision-targeted therapies in cancer. All the graphs showing lethal dependencies for the 19 tumor types analyzed can be visualized in an interactive tool.

4.
J Environ Manage ; 281: 111871, 2021 Mar 01.
Article in English | MEDLINE | ID: mdl-33385896

ABSTRACT

Manganese ferrite solid nanospheres (MSNs) were prepared by a solvothermal method and calcined at various temperatures up to 500 °C. Their surface area, morphology, particle size, weight change during calcination, surface coordination number of metal ions, oxidation state, crystal structure, crystallite size, and magnetic properties were studied. The MSNs were used as catalysts to activate potassium peroxymonosulfate (PMS) for the oxidative degradation of para-nitrophenol (PNP) from water and for the oxidation of n-C7 asphaltenes in flowing air at atmospheric (0.084 MPa) and high pressure (6 MPa). Mn was in oxidation states (II) and (III) at calcination temperature of 200 °C, and the crystalline structure corresponded to jacobsite. Mn was in oxidation states (III) and (IV) at 350 °C and in oxidation states (II), (III), and (IV) at 500 °C, and the crystalline structure was maghemite at both temperatures. MSN catalysts generated hydroxyl (HO·) and sulfate (SO4·-) radicals in the PMS activation and generated HO· radicals in the n-C7 asphaltene oxidation. In both reactions, the best catalyst was MSN calcined at 350 °C (MSN350), because it has the highest concentration of Mn(III) in octahedral B sites, which are directly exposed to the catalyst surface, and the largest total and lattice oxygen contents, favoring oxygen mobility for Mn redox cycles. The MSN350 sample reduces the decomposition temperature of n-C7 asphaltenes from 430 to 210 °C at 0.084 MPa and from 370 to 200 °C at 6.0 MPa. In addition, it reduces the effective activation energy by approximately 77.6% in the second combustion (SC) region, where high-temperature oxidation reactions take place.


Subject(s)
Nanospheres , Catalysis , Nitrophenols , Oxidation-Reduction , Peroxides , Polycyclic Aromatic Hydrocarbons
5.
Cancers (Basel) ; 12(7)2020 Jul 07.
Article in English | MEDLINE | ID: mdl-32645997

ABSTRACT

The development of predictive biomarkers of response to targeted therapies is an unmet clinical need for many antitumoral agents. Recent genome-wide loss-of-function screens, such as RNA interference (RNAi) and CRISPR-Cas9 libraries, are an unprecedented resource to identify novel drug targets, reposition drugs and associate predictive biomarkers in the context of precision oncology. In this work, we have developed and validated a large-scale bioinformatics tool named DrugSniper, which exploits loss-of-function experiments to model the sensitivity of 6237 inhibitors and predict their corresponding biomarkers of sensitivity in 30 tumor types. Applying DrugSniper to small cell lung cancer (SCLC), we identified genes extensively explored in SCLC, such as Aurora kinases or epigenetic agents. Interestingly, the analysis suggested a remarkable vulnerability to polo-like kinase 1 (PLK1) inhibition in CREBBP-mutant SCLC cells. We validated this association in vitro using four mutated and four wild-type SCLC cell lines and two PLK1 inhibitors (Volasertib and BI2536), confirming that the effect of PLK1 inhibitors depended on the mutational status of CREBBP. Besides, DrugSniper was validated in-silico with several known clinically-used treatments, including the sensitivity of Tyrosine Kinase Inhibitors (TKIs) and Vemurafenib to FLT3 and BRAF mutant cells, respectively. These findings show the potential of genome-wide loss-of-function screens to identify new personalized therapeutic hypotheses in SCLC and potentially in other tumors, which is a valuable starting point for further drug development and drug repositioning projects.

