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1.
Sci Total Environ ; 827: 154256, 2022 Jun 25.
Article in English | MEDLINE | ID: mdl-35248626

ABSTRACT

Production advantages, environmental benefits and increasing parasite resistance are changing the composition of New Zealand pastures. Traditional ryegrass/clover pasture mixes are being replaced by forage herb crops such as lucerne, chicory and plantain that accumulate a higher concentration of contaminants such as cadmium (Cd). To explore the relationship between Cd in forage crops and the Cd concentration accumulated by animals, four-month-old lambs at four farms across the central North Island of New Zealand were grazed on different forage crops (ryegrass, chicory, lucerne and plantain) between weaning and slaughter. Soil and pasture samples, and sequential liver biopsies, were collected and analysed for total Cd. There were significant differences in Cd concentration between the forage crops (chicory > plantain > lucerne > ryegrass) and this ordering was repeated for Cd in liver. There was no exceedance of maximum limits (ML) for Cd in offal set by the EU and NZ/Australia food safety standards authorities for animals of this study, although the highest concentration of Cd in chicory (0.85 mg/kg DW) was considerably lower than has been recorded elsewhere in New Zealand (4.5 mg/kg DW). Provisional Soil Management Values (SMVs) were developed to explore compliance of liver with EU food standards as a function of grazing chicory. For a soil pH of 5, exceedance might occur at a soil cadmium concentration of 0.34 mg/kg. This concentration falls within Tier 0 of the New Zealand Tiered Fertiliser Management System which seeks to ensure soil Cd remains within acceptable limits over the next 100 years and beyond. Increased Cd uptake by fodder crops and its management in these Tier 0 pastoral soils is therefore an emerging issue for pastoral agriculture. The risk of ML exceedance for animals grazing forage crops such as chicory on low Cd soils should be further considered to ensure uninterrupted access to export markets.


Subject(s)
Cichorium intybus , Lolium , Plantago , Agriculture , Animals , Cadmium/analysis , Farms , Sheep , Sheep, Domestic , Soil
2.
J Environ Qual ; 50(6): 1464-1475, 2021 Nov.
Article in English | MEDLINE | ID: mdl-34625958

ABSTRACT

Cadmium (Cd) leaching is often estimated in Cd balance models using the product of drainage water (precipitation excess) and soil solution Cd concentration. However, Cd concentrations are seldom available but rather predicted using empirical models. Despite the availability of empirical models that estimate soil solution Cd concentrations, they have limitations for use in New Zealand where total Cd in agricultural soils is low and organic matter (OM) high. This study derived a Freundlich-type model from desorption data and a soil-liquid partitioning coefficient (KD ) model based on sorption data to predict soil solution Cd concentrations from commonly measured soil parameters that could be used to calculate Cd leaching fluxes. Independent soil solution Cd concentrations and Cd fluxes measured in drainage water from field trials were used to validate the predictive capacity of the models. It was found that soil pH and OM content were the most important factors controlling soil solution Cd, along with total Cd. Both models explained 83% of the variation in measured soil solution Cd concentrations in an independent dataset. Comparisons between Cd fluxes predicted using the Freundlich-type model and measured fluxes were within 25% of each other at 6 of 19 field sites studied. However, physical and chemical nonequilibrium conditions in soils and uncertainty in measured values likely contributed to differences between predicted and measured Cd fluxes at other sites. To unravel the impact of nonequilibrium and soil physical conditions on Cd concentrations in drainage water, more data are required on Cd concentrations collected under field conditions. This will allow better validation of the approach used in Cd balance models to calculate Cd leaching from soils.


Subject(s)
Soil Pollutants , Soil , Agriculture , Cadmium/analysis , New Zealand , Soil Pollutants/analysis
4.
Philos Trans R Soc Lond B Biol Sci ; 376(1834): 20200172, 2021 09 27.
Article in English | MEDLINE | ID: mdl-34365824

