Crossed molecular beam experiments and theoretical simulations on the multichannel reaction of toluene with atomic oxygen.

Despite extensive experimental and theoretical studies on the kinetics of the O(3P) + C7H8 (toluene) reaction and a pioneering crossed molecular beam (CMB) investigation, the branching fractions (BFs) of the CH3C6H4O(methylphenoxy) + H, C6H5O(phenoxy) + CH3, and spin-forbidden C5H5CH3 (methylcyclopentadiene) + CO product channels remain an open question, which has hampered the proper inclusion of this important reaction in the chemical modelling of various chemical environments. We report a CMB study with universal soft electron-ionization mass-spectrometric detection of the reactions O(3P,1D) + toluene at the collision energy of 34.7 kJ mol-1. From CMB data we have inferred the reaction dynamics and quantified the BFs of the primary products and the role of intersystem crossing (ISC). The CH3-elimination channel dominates (BF = 0.69 ± 0.22) in the O(3P) reaction, while the H-displacement and CO-formation channels are minor (BF = 0.22 ± 0.07 and 0.09 ± 0.05, respectively), with ISC accounting for more than 50% of the reactive flux. Synergistic transition-state theory (TST)-based master equation simulations including nonadiabatic TST on ab initio coupled triplet/singlet potential energy surfaces were employed to compute the product BFs and assist in the interpretation of the CMB results. In the light of the good agreement between the theoretical predictions for the O(3P) + toluene reaction and the CMB results as well as the absolute rate constant as a function of temperature (T) (from literature), the so-validated computational methodology was used to predict channel-specific rate constants as a function of T at 1 atm.

Toward an Accurate Black-Box Tool for the Kinetics of Gas-Phase Reactions Involving Barrier-less Elementary Steps.

An enhanced computational protocol has been devised for the accurate characterization of gas-phase barrier-less reactions in the framework of the reaction-path (RP) and variable reaction coordinate variational transition-state theory. In particular, the synergistic combination of density functional theory and Monte Carlo sampling to optimize reactive fluxes led to a reliable yet effective computational workflow. A black-box strategy has been developed for selecting the most suited density functional with reference to a high-level one-dimensional reference potential. At the same time, different descriptions of hindered rotations are automatically selected, depending on the corresponding harmonic frequencies along the RP. The performance of the new tool is investigated by means of two prototypical reactions involving different degrees of static and dynamic correlation, namely, H2S + Cl and CH3 + CH3. The remarkable agreement of the computed kinetic parameters with the available experimental data confirms the accuracy and robustness of the proposed approach. Together with their intrinsic interest, these results also pave the way toward systematic investigations of gas-phase reactions involving barrier-less elementary steps by a reliable, user-friendly tool, which can be confidently used also by nonspecialists.

Kinetics of CN (v = 1) reactions with butadiene isomers at low temperature by cw-cavity ring-down in a pulsed Laval flow with theoretical modelling of rates and entrance channel branching.

We present an experimental and theoretical investigation of the reaction of vibrationally excited CN (v = 1) with isomers of butadiene at low temperature. The experiments were conducted using the newly built apparatus, UF-CRDS, which couples near-infrared cw-cavity ring-down spectroscopy with a pulsed Laval flow. The well-matched hydrodynamic time and long ring-down time decays allow measurement of the kinetics of the reactions within a single trace of a ring-down decay, termed Simultaneous Kinetics and Ring-down (SKaR). The pulsed experiments were carried out using a Laval nozzle designed for the 70 K uniform flow with nitrogen as the carrier gas. The measured bimolecular rates for the reactions of CN (v = 1) with 1,3-butadiene and 1,2-butadiene are (3.96 ± 0.28) × 10-10 and (3.06 ± 0.35) × 10-10 cm3 per molecule per s, respectively. The reaction rate measured for CN (v = 1) with the 1,3-butadiene isomer is in good agreement with the rate previously reported for the reaction with ground state CN (v = 0) under similar conditions. We report the rate of the reaction of CN (v = 1) with the 1,2-butadiene isomer here for the first time. The experimental results were interpreted with the aid of variable reaction-coordinate transition-state theory calculations to determine rates and branching of the addition channels based on a high-level multireference treatment of the potential energy surface. H-abstraction reaction rates were also theoretically determined. For the 1,2-butadiene system, theoretical estimates are then combined with literature values for the energy-dependent product yields from the initial adducts to predict overall temperature-dependent product branching. H loss giving 2-cyano-1,3-butadiene + H is the main product channel, exclusive of abstraction, at all energies, but methyl loss forming 1-cyano-prop-3-yne is 15% at low temperature growing to 35% at 500 K. Abstraction forming HCN and various radicals is important at 500 K and above. The astrochemical implications of these results are discussed.