6.
Sci Rep ; 10(1): 1069, 2020 01 23.
Article in English | MEDLINE | ID: mdl-31974522

ABSTRACT

The advent of RNA-seq technologies has switched the paradigm of genetic analysis from a genome to a transcriptome-based perspective. Alternative splicing generates functional diversity in genes, but the precise functions of many individual isoforms are yet to be elucidated. Gene Ontology was developed to annotate gene products according to their biological processes, molecular functions and cellular components. Despite a single gene may have several gene products, most annotations are not isoform-specific and do not distinguish the functions of the different proteins originated from a single gene. Several approaches have tried to automatically annotate ontologies at the isoform level, but this has shown to be a daunting task. We have developed ISOGO (ISOform + GO function imputation), a novel algorithm to predict the function of coding isoforms based on their protein domains and their correlation of expression along 11,373 cancer patients. Combining these two sources of information outperforms previous approaches: it provides an area under precision-recall curve (AUPRC) five times larger than previous attempts and the median AUROC of assigned functions to genes is 0.82. We tested ISOGO predictions on some genes with isoform-specific functions (BRCA1, MADD,VAMP7 and ITSN1) and they were coherent with the literature. Besides, we examined whether the main isoform of each gene -as predicted by APPRIS- was the most likely to have the annotated gene functions and it occurs in 99.4% of the genes. We also evaluated the predictions for isoform-specific functions provided by the CAFA3 challenge and results were also convincing. To make these results available to the scientific community, we have deployed a web application to consult ISOGO predictions (https://biotecnun.unav.es/app/isogo). Initial data, website link, isoform-specific GO function predictions and R code is available at https://gitlab.com/icassol/isogo.


Subject(s)
Algorithms , Molecular Sequence Annotation/methods , Protein Isoforms/genetics , Alternative Splicing , Gene Ontology , Humans , Open Reading Frames
7.
PLoS One ; 15(1): e0220019, 2020.
Article in English | MEDLINE | ID: mdl-31945053

ABSTRACT

The migration of cancer cells is highly regulated by the biomechanical properties of their local microenvironment. Using 3D scaffolds of simple composition, several aspects of cancer cell mechanosensing (signal transduction, EMC remodeling, traction forces) have been separately analyzed in the context of cell migration. However, a combined study of these factors in 3D scaffolds that more closely resemble the complex microenvironment of the cancer ECM is still missing. Here, we present a comprehensive, quantitative analysis of the role of cell-ECM interactions in cancer cell migration within a highly physiological environment consisting of mixed Matrigel-collagen hydrogel scaffolds of increasing complexity that mimic the tumor microenvironment at the leading edge of cancer invasion. We quantitatively show that the presence of Matrigel increases hydrogel stiffness, which promotes ß1 integrin expression and metalloproteinase activity in H1299 lung cancer cells. Then, we show that ECM remodeling activity causes matrix alignment and compaction that favors higher tractions exerted by the cells. However, these traction forces do not linearly translate into increased motility due to a biphasic role of cell adhesions in cell migration: at low concentration Matrigel promotes migration-effective tractions exerted through a high number of small sized focal adhesions. However, at high Matrigel concentration, traction forces are exerted through fewer, but larger focal adhesions that favor attachment yielding lower cell motility.


Subject(s)
Collagen/pharmacology , Epithelial Cells/drug effects , Extracellular Matrix/drug effects , Focal Adhesions/drug effects , Laminin/pharmacology , Mechanotransduction, Cellular , Proteoglycans/pharmacology , Cell Adhesion/drug effects , Cell Line, Tumor , Cell Movement/drug effects , Collagen/chemistry , Drug Combinations , Epithelial Cells/metabolism , Epithelial Cells/pathology , Extracellular Matrix/chemistry , Extracellular Matrix/metabolism , Focal Adhesions/ultrastructure , Gene Expression , Humans , Integrin beta1/genetics , Integrin beta1/metabolism , Laminin/chemistry , Models, Biological , Proteoglycans/chemistry , Respiratory Mucosa/drug effects , Respiratory Mucosa/metabolism , Respiratory Mucosa/pathology , Surface Properties , Tumor Microenvironment/drug effects
8.
Nanomaterials (Basel) ; 9(6)2019 Jun 20.
Article in English | MEDLINE | ID: mdl-31226850