ABSTRACT

Soils play a key role in meeting the UN Sustainable Development Goals (SDGs). In this study, we review the contribution of soils to the regulation of air quality, which is one of 'Nature's Contributions to People' identified by the Intergovernmental-Policy Platform on Biodiversity and Ecosystem Services (IPBES). This is particularly relevant for SDG3 (health and well-being) and 11 (sustainable cities and well-being) but also impacts other SDGs. Soils can act as both a source and a sink of air pollutants (and their precursors). In addition, soils support plant growth which plays a major role in regulating air quality. The scale of the soil impacts on air quality range from global (e.g. greenhouse gas fluxes, stratospheric ozone depletion) to local (e.g. odours, particulates, pathogen transport). Harmful emissions from soil can be increased or decreased by anthropogenic activity, while climate change is likely to modify future emissions patterns, both directly and in response to human mitigation and adaption actions. Although soils are not the only source of these pollutants, it is worthwhile managing them to reduce erosion and nutrient losses to maintain soil health so we may continue to benefit from the contributions to good quality of life they provide. This article is part of the theme issue 'The role of soils in delivering Nature's Contributions to People'.


Subject(s)
Air Pollutants/analysis , Air Pollution/analysis , Ecosystem , Soil/chemistry , Climate Change , Greenhouse Gases/analysis
5.
Environ Sci Pollut Res Int ; 28(36): 50919-50929, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34374009

ABSTRACT

The application of amendments such as farm dairy effluent (FDE) to soils which contain dissolved organic carbon (DOC) has the potential to increase cadmium (Cd) leaching through the formation of soluble organo-Cd complexes. However, the extent of Cd leaching loss is currently unknown. A lysimeter study measured Cd leaching from coarse and fine-textured Pumice soils amended with either FDE or single superphosphate (SSP) fertilizer. Results showed that despite FDE having a DOC concentration of 3000 mg L-1, concentrations in drainage were low (7.2 to 14.6 mg DOC L-1), probably reduced by microbes and/or sorption onto iron and aluminium oxides in the soil. As a result, there was no significant difference in the amount of Cd lost from the soil amended with FDE (0.79 g ha-1) or SSP (0.70 g ha-1). In comparison, greater amounts of Cd were lost from the fine-textured (0.92 g ha-1) than from the coarse-textured soil (0.57 g ha-1), primarily due to significantly higher Cd concentrations in drainage. The study indicates that a one-off application of FDE at the maximum rate allowed by regulators is unlikely to affect Cd leaching losses, although this still should be confirmed for other soil types that receive FDE.


Subject(s)
Soil Pollutants , Soil , Cadmium/analysis , Farms , Fertilizers/analysis , Soil Pollutants/analysis
6.
Sci Total Environ ; 800: 149479, 2021 Dec 15.
Article in English | MEDLINE | ID: mdl-34399332

ABSTRACT

Arsenate (As-V) is a ubiquitous contaminant in soil as a result of excessive use of veterinary drugs and pesticides, causing enormous environmental risks. Multiple biomarkers have been used to assess the ecotoxicity of arsenic, however, the mechanisms of toxicity remain unclear. This paper describes the exposure of the earthworm (Eisenia fetida) to natural soil with different As-V concentrations for 28 days, then biomarkers from oxidative stress and burrowing behavior were quantified to evaluate As-V stress. Dynamic changes in reactive oxygen species (ROS), lipid peroxidation (MDA), adenosine triphosphate (ATP) content and antioxidant enzymes activity (Gpx, SOD, CAT) implied two stages of intensified stress responses and physiological adaptability. The transcriptional expression and regulation of antioxidant enzymes showed different responses. The mRNA expression of sod1 was up-regulated, while that of cat showed no significant change. The related regulators, nuclear factor erythroid 2-related factor 2 (Nrf2) and heme oxygenase-1 (HO-1), showed dose-dependent activation, suggesting antioxidant defense induced by Nrf2 signaling. The burrowing behavior after 14-day exposure indicated that As-V inhibited burrowing activity, especially the burrow length and maximum burrow depth. These multiple biomarkers were integrated using a biomarker response index (BRI) model, which showed significant dose-effect relationship especially on day 28, and suggested that ATP was a sensitive and representative biomarker. This study provided evidence that burrowing activity, Nrf2 and HO-1 were useful biomarkers warranting inclusion into the BRI model. Arsenic toxicity was comprehensively understood through redox homeostasis regulation, biochemical and behavioral changes, and these results suggested new strategies for soil pollutants diagnosis.