RETRACTION: Intrinsic innervation and dopaminergic markers after experimental denervation in rat thymus.

On behalf of the coauthors and with much regret, I must retract our publication entitled "Intrinsic innervation and dopaminergic markers after experimental denervation in rat thymus" published in European Journal of Histochemistry 2010;54(2):e17 for the following reason: Unfortunately, now, after thirteen years, we have realized that some microphotographs published in the paper have been processed to improve the presentation of the images. The three surviving authors of the paper agree that the processing of the presentation images is against the COPE Ethical Editorial Standard, although the presentation images do not alter the integrity of methodological procedures and the results of the research work, obtained from the direct analysis of slides under microscope and rigorous statistical analysis of data; therefore, we, the authors of the above indicated paper, request the retraction of the publication. We apologize for what happened.   Maurizio Sabbatini Dip. di Scienze e Innovazione Tecnologica (DISIT) Università del Piemonte Orientale Alessandria, Italy.

Investigation of Methylcyclopentadiene Reactivity: Abstraction Reactions and Methylcyclopentadienyl Radical Unimolecular Decomposition.

Understanding the reactivities of methylcyclopentadiene and the methylcyclopentadienyl radical is important in order to improve our comprehension of the chemical kinetics leading to the formation, decomposition, and growth of the first aromatic ring, as it has been shown that five-membered-ring species are important intermediates in the reaction kinetics of aromatic species. In this work, the rate constants of some key H-abstraction reactions from methylcyclopentadiene to produce the methylcyclopentadienyl radical and the formation of fulvene and benzene from the latter are theoretically determined. Rate constants are evaluated using the ab initio transition state theory-based master equation approach, determining structures and Hessians of all stationary points at the ωB97X-D/aug-cc-pVTZ level, energies at the CCSD(T) level extrapolated to the complete basis set limit, RRKM rate constants using conventional and variational transition state theory, and phenomenological rate constants through the solution of the one-dimensional master equation. Variational corrections are determined in both internal and Cartesian coordinates, and it is found that the choice of the coordinate system can impact the accuracy of the calculated rate constants by up to a factor of 4 for H-abstraction reactions and 2 for the unimolecular decomposition of the methylcyclopentadienyl radical. The calculated rate constants are in good agreement with the available literature data. Prompt dissociation of methylcyclopentadienyl radicals accessed following H-abstraction from methylcyclopentadiene was also investigated, and the corresponding rate constants were determined; the results show that prompt dissociation plays a key role under combustion conditions. Finally, lumping of theoretically derived rate constants to account for methylcyclopentadiene ⇄ methylcyclopentadienyl tautomerism allowed the derivation of a simplified set of rate constants suitable to be inserted into kinetic mechanisms.

Intersystem crossing in the entrance channel of the reaction of O(3P) with pyridine.