ABSTRACT

Copper ferrites containing Cu+ ions can be highly active heterogeneous Fenton catalysts due to synergic effects between Fe and Cu ions. Therefore, a method of copper ferrite nanosphere (CFNS) synthesis was selected that also permits the formation of cuprite, obtaining a CFNS composite that was subsequently calcined up to 400 °C. Composites were tested as Fenton catalysts in the mineralization of phenol (PHE), p-nitrophenol (PNP) and p-aminophenol (PAP). Catalysts were characterized by transmission electron microscopy (TEM), scanning electron microscopy (SEM), X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FTIR), X-ray photoelectron spectroscopy (XPS) and magnetic measurements. Degradation of all phenols was practically complete at 95% total organic carbon (TOC) removal. Catalytic activity increased in the order PHE < PNP < PAP and decreased when the calcination temperature was raised; this order depended on the electronic effects of the substituents of phenols. The as-prepared CFNS showed the highest catalytic activity due to the presence of cubic copper ferrite and cuprite. The Cu+ surface concentration decreased after calcination at 200 °C, diminishing the catalytic activity. Cuprite alone showed a lower activity than the CFNS composite and the homogeneous Fenton reaction had almost no influence on its overall activity. CFNS activity decreased with its reutilization due to the disappearance of the cuprite phase. Degradation pathways are proposed for the phenols.

9.
Sci Total Environ ; 669: 767-776, 2019 Jun 15.
Article in English | MEDLINE | ID: mdl-30897435

ABSTRACT

This study investigated the adsorption of two endocrine-disrupting chemicals, bisphenol A (BPA) and S (BPS), from water using activated carbon clothes (ACCs), as-received and oxidized, in the absence and presence of bacteria, analyzing both kinetic and equilibrium adsorption data. Kinetic study of the different systems showed that the adsorption rate was affected both by the oxidation of the adsorbent and by the presence of bacteria. Bisphenol adsorption kinetics followed a second-order kinetic model, with rate constants between 0.0228 and 0.0013 g min-1 mol-1. ACC was a much better adsorbent of E. coli compared to granular activated carbons, achieving 100% adsorption at 24 h. ACC oxidation reduced the adsorption capacity and the adsorbent-adsorbate relative affinity due to the decrease in carbon surface hydrophobicity. Conversely, the presence of bacteria in aqueous solution increased the ACC surface hydrophobicity and therefore enhanced the adsorption capacity of BPA and BPS on ACC, which was 33% and 24%, respectively. In all cases, more BPS than BPA was removed due to the greater dipolar moment of the former. Results found show that activated carbon clothes in the presence of bacteria can be an adequate process to remove bisphenol A and S from different aqueous systems.


Subject(s)
Benzhydryl Compounds/metabolism , Biodegradation, Environmental , Escherichia coli/metabolism , Phenols/metabolism , Water Pollutants, Chemical/metabolism , Adsorption , Bacteria , Charcoal/chemistry , Endocrine Disruptors/metabolism , Hydrogen-Ion Concentration , Hydrophobic and Hydrophilic Interactions , Kinetics , Waste Disposal, Fluid/methods
10.
IEEE Trans Med Imaging ; 38(3): 862-872, 2019 03.
Article in English | MEDLINE | ID: mdl-30296215

ABSTRACT

We present a 3D bioimage analysis workflow to quantitatively analyze single, actin-stained cells with filopodial protrusions of diverse structural and temporal attributes, such as number, length, thickness, level of branching, and lifetime, in time-lapse confocal microscopy image data. Our workflow makes use of convolutional neural networks trained using real as well as synthetic image data, to segment the cell volumes with highly heterogeneous fluorescence intensity levels and to detect individual filopodial protrusions, followed by a constrained nearest-neighbor tracking algorithm to obtain valuable information about the spatio-temporal evolution of individual filopodia. We validated the workflow using real and synthetic 3-D time-lapse sequences of lung adenocarcinoma cells of three morphologically distinct filopodial phenotypes and show that it achieves reliable segmentation and tracking performance, providing a robust, reproducible and less time-consuming alternative to manual analysis of the 3D+t image data.