Subject(s)
Oligochaeta , Soil Pollutants , Animals , Arsenates/toxicity , Biomarkers/metabolism , Catalase/metabolism , Oligochaeta/metabolism , Oxidative Stress , Soil Pollutants/toxicity , Superoxide Dismutase/metabolism
7.
Environ Toxicol Chem ; 39(6): 1257-1266, 2020 05.
Article in English | MEDLINE | ID: mdl-32187710

ABSTRACT

Silver nanoparticles (AgNPs) from industrial use, discharged via the land application of sewage sludge, are interacting with soil biota, including earthworms. In affected organisms, excessive production of reactive oxygen species can result in lipid peroxidation, shifting the balance between oxidants and antioxidants to cause oxidative stress. We determined selected lower-tier biomarkers such as antioxidant responses and lipid peroxidation in Aporrectodea caliginosa earthworms exposed to soils spiked with AgNPs or silver nitrate (AgNO3 ). Aporrectodea caliginosa were exposed to AgNPs at 0 (control), 0.3, 3, 30, and 300 mg/kg or Ag+ (as AgNO3 ) at 0, 0.03, 0.3, 3, and 10 mg/kg in soil for 4 wk. At 1, 2, 3, and 4 wk, the activity of the antioxidant enzymes superoxide dismutase, catalase, glutathione peroxidase, glutathione S-transferase, as well as lipid peroxidation (malondialdehyde content), increased as a function of concentration, with a much larger response for Ag+ than AgNPs. Given the likelihood of ever-increasing AgNP concentrations in soil, where AgNPs can transform to ionic Ag (Ag+ ), our findings of antioxidant response to oxidative stress in a common indicator organism even at an environmentally realistic exposure concentration of 0.03 mg/kg demonstrate that AgNPs may affect soil fertility and, thus, agricultural production. Evaluating selected lower-tier biomarkers offers a meaningful assessment of AgNPs and Ag+ effects on terrestrial earthworms. Environ Toxicol Chem 2020;39:1257-1266. © 2020 SETAC.


Subject(s)
Antioxidants/metabolism , Lipid Peroxidation/drug effects , Metal Nanoparticles/toxicity , Oligochaeta/drug effects , Silver Nitrate/toxicity , Silver/toxicity , Soil Pollutants/toxicity , Animals , Bioaccumulation , Catalase/metabolism , Glutathione Peroxidase/metabolism , Malondialdehyde/metabolism , Models, Theoretical , Oligochaeta/enzymology , Oligochaeta/metabolism , Oxidative Stress/drug effects , Silver/metabolism , Silver Nitrate/metabolism , Soil/chemistry , Soil Pollutants/metabolism , Superoxide Dismutase/metabolism
8.
Sci Total Environ ; 713: 136694, 2020 Apr 15.
Article in English | MEDLINE | ID: mdl-32019035

ABSTRACT

The relative ease with which cadmium (Cd) in agricultural soils can transfer to crop plants can pose a potential health risk to consumers. However, efforts to predict and mitigate these risks are often confounded by the various factors that influence metal accumulation in the edible plant parts. The aim of this work was to identify key drivers that determine Cd concentrations in spinach leaves, potato tubers, onion bulbs and wheat grain grown in commercial horticultural operations across New Zealand (NZ). Paired soil and plant samples (n = 147) were collected from farms across different NZ growing regions. Cadmium concentrations in the edible parts were measured and four different tests were used to examine the potential bioavailability of soil Cd: pseudo-total and porewater concentrations, 0.05 M Ca(NO3)2-extraction and diffusive gradients in thin-films (DGT). Information on a range of soil and climatic variables was also collected. The methods' ability to represent Cd concentrations in the plant parts was assessed through single and multiple regression analysis that considered the different variables and the farm locations. Soil Cd concentrations determined by the different tests were positively related to plant concentrations and there were clear regional differences between these relationships. The Ca(NO3)2 extraction predicted over 76% of the variability in Cd concentrations in onion bulbs and spinach leaves, while DGT and porewater Cd provided the best estimates for potato tubers and wheat grains, respectively, once regional differences were considered, along with certain environmental and soil variables. The results show that certain soil and environmental factors can be a key influence for determining Cd accumulation in the edible parts of some plants and that regional differences are important for modulating the extent to which this occurs. These effects should be considered when trying to mitigate the potential risks arising from Cd in agricultural soils.