Two quantum effects can enable reactions to take place at energies below the barrier separating reactants from products: tunnelling and intersystem crossing between coupled potential energy surfaces. Here we show that intersystem crossing in the region between the pre-reactive complex and the reaction barrier can control the rate of bimolecular reactions for weakly coupled potential energy surfaces, even in the absence of heavy atoms. For O(3P) plus pyridine, a reaction relevant to combustion, astrochemistry and biochemistry, crossed-beam experiments indicate that the dominant products are pyrrole and CO, obtained through a spin-forbidden ring-contraction mechanism. The experimental findings are interpreted-by high-level quantum-chemical calculations and statistical non-adiabatic computations of branching fractions-in terms of an efficient intersystem crossing occurring before the high entrance barrier for O-atom addition to the N-atom lone pair. At low to moderate temperatures, the computed reaction rates prove to be dominated by intersystem crossing.

Crossed-Beam and Theoretical Studies of the O(3P, 1D) + Benzene Reactions: Primary Products, Branching Fractions, and Role of Intersystem Crossing.

Reliable modeling of hydrocarbon oxidation relies critically on knowledge of the branching fractions (BFs) as a function of temperature (T) and pressure (p) for the products of the reaction of the hydrocarbon with atomic oxygen in its ground state, O(3P). During the past decade, we have performed in-depth investigations of the reactions of O(3P) with a variety of small unsaturated hydrocarbons using the crossed molecular beam (CMB) technique with universal mass spectrometric (MS) detection and time-of-flight (TOF) analysis, combined with synergistic theoretical calculations of the relevant potential energy surfaces (PESs) and statistical computations of product BFs, including intersystem crossing (ISC). This has allowed us to determine the primary products, their BFs, and extent of ISC to ultimately provide theoretical channel-specific rate constants as a function of T and p. In this work, we have extended this approach to the oxidation of one of the most important species involved in the combustion of aromatics: the benzene (C6H6) molecule. Despite extensive experimental and theoretical studies on the kinetics and dynamics of the O(3P) + C6H6 reaction, the relative importance of the C6H5O (phenoxy) + H open-shell products and of the spin-forbidden C5H6 (cyclopentadiene) + CO and phenol adduct closed-shell products are still open issues, which have hampered the development of reliable benzene combustion models. With the CMB technique, we have investigated the reaction dynamics of O(3P) + benzene at a collision energy (Ec) of 8.2 kcal/mol, focusing on the occurrence of the phenoxy + H and spin-forbidden C5H6 + CO and phenol channels in order to shed further light on the dynamics of this complex and important reaction, including the role of ISC. Concurrently, we have also investigated the reaction dynamics of O(1D) + benzene at the same Ec. Synergistic high-level electronic structure calculations of the underlying triplet/singlet PESs, including nonadiabatic couplings, have been performed to complement and assist the interpretation of the experimental results. Statistical (RRKM)/master equation (ME) computations of the product distribution and BFs on these PESs, with inclusion of ISC, have been performed and compared to experiment. In light of the reasonable agreement between the CMB experiment, literature kinetic experimental results, and theoretical predictions for the O(3P) + benzene reaction, the so-validated computational methodology has been used to predict (i) the BF between the C6H5O + H and C5H6 + CO channels as a function of collision energy and temperature (at 0.1 and 1 bar), showing that their increase progressively favors radical (phenoxy + H)-forming over molecule (C5H6 + CO and phenol stabilization)-forming channels, and (ii) channel-specific rate constants as a function of T and p, which are expected to be useful for improved combustion models.

Theoretical Study of the Extent of Intersystem Crossing in the O(3P) + C6H6 Reaction with Experimental Validation.

The extent of intersystem crossing in the O(3P) + C6H6 reaction, a prototypical system for spin-forbidden reactions in oxygenated aromatic molecules, is theoretically evaluated for the first time. Calculations are performed using nonadiabatic transition-state theory coupled with stochastic master equation simulations and Landau-Zener theory. It is found that the dominant intersystem crossing pathways connect the T2 and S0 potential energy surfaces through at least two distinct minimum-energy crossing points. The calculated channel-specific rate constants and intersystem crossing branching fractions differ from previous literature estimates and provide valuable kinetic data for the investigation of benzene and polycyclic aromatic hydrocarbons oxidation in interstellar, atmospheric, and combustion conditions. The theoretical results are supported by crossed molecular beam experiments with electron ionization mass-spectrometric detection and time-of-flight analysis at 8.2 kcal/mol collision energy. This system is a suitable benchmark for theoretical and experimental studies of intersystem crossing in aromatic species.