Subject(s)
Imaging, Three-Dimensional/methods , Neural Networks, Computer , Pseudopodia/ultrastructure , Adenocarcinoma/diagnostic imaging , Adenocarcinoma/pathology , Algorithms , Cell Line , Humans , Image Processing, Computer-Assisted , Lung Neoplasms/diagnostic imaging , Lung Neoplasms/pathology , Neoplasms/diagnostic imaging , Pseudopodia/physiology , Spatio-Temporal Analysis
11.
J Colloid Interface Sci ; 511: 193-202, 2018 Feb 01.
Article in English | MEDLINE | ID: mdl-29024859

ABSTRACT

A copper ferrite synthesized by a sol-gel combustion method was calcined at different temperatures up to 800°C, determining changes in its structural characteristics and magnetic measurements and studying its catalytic performance in gallic acid removal by Fenton reaction. The main objective was to study the effect of the calcination temperature of copper ferrite on its crystalline phase formation and transformation, activity and metal ion leaching. The cubic-to-tetragonal transformation of the spinel occurred via its reaction with the CuO phase, displacing Fe3+ ions in B (octahedral) sites out of the spinel structure by the following reaction: 2Fe3+B+3CuO→Fe2O3+3Cu2+B. The catalysts showed superparamagnetic or substantial superparamagnetic behaviour. At higher calcination temperatures, catalyst activity was lower, and Cu ion leaching was markedly decreased. There was no Fe ion leaching with any catalyst. The as-prepared catalyst showed better catalytic performance than a commercial copper ferrite. Leached Cu ions acted as homogeneous catalysts, and their contribution to the overall removal mechanism was examined. Cu2O present in the as-prepared catalysts made only a small contribution to their activity. Finally, the reutilization of various catalysts was studied by performing different catalytic cycles.

12.
Materials (Basel) ; 10(7)2017 Jul 04.
Article in English | MEDLINE | ID: mdl-28773108

ABSTRACT

Waste biomass-derived activated carbons (ACs) are promising materials for supercapacitor electrodes due to their abundance and low cost. In this study, we investigated the potential use of Melia azedarach (MA) stones to prepare ACs for supercapacitors. The ash content was considerably lower in MA stones (0.7% ash) than that found in other lignocellulosic wastes. ACs were prepared by KOH activation of pristine, carbonized, and hydrothermally-treated MA stones. The morphology, composition, surface area, porosity, and surface chemistry of the ACs were determined. Electrochemical measurements were carried out in three- and two-electrode cells, 3EC and 2EC, respectively, using 1 M H2SO4 as the electrolyte. The highest capacitance from galvanostatic charge-discharge (GCD) in 2EC ranged between 232 and 240 F·g-1 at 1 A·g-1. The maximum energy density reached was 27.4 Wh·kg-1 at a power density of 110 W·kg-1. Electrochemical impedance spectroscopy (EIS) revealed an increase in equivalent series resistance (ESR) and charge transfer resistance (RCT) with greater ash content. Electrochemical performance of MA stone-derived ACs was compared with that of other ACs described in the recent literature that were prepared from different biomass wastes and results showed that they are among the best ACs for supercapacitor applications.