Subject(s)
Soil , Cadmium , New Zealand , Onions , Soil Pollutants , Solanum tuberosum , Spinacia oleracea , Triticum
9.
J Environ Qual ; 48(3): 701-708, 2019 May.
Article in English | MEDLINE | ID: mdl-31180444

ABSTRACT

Wheat ( L.) grain is a contributing source of dietary Cd in New Zealand, but despite this, there is a dearth of information on Cd concentrations in wheat and the factors that affect uptake. We measured Cd concentrations in 12 wheat cultivars grown in field sites across New Zealand and also assessed the soil, plant, and crop factors that have been reported to affect Cd uptake. We found there was a wide range in grain Cd concentrations (0.004 to 0.205 mg kg fresh weight [FW]). The overall mean concentration (0.066 mg kg FW) was below the maximum limit (ML) of 0.1 mg kg FW. Only 7% of grain samples across seven sites exceeded the ML. There were significant ( < 0.05) differences (2.5-fold) in Cd concentrations in wheat grain between cultivars. No strong significant relationships were found between soil properties and Cd concentrations in grain. Further, management factors affecting grain Cd concentrations were inconsistent. Given the lack of relationships between soils and management practices, the most effective way of limiting Cd uptake in wheat grain at sites where Cd exceeds MLs may be the use of low-Cd-accumulating cultivars. Further studies are required to explore specifically the influence of irrigation and effects of type and rate of fertilizer on Cd uptake in wheat, as well as to better understand the mechanisms of Cd uptake in wheat.


Subject(s)
Cadmium , Soil Pollutants , New Zealand , Soil , Triticum
10.
Sci Total Environ ; 668: 780-789, 2019 Jun 10.
Article in English | MEDLINE | ID: mdl-30865908

ABSTRACT

Paired soil and plant samples collected from the main commercial growing areas for onions (Allium cepa), lettuce (Lactuca sativa) and spinach (Spinacia olearacea) in New Zealand were used to assess the influence of plant and soil factors on cadmium (Cd) uptake in these crops. Differences in Cd concentration between eight lettuce sub-types were not consistent across sites, nor were differences in Cd concentrations in three crisphead cultivars assessed at two sites. Similarly, differences in Cd concentrations between four onion cultivars were inconsistent across sites. Mean lettuce Cd concentrations in eight lettuce varieties (range 0.005-0.034 mg∙kg-1 (fresh weight, FW) were markedly lower than those in baby leaf and bunching spinach, (range 0.005-0.19 mg∙kg-1 FW). Significant regional variation was observed in Cd concentrations in one onion cultivar (mean range 0.007-0.05 mg∙kg-1 FW). Soil Cd concentration, pH and region were statistically significant predictors of onion Cd concentration, explaining low (38% for soil Cd and pH) to moderate (50% for all three parameters) percentage of the variation. Soil Cd concentration and exchangeable magnesium or total carbon were statistically significant predictors of Cd concentration in baby leaf and bunching spinach, respectively, explaining a moderate percentage (49% and 42%) of the variation in Cd concentration. Increasing pH and soil carbon may assist in minimising Cd uptake in onion and bunching spinach, respectively. The low to moderate proportion of explained variation is partly attributable to the narrow range in some measured soil properties and indicates factors other than those assessed are influencing plant uptake. This highlights a challenge in using these relationships to develop risk-based soil guideline values to support compliance with food standards. Similarly, the inconsistency in Cd concentrations in different cultivars across sites highlights the need for multi-site assessments to confirm the low Cd accumulation status of different cultivars.


Subject(s)
Cadmium/metabolism , Environmental Pollution/legislation & jurisprudence , Soil Pollutants/metabolism , Cadmium/standards , Environmental Policy , Environmental Pollution/statistics & numerical data , Lactuca/metabolism , New Zealand , Onions/metabolism , Soil Pollutants/standards , Spinacia oleracea/metabolism
11.
Toxicol In Vitro ; 48: 342-349, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29427707