Electronic structure-based rate rules for ipso addition-elimination reactions on mono-aromatic hydrocarbons with single and double OH/CH3/OCH3/CHO/C2H5 substituents: a systematic theoretical investigation.

The recent interest in bio-oils combustion and the key role of mono-aromatic hydrocarbons (MAHs) in existing kinetic frameworks, both in terms of poly-aromatic hydrocarbons growth and surrogate fuels formulation, motivates the current systematic theoretical investigation of one of the relevant reaction classes in MAHs pyrolysis and oxidation: ipso substitution by hydrogen. State-of-the-art theoretical methods and protocols implemented in automatized computational routines allowed to investigate 14 different potential energy surfaces involving MAHs with hydroxy and methyl single (phenol and toluene) and double (o-,m-,p-C6H4(OH)2, o-,m-,p-CH3C6H4OH, and o-,m-,p-C6H4(CH3)2) substituents, providing rate constants for direct implementation in existing kinetic models. The accuracy of the adopted theoretical method was validated by comparison of the computed rate constants with the available literature data. Systematic trends in energy barriers, pre-exponential factors, and temperature dependence of the Arrhenius parameters were found, encouraging the formulation of rate rules for ipso substitutions on MAHs. The rules here proposed allow to extrapolate from a reference system the necessary activation energy and pre-exponential factor corrections for a large number of reactions from a limited set of electronic structure calculations. We were able to estimate rate constants for other 63 ipso addition-elimination reactions on di-substituted MAHs, reporting in total 75 rate constants for ipso substitution reactions o-,m-,p-R'C6H4R + → C6H5R + ', with R,R' = OH/CH3/OCH3/CHO/C2H5, in the 300-2000 K range. Additional calculations performed for validation showed that the proposed rate rules are in excellent agreement with the rate constants calculated using the full computational protocol in the 500-2000 K range, generally with errors below 20%, increasing up to 40% in a few cases. The main results of this work are the successful application of automatized electronic structure calculations for the derivation of accurate rate constants for ipso substitution reactions on MAHs, and an efficient and innovative approach for rate rules formulation for this reaction class.

State-of-the-Art Quantum Chemistry Meets Variable Reaction Coordinate Transition State Theory to Solve the Puzzling Case of the H2S + Cl System.

The atmospheric reaction of H2S with Cl has been reinvestigated to check if, as previously suggested, only explicit dynamical computations can lead to an accurate evaluation of the reaction rate because of strong recrossing effects and the breakdown of the variational extension of transition state theory. For this reason, the corresponding potential energy surface has been thoroughly investigated, thus leading to an accurate characterization of all stationary points, whose energetics has been computed at the state of the art. To this end, coupled-cluster theory including up to quadruple excitations has been employed, together with the extrapolation to the complete basis set limit and also incorporating core-valence correlation, spin-orbit, and scalar relativistic effects as well as diagonal Born-Oppenheimer corrections. This highly accurate composite scheme has also been paralleled by less expensive yet promising computational approaches. Moving to kinetics, variational transition state theory and its variable reaction coordinate extension for barrierless steps have been exploited, thus obtaining a reaction rate constant (8.16 × 10-11 cm3 molecule-1 s-1 at 300 K and 1 atm) in remarkable agreement with the experimental counterpart. Therefore, contrary to previous claims, there is no need to invoke any failure of the transition state theory, provided that sufficiently accurate quantum-chemical computations are performed. The investigation of the puzzling case of the H2S + Cl system allowed us to present a robust approach for disclosing the thermochemistry and kinetics of reactions of atmospheric and astrophysical interest.