13.
PLoS One ; 12(2): e0171417, 2017.
Article in English | MEDLINE | ID: mdl-28166248

ABSTRACT

Microfluidic devices are becoming mainstream tools to recapitulate in vitro the behavior of cells and tissues. In this study, we use microfluidic devices filled with hydrogels of mixed collagen-Matrigel composition to study the migration of lung cancer cells under different cancer invasion microenvironments. We present the design of the microfluidic device, characterize the hydrogels morphologically and mechanically and use quantitative image analysis to measure the migration of H1299 lung adenocarcinoma cancer cells in different experimental conditions. Our results show the plasticity of lung cancer cell migration, which turns from mesenchymal in collagen only matrices, to lobopodial in collagen-Matrigel matrices that approximate the interface between a disrupted basement membrane and the underlying connective tissue. Our quantification of migration speed confirms a biphasic role of Matrigel. At low concentration, Matrigel facilitates migration, most probably by providing a supportive and growth factor retaining environment. At high concentration, Matrigel slows down migration, possibly due excessive attachment. Finally, we show that antibody-based integrin blockade promotes a change in migration phenotype from mesenchymal or lobopodial to amoeboid and analyze the effect of this change in migration dynamics, in regards to the structure of the matrix. In summary, we describe and characterize a robust microfluidic platform and a set of software tools that can be used to study lung cancer cell migration under different microenvironments and experimental conditions. This platform could be used in future studies, thus benefitting from the advantages introduced by microfluidic devices: precise control of the environment, excellent optical properties, parallelization for high throughput studies and efficient use of therapeutic drugs.


Subject(s)
Cell Movement , Collagen , Laminin , Microfluidics , Proteoglycans , Tissue Scaffolds , Cell Line, Tumor , Collagen/chemistry , Collagen/ultrastructure , Diffusion , Drug Combinations , Extracellular Matrix , Humans , Hydrogels , Laminin/chemistry , Laminin/ultrastructure , Mechanical Phenomena , Microfluidics/methods , Microscopy, Confocal , Neoplasm Metastasis , Phenotype , Proteoglycans/chemistry , Proteoglycans/ultrastructure , Spheroids, Cellular , Tissue Scaffolds/chemistry , Tumor Cells, Cultured , Tumor Microenvironment
14.
Adv Colloid Interface Sci ; 236: 113-41, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27530712

ABSTRACT

Carbon spheres (CSs) have recently attracted major interest due to their new applications, mainly in energy storage and conversion but also in hard-templating, sorption/catalysis processes, and drug delivery systems. This is attributable to their physico-chemical properties, including their tunable morphology (solid, hollow and core-shell), size, surface area/porosity, good electrical conductivity, low external surface-to-volume ratio, high packing density, enhanced mass transport, robust mechanical stability, low cytotoxicity, and excellent biocompatibility. They can be obtained from a wide variety of carbon precursors and methods. This review covers their production by carbonization of polymer spheres from low-temperature polymerization reactions, considered here as below 250°C. This is a very important method because it allows the synthesis of CSs with different morphologies and doped with other elements or chemical compounds. The preparation of polymer spheres by this technique is well documented in the literature, and the objective of this review is to summarize and give an overview of the most significant publications, proposing a novel classification based on the formation mechanism of the polymer spheres. This classification includes the following polymerization processes: emulsion polymerization and its derivatives, seeded emulsion and inverse emulsion polymerization; precipitation polymerization and its derivative, dispersion polymerization; hard-templating; spray-drying; and hydrothermal or solvothermal treatment of carbohydrates and biomass in general. This review also reports on the morphology and surface characteristics of the CSs obtained by different synthetic approaches. The final section of the review describes the current applications of these CSs, notably in energy storage (supercapacitors and rechargeable batteries) and energy conversion (fuel cells and dye-sensitized solar cells). Besides the numerous applications listed above, they are utilized as sacrificial hard templates to prepare single- and multi-shell hollow spheres of metal oxides and other inorganic compounds and filters, as well as in adsorption and catalysis processes, drug delivery systems, and other minority applications (e.g., lubricants, black pigment in e-papers, and microwave absorber).