ABSTRACT

The use of biosolids as a soil conditioner and fertiliser is hindered by the limited knowledge on the risks of micro-contaminants they contain. This study investigated the binding of six organic contaminants commonly found in biosolids, to the estrogen (ER), androgen (AR), aryl hydrocarbon (AhR), and transthyretin (TTR) receptors and their redox activity. Triclosan (TCS), bisphenol-A (BPA), and technical nonylphenol (TNP) had affinity for the TTR with relative potencies of 0.3, 0.03, and 0.076 respectively. Further, binding to TTR was the only toxicological response observed for carbamazepine, which induced sub-maximal response and relative potency of 0.0017. Estrogenic activity was induced by BPA, galaxolide (HHCB), diethylhexyl phthalate (DEHP) and TNP with BPA having the strongest potency of 5.1 × 10-6 relative to estradiol. Only BPA showed androgenic activity but it was not quantifiable. BPA also showed anti-androgenic activity along with TCS, HHCB, and TNP in the order of TNP > HHCB > TCS ~ BPA (relative potencies 0.126, 0.042, 0.032, 0.03). No compounds exhibited anti-estrogenic or AhR activity, or were redox-active in the dithiothreitol assay. The results highlight the multiple modes of action through which these compounds may impact exposed organisms, and the concentrations at which effects may occur. This allows assessment of the likelihood of effects being observed at environmental concentrations, and the potential contribution of these compounds.


Subject(s)
Endocrine Disruptors/toxicity , Environmental Pollutants/toxicity , Oxidative Stress/drug effects , Refuse Disposal , Animals , Cell Line , Drug Residues/toxicity , Humans , Pesticide Residues/toxicity , Rats , Receptors, Androgen/drug effects , Receptors, Aryl Hydrocarbon/drug effects , Receptors, Estrogen/drug effects , Receptors, Thyroid Hormone/drug effects
12.
Chemosphere ; 191: 868-875, 2018 Jan.
Article in English | MEDLINE | ID: mdl-29107228

ABSTRACT

Environmental chemicals can induce thyroid disruption through a number of mechanisms including altered thyroid hormone biosynthesis and transport, as well as activation and inhibition of the thyroid receptor. In the current study six in vitro bioassays indicative of different mechanisms of thyroid disruption and one whole animal in vivo assay were applied to 9 model compounds and 4 different water samples (treated wastewater, surface water, drinking water and ultra-pure lab water; both unspiked and spiked with model compounds) to determine their ability to detect thyroid active compounds. Most assays correctly identified and quantified the model compounds as agonists or antagonists, with the reporter gene assays being the most sensitive. However, the reporter gene assays did not detect significant thyroid activity in any of the water samples, suggesting that activation or inhibition of the thyroid hormone receptor is not a relevant mode of action for thyroid endocrine disruptors in water. The thyroperoxidase (TPO) inhibition assay and transthyretin (TTR) displacement assay (FITC) detected activity in the surface water and treated wastewater samples, but more work is required to assess if this activity is a true measure of thyroid activity or matrix interference. The whole animal Xenopus Embryonic Thyroid Assay (XETA) detected some activity in the unspiked surface water and treated wastewater extracts, but not in unspiked drinking water, and appears to be a suitable assay to detect thyroid activity in environmental waters.


Subject(s)
Biological Assay/standards , Endocrine Disruptors/analysis , Thyroid Hormones/metabolism , Water Pollutants, Chemical/analysis , Animals , Autoantigens , Genes, Reporter , Iodide Peroxidase , Iron-Binding Proteins , Thyroid Gland/drug effects , Xenopus laevis
13.
Environ Sci Pollut Res Int ; 24(30): 24046-24053, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28918458

ABSTRACT

Cadmium (Cd) transport in overland flow from agricultural soils is potentially important when trying to predict future soil Cd concentrations, but at present there is little information on the magnitude of loss from this pathway. This study measured Cd concentrations and fluxes in overland flow from a catchment where cattle winter-grazed a forage crop (kale) (Brassica oleracea) in year one and measurements continued in year two when the catchment was returned to pasture and grazed by sheep. Flow-weighted mean concentrations (FWMC) of total, particulate and dissolved Cd in overland flow events from the forage crop were 0.49, 0.41 and 0.08 µg L-1, respectively. In contrast, no dissolved Cd was detected in overland flow from pasture, with a FWMC of total Cd of 0.09 µg L-1. In line with the Cd concentrations, total Cd fluxes were greater from the forage crop (0.06 g Cd ha-1 year-1) than from pasture (0.04 g Cd ha-1 year-1). Cadmium losses in overland flow were relatively minor compared with those reported for other pathways such as plant uptake or subsurface flow. Further, compared to the amount of Cd that is currently added to soil in a maintenance application of phosphate fertiliser (30 kg P ha-1 year-1) which is on average 5.5 g Cd ha-1, Cd losses in overland flow represented < 1% of inputs. Measurement of Cd losses in overland flow should be undertaken at other sites to confirm the low Cd losses found in this study, along with the distribution between dissolved and particulate fractions.