Combined Experimental and Theoretical Studies of the O(3P) + 1-Butene Reaction Dynamics: Primary Products, Branching Fractions, and Role of Intersystem Crossing.

Information on the detailed mechanism and dynamics (primary products, branching fractions (BFs), and channel specific rate constants as a function of temperature) for many important combustion reactions of O(3P) with unsaturated hydrocarbons is still lacking. We report synergistic experimental/theoretical studies on the mechanism and dynamics of the O(3P) + 1-C4H8 (1-butene) reaction by combining crossed molecular beam (CMB) experiments with soft electron ionization mass-spectrometric detection and time-of-flight analysis at 10.5 kcal/mol collision energy (Ec) to high-level ab initio electronic structure calculations of the underlying triplet and singlet potential energy surfaces (PESs) and statistical Rice-Ramsperger-Kassel-Marcus/Master Equation (RRKM/ME) computations of BFs including intersystem crossing (ISC). The reactive interaction of O(3P) with 1-butene is found to mainly break apart the 4-carbon atom chain, leading to the radical product channels ethyl + vinoxy (BF = 0.34 ± 0.11), methyl + C3H5O (BF = 0.28 ± 0.09), formyl + propyl (BF = 0.17 ± 0.05), ethyl + acetyl (BF = 0.014 ± 0.007), and butanal radical (ethylvinoxy) + H (BF = 0.013 ± 0.004), and molecular product channels formaldehyde + propenylidene/propene (BF = 0.15 ± 0.05) and butenone (ethyl ketene) + H2 (BF = 0.037 ± 0.015). As some of these products can only be formed via ISC from triplet to singlet PESs, from BFs an extent of ISC of 50% is inferred. This value is significantly larger than that recently observed for O(3P) + propene (22%) at similar Ec, underlying the question of how important it is to consider nonadiabatic effects for these and similar combustion reactions. Comparison of the derived BFs with those of statistical (RRKM/ME) simulations on the ab initio coupled triplet/singlet PESs shows good agreement, warranting the use of the RRKM/ME approach to provide information on the variation of BFs with temperature and to derive channel specific rate constants as a function of temperature (T) and pressure (p). Notably, ISC is predicted to decrease strongly with increasing temperature (from about 70% at 300 K to 46% at Ec = 10.5 kcal/mol, and about 1% at 2000 K). The present results lead to a detailed understanding of the complex reaction mechanism of O(3P) + 1-butene and, by providing channel specific rate constants as a function of T and p, should facilitate the improvement of current fossil-fuel (1-butene) as well as biofuel (1-butanol) combustion models.

Molecular insight into protein binding orientations and interaction modes on hydrophobic charge-induction resin.

Hydrophobic charge-induction chromatography (HCIC) with 4-mercaptoethyl-pyridine (MEP) as the functional ligand has been developed as a new technology for antibody purification. In the present work, molecular simulation methods were developed to investigate the interactions between the Fc fragment of IgG and a MEP ligand net. The MM/PBSA method was used to evaluate the binding energy for the MEP ligand net at different densities. It was found that ligand density had significant influence on the binding of Fc. Potential binding conformations were further analyzed by molecular dynamics simulation. It was found that the interaction between Fc and MEP ligand net is driven by self-adaptive conformation adjustment and multiple-site binding. Hydrophobic forces dominate the binding interaction, which appeared as the results of synergistic actions of binding sites located on CH2, CH3, and the consensus binding site (CBS) of the Fc fragment. At acidic pH, the electrostatic repulsion between the basic residues and the protonated pyridine ring group on MEP ligands is the main driving force for the detachment of the Fc fragment from the MEP net.

Laminin and Collagen IV: Two Polypeptides as Marker of Dystocic Labor.