Subject(s)
Carbon/chemistry , Drug Delivery Systems/methods , Microspheres , Polymerization , Adsorption , Catalysis , Cold Temperature , Emulsions , Particle Size , Porosity , Surface Properties
15.
Pap. psicol ; 36(3): 174-181, sept.-dic. 2015.
Article in Spanish | IBECS | ID: ibc-144815

ABSTRACT

El presente artículo es una invitación al debate sobre el fenómeno de medicalización en la infancia en salud mental, apelando a una toma de consciencia de los profesionales. Para ello analiza, en clave epistemológica, el ejemplo paradigmático del Trastorno de Déficit de Atención con o sin Hiperactividad (TDA-H). Aborda la construcción social del trastorno y el tratamiento, así como algunas falacias sobre las que se apoya: TDA-H es un déficit neurológico, es diagnosticado por profesionales especializados, los tratamientos son eficaces y se realizan en interés del menor


This article is an invitation to debate about the phenomenon of the medicalisation of children in mental healthcare, appealing for awareness among practitioners. For this purpose, we analyse, from the point of view of epistemology, the paradigmatic case of Attention Deficit Disorder, with or without Hyperactivity (ADD and ADHD). We deal with the social construction of the disorder and its treatment, as well as with some fallacies on which it is based: that AD(H)D is a neurological deficit, that it is diagnosed by specialised professionals, that the treatments are effective and that these treatments are carried out in the interest of the minor


Subject(s)
Child , Humans , Medicalization/statistics & numerical data , Attention Deficit Disorder with Hyperactivity/drug therapy , Mental Health/trends , Inappropriate Prescribing/statistics & numerical data , Social Perception , Concept Formation , Child Welfare/trends
16.
Water Sci Technol ; 71(5): 789-94, 2015.
Article in English | MEDLINE | ID: mdl-25768228

ABSTRACT

The objective of this study was to investigate the effect of the presence of an activated carbon cloth (ACC) during the degradation and removal of gallic acid (GA) and p-coumaric acid (pCA) by Fenton oxidation using H2O2 and FeSO4 as catalyst. Removal of GA or pCA by Fenton oxidation was much higher than that of total organic carbon (TOC), indicating that a large proportion of GA or pCA degradation products was not mineralized. The presence of ACC increased the concentration of hydroxyl radicals generated in the FeSO4 + H2O2 system. The presence of ACC during Fenton oxidation largely increased TOC and GA removal, attributable to the adsorption of GA and its degradation products and the increased generation of OH(•) radicals that mineralize them. In the Fenton oxidation of pCA, the presence of ACC produced the same effects as for GA, but now the increased removal of pCA was due to adsorption on the activated carbon and not to the increased generation of hydroxyl radicals, due to the greater affinity of pCA for the carbon surface and its more difficult mineralization in comparison to GA.


Subject(s)
Charcoal , Coumaric Acids/chemistry , Gallic Acid/chemistry , Adsorption , Carbon , Catalysis , Ferric Compounds/chemistry , Hydrogen Peroxide/chemistry , Hydroxyl Radical , Oxidation-Reduction , Propionates , Water
17.
Annu Int Conf IEEE Eng Med Biol Soc ; 2015: 8139-42, 2015 Aug.
Article in English | MEDLINE | ID: mdl-26738183

ABSTRACT

The geometry of 3D collagen networks is a key factor that influences the behavior of live cells within extra-cellular matrices. This paper presents a method for automatic quantification of the 3D collagen network geometry with fiber resolution in confocal reflection microscopy images. The proposed method is based on a smoothing filter and binarization of the collagen network followed by a fiber reconstruction algorithm. The method is validated on 3D collagen gels with various collagen and Matrigel concentrations. The results reveal that Matrigel affects the collagen network geometry by decreasing the network pore size while preserving the fiber length and fiber persistence length. The influence of network composition and geometry, especially pore size, is preliminarily analyzed by quantifying the migration patterns of lung cancer cells within microfluidic devices filled with three different hydrogel types. The experiments reveal that Matrigel, while decreasing pore size, stimulates cell migration. Further studies on this relationship could be instrumental for the study of cancer metastasis and other biological processes involving cell migration.