Subject(s)
Cadmium/analysis , Fertilizers/analysis , Soil Pollutants/analysis , Agriculture , Animals , Brassica , Cattle , Seasons , Sheep , Soil , Soil Pollutants/chemistry
14.
J Environ Qual ; 46(4): 836-844, 2017 Jul.
Article in English | MEDLINE | ID: mdl-28783779

ABSTRACT

Repeated applications of Cd-rich phosphate fertilizers have resulted in elevated concentrations of this toxic element in some New Zealand soils. Exceedance of the food safety standard for Cd (0.1 mg kg fresh weight) has been reported for potato ( L.). Composts may efficiently sorb Cd in soil and therefore reduce its phytoavailability, leading to reduced uptake by plants. We aimed to determine the potential of various composts, shredded corn stover, and lime at two different rates to reduce the transfer of Cd from a soil (containing 1.45 mg kg Cd) to potato (var. 'Nadine'). In the control, the peeled tubers, skins, leaves, and stems had Cd concentrations of 0.04, 0.09, 0.26, and 0.53 mg kg dry weight, respectively. There was a 71% reduction in tuber Cd concentrations in potatoes grown in soil amended with 5% (w/w) shredded corn stover, although it significantly decreased potato biomass. Potatoes grown in soil amended with pig manure compost, mushroom compost, sawdust-animal waste compost, and municipal compost at rates of either 2.5 or 5% (w/w) reduced tuber Cd concentrations by 58 to 66%, 46 to 63%, 52 to 53%, and 29 to 49%, respectively. Lime (1.3%) application in soil reduced tuber Cd concentrations by 50%. Composts significantly increased tuber biomass. Further work is warranted to identify the key components of composts that result in reduced Cd uptake by plants.


Subject(s)
Cadmium/pharmacokinetics , Soil Pollutants/pharmacokinetics , Solanum tuberosum , Animals , Calcium Compounds , Oxides , Soil
15.
Environ Sci Pollut Res Int ; 24(13): 12494-12500, 2017 May.
Article in English | MEDLINE | ID: mdl-28364203

ABSTRACT

Cadmium (Cd) losses in subsurface flow from stony soils that have received cow urine are potentially important, but poorly understood. This study investigated Cd loss from a soil under a winter dairy-grazed forage crop that was grazed either conventionally (24 h) or with restricted grazing (6 h). This provided an opportunity to test the hypothesis that urine inputs could increase Cd concentrations in drainage. It was thought this would be a result of cow urine either (i) enhancing dissolved organic carbon (DOC) concentrations via an increase in soil pH, resulting in the formation of soluble Cd-organic carbon complexes and, or (ii) greater inputs of chloride (Cl) via cow urine, promoting the formation of soluble Cd-Cl complexes. Cadmium concentrations in subsurface flow were generally low, with a spike above the water quality guidelines for a month after the 24-h grazing. Cadmium fluxes were on average 0.30 g Cd ha-1 year-1 (0.27-0.32 g Cd ha-1 year-1), in line with previous estimates for agricultural soils. The mean Cd concentration in drainage from the 24-h grazed plots was significantly higher (P < 0.05) than 6-h plots. No increase in DOC concentrations between the treatments was found. However, Cl concentrations in drainage were significantly higher (P < 0.001) from the 24-h than the 6-h grazed treatment plots, and positively correlated with Cd concentrations, and therefore, a possible mechanism increasing Cd mobility in soil. Further study is warranted to confirm the mechanisms involved and quantities of Cd lost from other systems.