Collagen IV and Laminin are localized in cells and tissue of numerous human organs including the uterus, where these polypeptides control either age changes, or uterus growth in pregnancy, or ripening and dilatation in labor. Authors examined the polypeptides distribution of collagen IV and Laminin in the human pregnant uterus, in normal and dystocic labor, to clarify their physiologic role, by distribution and/or their changes in prolonged dystocic labor. We collected lower uterine segment (LUS) fragments during cesarean section (CS); these biopsies were treated with basic morphological staining for the observation of microscopic- anatomic details. Other samples were processed with immunohistochemical staining for collagen IV and for membrane bound Laminin. All morphological and immunochemical results were analyzed with quantitative analysis of images and statistical analysis of data. Both Collagen IV and Laminin show changes in the pregnant uterus before 4 hours of full cervical dilatation in patients after 4 hours. All the three types of the human uterine cells, mucosal, submucosal and smooth muscular cells, are more reduced in LUS after 4 hours of cervical dilatation in dystocic labor. The connective tissues (including fibroblast) show the most evident changes in the dystocic LUS, collagen IV and laminin changes during cervical dilatation in prolonged dystocic labor, with a decreased elasticity with increased roughness and dryness. The LUS anatomical modifications during labor can be the cause of pathological changes in protracted dystocic labor. In the dystocic labor that lasts more than 4 hours from the complete cervical ripening and dilatation, the laminin and collagen IV concentration reduces in the LUS tissue. In dystocic labor, delivery should be completed before the 3 hours of full dilation, to avoid a reduction of laminin and collagen IV and a worsening of LUS healing for the next pregnancy.

Neurotransmitters and Neuropeptides Expression in the Uterine Scar After Cesarean Section.

Peptides and neuropeptides influence the uterine disorders of healing or cicatrization, chronic pelvic pain and disorder of pregnancy, labor and puerperium. They also promote changes in the lower uterine segment (LUS) during pregnancy, labor and delivery. We investigated the tissue quantity of neurotensin (NT), neuropeptide tyrosin (NPY) and Protein Gene Product 9.5 (PGP 9.5) in women submitted to elective cesarean section (CS) and urgent CS. During surgery, authors biopsied tissue samples of vesico-uterine space (VUS) to detect nerve fibers, and compared them. VUS samples from 106 patients have been evaluated with light microscopy, immunochemistry and Immunohistochemistry, and finally by Quantimet Leica analyzer software. Significantly higher amount of nerve fibers, containing NT, NPY and PGP 9.5 have been found in VUS tissue samples obtained during the first elective CS and during the first urgent CS were respectively 5±0.7, 7±0.6 and 5±0.9 CU and 2.5±0.5, 3.6±0.4 and 3.5±0.9 CU (p<0.05). This neurotransmitter reduction should indicate the inflammatory damage of cervical tissue for LUS over distension in dystocic-prolonged labor before CS. These results may be correlated with the decrease of NT, NPY and PGP 9.5, responsible for an optimal healing and LUS functions. In our opinion, the presence of neuropeptides reduction in uterine samples of women undergoing urgent CS may be due to a prolonged fetal head station in LUS, with a tissue denervation, in consequence of both overdistension and inflammatory process of the dystocic LUS.

Molecular Modeling of the Interaction of Protein L with Antibodies.