Subject(s)
Neoplasms , Cell Movement , Collagen , Extracellular Matrix , Humans , Microscopy, Confocal
18.
Langmuir ; 30(6): 1716-22, 2014 Feb 18.
Article in English | MEDLINE | ID: mdl-24460055

ABSTRACT

Two series of B-doped carbon gels were prepared by the polymerization of resorcinol and formaldehyde in water using either boric acid or phenyl boronic acid as dopants. Both organic hydrogels were dried by four methods: supercritical, freeze, microwave oven, and vacuum oven drying. The effects of the boron precursor and drying method on the surface characteristics were studied by N2 and CO2 adsorption at -196 and 0 °C, respectively, immersion calorimetry into benzene and water, temperature-programmed desorption coupled with mass spectrometry, X-ray photoelectron spectroscopy, and thermogravimetric analysis. Electrochemical characterization was carried out in a three-electrode cell, using Ag/AgCl as a reference electrode and a Pt wire as a counter electrode. The surface area obtained from immersion calorimetry into benzene was more realistic than that yielded by the Brunauer-Emmett-Teller (BET) equation. The hydrophobicity of the samples decreased linearly with a higher oxygen content. In addition, the oxygen content of the B-doped carbon gels increased linearly with a higher B content, and the interfacial or areal capacitance decreased linearly with a larger surface area. The capacitance was increased by B addition because of the pseudocapacitance effects of the higher oxygen content of the samples. The cryogel and vacuum-dried xerogel obtained from the boric acid series, Bc and Bv, respectively, showed the largest gravimetric and volumetric capacitances, around 140 F/g and 95 F/cm(3), respectively.

19.
Langmuir ; 29(20): 6166-73, 2013 May 21.
Article in English | MEDLINE | ID: mdl-23617279

ABSTRACT

Carbon xerogels in the form of microspheres and monoliths were obtained from the sol-gel polymerization of resorcinol and formaldehyde in the presence of potassium carbonate as catalyst, using water as solvent and two different molar dilution ratios. The objectives of this study were as follows: to investigate the effect of the dilution ratio, polymerization reaction time, and temperature on the rheological properties of the sols used to prepare the carbon xerogel microspheres and monoliths; and to determine the influence of their preparation methods and shapes on their surface characteristics and electrochemical double-layer (EDL) capacitance. An increase in the molar dilution ratio produced a decrease in the apparent activation energy of the sol-gel transition. Carbon xerogel microspheres were steam-activated at different burnoff percentages. The morphology, surface area, porosity, and surface chemistry of samples were determined. The main difference between the carbon xerogel microspheres and monoliths was that the latter are largely mesoporous. Better electrochemical behavior was shown by carbon xerogels in monolith than in microsphere form, but higher gravimetric and volumetric capacitances were found in activated carbon xerogel microspheres than in carbon xerogel monoliths.


Subject(s)
Carbon/chemistry , Formaldehyde/chemistry , Gels/chemistry , Resorcinols/chemistry , Electrochemical Techniques , Microspheres , Particle Size , Rheology , Surface Properties , Temperature , Time Factors
20.
J Mater Chem B ; 1(27): 3359-3368, 2013 Jul 21.
Article in English | MEDLINE | ID: mdl-32260926

ABSTRACT

We have investigated the capacity of activated carbon cloth to support the growth and differentiation of human mesenchymal umbilical-cord stromal stem cells. Our results demonstrate that this scaffold provides suitable conditions for the development of cell-derived matrix proteins and facilitates the growth of undifferentiated stem cells with the ability to induce osteogenic and chondrogenic differentiation. Immunoflourescence staining revealed extensive expression of collagen in all the samples, and collagen type II and osteopontin within the samples cultivated in specific differentiation-inducing media. Cell growth and the formation of natural collagen, calcium-magnesium carbonate and hydroxyapatite crystals, together with the self-assemblage of collagen to produce suprafibrillar arrangements of fibrils all occur simultaneously and can be studied together ex vivo under physiological conditions. Furthermore, the spontaneous differentiation of stem cells cultured on activated carbon cloth with no osteogenic supplements opens up new possibilities for bone-tumour engineering and treatment of traumatic and degenerative bone diseases.

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