Subject(s)
Cadmium , Soil/chemistry , Agriculture , Animals , Cattle , Female , Soil Pollutants , Urine
16.
Biol Res ; 50(1): 7, 2017 Feb 27.
Article in English | MEDLINE | ID: mdl-28241869

ABSTRACT

BACKGROUND: Earthworms are sensitive to toxic chemicals present in the soil and so are useful indicator organisms for soil health. Eisenia fetida are commonly used in ecotoxicological studies; therefore the assembly of a baseline transcriptome is important for subsequent analyses exploring the impact of toxin exposure on genome wide gene expression. RESULTS: This paper reports on the de novo transcriptome assembly of E. fetida using Trinity, a freely available software tool. Trinotate was used to carry out functional annotation of the Trinity generated transcriptome file and the transdecoder generated peptide sequence file along with BLASTX, BLASTP and HMMER searches and were loaded into a Sqlite3 database. To identify differentially expressed transcripts; each of the original sequence files were aligned to the de novo assembled transcriptome using Bowtie and then RSEM was used to estimate expression values based on the alignment. EdgeR was used to calculate differential expression between the two conditions, with an FDR corrected P value cut off of 0.001, this returned six significantly differentially expressed genes. Initial BLASTX hits of these putative genes included hits with annelid ferritin and lysozyme proteins, as well as fungal NADH cytochrome b5 reductase and senescence associated proteins. At a cut off of P = 0.01 there were a further 26 differentially expressed genes. CONCLUSION: These data have been made publicly available, and to our knowledge represent the most comprehensive available transcriptome for E. fetida assembled from RNA sequencing data. This provides important groundwork for subsequent ecotoxicogenomic studies exploring the impact of the environment on global gene expression in E. fetida and other earthworm species.


Subject(s)
Ecotoxicology , Gene Expression Profiling/methods , Oligochaeta/genetics , Transcriptome , Animals , Environmental Exposure , Gene Ontology , Oligochaeta/drug effects , Sequence Analysis, RNA/methods , Software , Soil Pollutants/toxicity , Toxicogenetics/methods
17.
Chemosphere ; 171: 485-490, 2017 Mar.
Article in English | MEDLINE | ID: mdl-28038420

ABSTRACT

Cytochrome P450 (CYP450) is a hemoprotein superfamily, among which CYP1, CYP2 and CYP3 play a major role in the metabolism of vast array of xenobiotics and endobiotics. This paper reports on three CYP enzyme variants (CYP1A2, CYP2E1 and CYP3A4) in three species of earthworm (Eisenia fetida, Metaphire guillelmi and Amynthas carnosus). The relative expression levels and localization of the three associated proteins were investigated at three life-cycle points (juvenile, sub-adult and adult), through comparison of anterior and posterior body tissue and between specific organs (body wall, intestine and reproductive tissues) using western blot analysis. This study confirmed the presence of CYP3A4, CYP1A2 and CYP2E1 in all three species of earthworm tested. The levels of expression varied with earthworm species, age, and body location. These differences in occurrence of the three CYP enzymes appeared to reflect the ecological niche (the spatial and temporal location and functional relationship of each individual or population in populations or communities), and the likelihood of contact with soil contaminants of the respective species. These results may help to explain why earthworms are capable of adapting to very different and extensively polluted soil environments and provide important data for subsequent ecotoxicology and ecological adaptability studies.


Subject(s)
Cytochrome P-450 CYP1A2/metabolism , Cytochrome P-450 CYP2E1/metabolism , Cytochrome P-450 CYP3A/metabolism , Oligochaeta/enzymology , Adaptation, Psychological , Animals , Intestinal Mucosa/metabolism
18.
Biol. Res ; 50: 7, 2017. tab, graf
Article in English | LILACS | ID: biblio-838971

ABSTRACT

BACKGROUND: Earthworms are sensitive to toxic chemicals present in the soil and so are useful indicator organisms for soil health. Eisenia fetida are commonly used in ecotoxicological studies; therefore the assembly of a baseline transcriptome is important for subsequent analyses exploring the impact of toxin exposure on genome wide gene expression. RESULTS: This paper reports on the de novo transcriptome assembly of E. fetida using Trinity, a freely available software tool. Trinotate was used to carry out functional annotation of the Trinity generated transcriptome file and the transdecoder generated peptide sequence file along with BLASTX, BLASTP and HMMER searches and were loaded into a Sqlite3 database. To identify differentially expressed transcripts; each of the original sequence files were aligned to the de novo assembled transcriptome using Bowtie and then RSEM was used to estimate expression values based on the alignment. EdgeR was used to calculate differential expression between the two conditions, with an FDR corrected P value cut off of 0.001, this returned six significantly differentially expressed genes. Initial BLASTX hits of these putative genes included hits with annelid ferritin and lysozyme proteins, as well as fungal NADH cytochrome b5 reductase and senescence associated proteins. At a cut off of P = 0.01 there were a further 26 differentially expressed genes. CONCLUSION: These data have been made publicly available, and to our knowledge represent the most comprehensive available transcriptome for E. fetida assembled from RNA sequencing data. This provides important groundwork for subsequent ecotoxicogenomic studies exploring the impact of the environment on global gene expression in E. fetida and other earthworm species.