Protein L (PpL) is a bacterial protein which is used in the affinity chromatography stage of the production of monoclonal antibodies because of its ability to form high affinity complexes with the light chains of immunoglobulins. In the present work, the binding interfaces between one domain of PpL and antigen-binding fragments (Fab) have been investigated adopting molecular dynamics with the aim of determining the binding contribution of the residues located at the Fab-PpL interface. Because it is known that PpL binds antibodies through two distinct binding sites with different affinities, simulations were performed for both sites to determine interaction free energies to assess the relative binding contribution of the two sites. Mutational studies were then performed only on the dominant binding site. The binding free energy was evaluated with the molecular mechanics Poisson-Boltzmann surface area (MMPBSA) and umbrella sampling/weighted histogram analysis methods. Key residues for the formation of the dominant binding site complex were identified by means of alanine scanning performed both for the Fab and PpL domains. Residues of the light chain of the antibody that contribute most to binding were found to be located between SER7 and VAL13. Four residues from PpL are important for the stability of the complex: PHE839, LYS840, GLU849, and TYR853. Three residues of PpL that do not contribute to the interaction were mutated to histidine (HIS), which changes its protonation state as a function of pH, to find whether this could allow us to control the binding interaction energy. This can be useful in the elution stage of the affinity chromatography purification of antibodies if PpL is used as a ligand. These residues are GLN835, THR836, and ALA837. Molecular dynamics simulations with both protonated and unprotonated HIS were performed to mimic how changing pH may reflect on protein-ligand interaction energies. The MMPBSA approach was used to evaluate the variation of the affinity of the mutated systems with reference to the wild type. Our results show that these mutations could help in disrupting the complex under acidic conditions without impairing the affinity of PpL for the light chains at higher pHs.

A Qualitative and Quantitative Study of the Innervation of the Human Non Pregnant Uterus.

Human female reproductive system is closely dependent by hormonal stimulation. Anyway it is now commonly stated that autonomic innervation system regulates, along with hormonal stimulation, the uterine physiology. Cholinergic and adrenergic innervations have a critical role in mediating input to the uterus, but other neurotransmitters and neuropeptides exist that influence uterine physiology, as well. In the present investigation, we analyzed the uterine distribution of a large set of neurotransmitters, focusing on adrenergic, noradredenergic, acetylcholine (AChE) positive, dopaminergic, serotoninergic and peptidergic neurofibers; among these latter, we focused on those releasing prolattine, enkephalines (ENKs), Vasoactive Intestinal Polypeptide (VIP), substance P (SP) and oxytocine. Authors demonstrate the differential localization of these neurofibers in non pregnant uterine fundus, corpus and cervix, sampling myometrial assays of 31 patients submitted to hysterectomy. In fundus uteri, we observed a prevalence of prolactinergic (32.1 ± 1.4 Conventional Unit, C.U.) and adrenergic (36.4 ± 4.5 C.U.) neurofibers; in uterine body VIP positive neurofibers (32.6 ± 4.8 C.U.) and prolactinergic neurofibers (30.3 ± 1.2 C.U.) were the most represented. In uterine cervix, we detected the highest concentration of all the neurofibers analysed, with enkephalinergic neurofibers (94 ± 1.7 C.U.), oxitocinergic neurofibers (72.1 ± 5.1 C.U.), SP positive neurofibers (66.1 ± 4.4 C.U.), acetylcholine positive neurofibers (64.5± 3.6 C.U.), serotoninergic neurofibers (56.4 ± 3.9 C.U.) and VIP positive neurofibers (58.3 ± 5.2 C.U.) being the most expressed. This study demonstrates that uterine cervix harbors a higher concentration of almost all neurotransmitters, compared to the other two uterine anatomic sites. The uterine cervix is largely involved during pregnancy and labor, and the rich neurotransmitters density could contribute to confer to the cervix a proper potential plasticity, necessary for pregnancy and labour.

Exploring short intramolecular interactions in alkylaromatic substrates.

From proteins and peptides to semiconducting polymers, aliphatic chains on aromatic groups are recurring motifs in macromolecules from very diverse application fields. Fields in which molecular folding and packing determine the macroscopic physical properties that make such advanced materials appealing in the first place. Within each macromolecule, the intrinsic structure of each unit defines how it interacts with its neighbours, ultimately opening up or denying certain backbone conformations. This eventually also determines how macromolecules interact with each other. This account deals specifically with the conformational problem of many common alkylaromatic units, examining the features of an intramolecular interaction involving a side chain with as few as three methylene groups. A set of 23 model compounds featuring an intramolecular interaction between an aliphatic X-H (X = C, N, O, and S) bond and an aromatic ring was considered. Quantitative computational analysis was made possible, thanks to complete basis set extrapolated CCSD(T) calculations and NCI topological analysis, the latter of which revealed an elaborate network of dispersive and steric interactions leading to somewhat unintuitive and unexpected results, such as the higher energetic stability of certain twisted conformational isomers over those with extended side chains. Vicinal covalent effects from polarizing groups and various heteroatoms, along with the occurrence of non-dispersive phenomena, were also investigated. The conclusions drawn from the investigation include a comprehensive set of guidelines intended to aid in the prediction of the most stable conformation for this class of building blocks. Our findings affect a variety of different research fields, including the tailoring of functional materials for organic electronics and photovoltaics, with insights into a rational treatment of conformational disorder, and the study of protein- and peptide-folding preferences, putting an emphasis on peculiar interactions between the backbone and aromatic residues.

Reaction Dynamics of O((3)P) + Propyne: I. Primary Products, Branching Ratios, and Role of Intersystem Crossing from Crossed Molecular Beam Experiments.

We performed synergic experimental/theoretical studies on the mechanism of the O((3)P) + propyne reaction by combining crossed molecular beams experiments with mass-spectrometric detection and time-of-flight analysis at 9.2 kcal/mol collision energy (Ec) with ab initio electronic structure calculations at a high level of theory of the relevant triplet and singlet potential energy surfaces (PESs) and statistical calculations of branching ratios (BRs) taking into account intersystem crossing (ISC). In this paper (I) we report the results of the experimental investigation, while the accompanying paper (II) shows results of the theoretical investigation with comparison to experimental results. By exploiting soft electron ionization detection to suppress/mitigate the effects of the dissociative ionization of reactants, products, and background gases, product angular and velocity distributions at different charge-to-mass ratios were measured. From the laboratory data angular and translational energy distributions in the center-of-mass system were obtained for the five competing most important product channels, and product BRs were derived. The reactive interaction of O((3)P) with propyne under single collision conditions is mainly leading to the rupture of the three-carbon atom chain, with production of the radical products methylketenyl + atomic hydrogen (BR = 0.04), methyl + ketenyl (BR = 0.10), and vinyl + formyl (BR = 0.11) and the molecular products ethylidene/ethylene + carbon monoxide (BR = 0.74) and propandienal + molecular hydrogen (BR = 0.01). Because some of the products can only be formed via ISC from the entrance triplet to the low-lying singlet PES, we infer from their BRs an amount of ISC larger than 80%. This value is dramatically large when compared to the negligible ISC reported for the O((3)P) reaction with the simplest alkyne, acetylene. At the same time, it is much larger than that (∼20%) recently observed in the related reaction of the three-carbon atom alkene, O((3)P) + propene at a comparable Ec. This poses the question of how important it is to consider nonadiabatic effects and their dependence on molecular structure for this kind of combustion reactions. The prevalence of the CH3 over the H displacement channels is not explained by invoking a preference for the addition on the methyl-substituted acetylenic carbon atom, but rather it is believed to be due to the different tendencies of the two addition triplet intermediates CH3CCHO (preferentially leading to H elimination) and CH3COCH (preferentially leading to CH3 elimination) to undergo ISC to the underlying singlet PES. It is concluded that the main coproduct of the CO forming channel is singlet ethylidene ((1)CH3CH) rather than ground-state ethylene. By comparing the derived BRs with those very recently derived from kinetics studies at room temperature and 4 Torr we obtained information on how BRs vary with collision energy. The extent of ISC is estimated to remain essentially constant (∼85%) with increasing Ec from ∼1 to ∼10 kcal/mol. The present experimental results shed light on the mechanism of the title reaction at energies comparable to those involved in combustion and, when compared with the results from the statistical calculations on the ab initio coupled PESs (see accompanying paper II), lead to an in-depth understanding of the rather complex reaction mechanism of O + propyne. The overall results are expected to contribute to the development of more refined models of hydrocarbon combustion.