Subject(s)
Animals , Oligochaeta/genetics , Gene Expression Profiling/methods , Ecotoxicology , Transcriptome , Oligochaeta/drug effects , Soil Pollutants/toxicity , Software , Sequence Analysis, RNA/methods , Toxicogenetics/methods , Environmental Exposure , Gene Ontology
19.
Environ Pollut ; 213: 8-15, 2016 Jun.
Article in English | MEDLINE | ID: mdl-26874314

ABSTRACT

Cadmium (Cd) is a non-essential trace element that accumulates in agricultural soils through the application of Cd-rich phosphate fertiliser. Vegetables can accumulate Cd to concentrations that sometimes exceed food safety standards. We investigated the potential of low-cost soil amendments to reduce Cd uptake by spinach (Spinacia oleracea L.), lettuce (Lactuca sativa L.) and onion (Allium cepa L.). Batch sorption experiments revealed the relative sorption of Cd by biosolids, charcoal, lignite, sawdust, two types of compost, bentonite and zeolite. Lignite and compost had the greatest ability to sorb Cd and were subsequently selected for pot trials, which elucidated their effect on Cd uptake by onions, spinach and lettuce in two market garden soils with native Cd concentrations of 1.45 mg/kg and 0.47 mg/kg. The addition of 2.5% (dry w/w) municipal compost reduced the Cd concentration in onions, spinach and lettuce by up to 60% in both soils. The addition of lignite gave variable results, which depended on the soil type and rate of addition. This Cd immobilisation was offset by soil acidification caused by the lignite. The results indicate that municipal compost is a low-cost soil conditioner that is effective in reducing plant Cd uptake.


Subject(s)
Cadmium/chemistry , Coal , Lactuca/chemistry , Onions/chemistry , Soil Pollutants/chemistry , Soil/chemistry , Spinacia oleracea/chemistry , Vegetables/chemistry , Adsorption/physiology , Agriculture/methods , Cadmium/analysis , Fertilizers/analysis , Phosphates , Soil Pollutants/analysis , Wood/chemistry
20.
J Hazard Mater ; 308: 312-20, 2016 May 05.
Article in English | MEDLINE | ID: mdl-26852206

ABSTRACT

Individual and combined effects of enrofloxacin (EF) and cadmium (Cd) on the earthworm Eisenia fetida at environmentally relevant concentrations were investigated. EF is a veterinary antibiotic; Cd is an impurity in phosphatic fertiliser. For both, residues may accumulate in farm soils. In laboratory tests, over 98% of spiked EF was adsorbed by farm soils, with a half-life >8 weeks. However, earthworms absorbed less than 20% of spiked EF. Earthworms in soil with EF concentration 10 mg kg(-1) soil experienced transient oxidative stress and exhibited reduced burrowing activity and respiration after an 8-week exposure; EF at 0.1 and 1.0 mg kg(-1) soil did not elicit toxicity symptoms. When both were added, Cd did not affect EF uptake, but each increment of spiked EF increased Cd bioaccumulation and associated oxidative stress of earthworms, and also caused decreased burrow length and CO2 production. However, metallothionein induction was not affected. The enhanced toxicity of Cd to earthworms in the presence of EF at low environmental concentrations may have implications for the health and reproductive success of earthworm populations and highlights the importance of understanding effects of antibiotic contamination of farm soils, and of awareness of environmental effects from interaction between multiple contaminants.


Subject(s)
Anti-Bacterial Agents/toxicity , Cadmium/toxicity , Fluoroquinolones/toxicity , Oligochaeta/drug effects , Soil Pollutants/toxicity , Adsorption , Agriculture , Animals , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacokinetics , Cadmium/chemistry , Cadmium/pharmacokinetics , Enrofloxacin , Fluoroquinolones/chemistry , Fluoroquinolones/pharmacokinetics , Oligochaeta/metabolism , Oxidative Stress/drug effects , Soil/chemistry , Soil Pollutants/chemistry , Soil Pollutants/pharmacokinetics
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