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1.
Methods Mol Biol ; 2760: 319-344, 2024.
Article in English | MEDLINE | ID: mdl-38468097

ABSTRACT

We briefly present machine learning approaches for designing better biological experiments. These approaches build on machine learning predictors and provide additional tools to guide scientific discovery. There are two different kinds of objectives when designing better experiments: to improve the predictive model or to improve the experimental outcome. We survey five different approaches for adaptive experimental design that iteratively search the space of possible experiments while adapting to measured data. The approaches are Bayesian optimization, bandits, reinforcement learning, optimal experimental design, and active learning. These machine learning approaches have shown promise in various areas of biology, and we provide broad guidelines to the practitioner and links to further resources.


Subject(s)
Machine Learning , Research Design , Bayes Theorem
2.
Healthcare (Basel) ; 11(13)2023 Jun 30.
Article in English | MEDLINE | ID: mdl-37444730

ABSTRACT

Disease surveillance is used to monitor ongoing control activities, detect early outbreaks, and inform intervention priorities and policies. However, data from disease surveillance that could be used to support real-time decisionmaking remain largely underutilised. Using the Brazilian Amazon malaria surveillance dataset as a case study, in this paper we explore the potential for unsupervised anomaly detection machine learning techniques to discover signals of epidemiological interest. We found that our models were able to provide an early indication of outbreak onset, outbreak peaks, and change points in the proportion of positive malaria cases. Specifically, the sustained rise in malaria in the Brazilian Amazon in 2016 was flagged by several models. We found that no single model detected all anomalies across all health regions. Because of this, we provide the minimum number of machine learning models top-k models) to maximise the number of anomalies detected across different health regions. We discovered that the top three models that maximise the coverage of the number and types of anomalies detected across the thirteen health regions are principal component analysis, stochastic outlier selection, and the minimum covariance determinant. Anomaly detection is a potentially valuable approach to discovering patterns of epidemiological importance when confronted with a large volume of data across space and time. Our exploratory approach can be replicated for other diseases and locations to inform monitoring, timely interventions, and actions towards the goal of controlling endemic disease.

3.
BMC Health Serv Res ; 23(1): 485, 2023 May 13.
Article in English | MEDLINE | ID: mdl-37179300

ABSTRACT

BACKGROUND: During the early stages of the COVID-19 pandemic, there was considerable uncertainty surrounding epidemiological and clinical aspects of SARS-CoV-2. Governments around the world, starting from varying levels of pandemic preparedness, needed to make decisions about how to respond to SARS-CoV-2 with only limited information about transmission rates, disease severity and the likely effectiveness of public health interventions. In the face of such uncertainties, formal approaches to quantifying the value of information can help decision makers to prioritise research efforts. METHODS: In this study we use Value of Information (VoI) analysis to quantify the likely benefit associated with reducing three key uncertainties present in the early stages of the COVID-19 pandemic: the basic reproduction number ([Formula: see text]), case severity (CS), and the relative infectiousness of children compared to adults (CI). The specific decision problem we consider is the optimal level of investment in intensive care unit (ICU) beds. Our analysis incorporates mathematical models of disease transmission and clinical pathways in order to estimate ICU demand and disease outcomes across a range of scenarios. RESULTS: We found that VoI analysis enabled us to estimate the relative benefit of resolving different uncertainties about epidemiological and clinical aspects of SARS-CoV-2. Given the initial beliefs of an expert, obtaining more information about case severity had the highest parameter value of information, followed by the basic reproduction number [Formula: see text]. Resolving uncertainty about the relative infectiousness of children did not affect the decision about the number of ICU beds to be purchased for any COVID-19 outbreak scenarios defined by these three parameters. CONCLUSION: For the scenarios where the value of information was high enough to justify monitoring, if CS and [Formula: see text] are known, management actions will not change when we learn about child infectiousness. VoI is an important tool for understanding the importance of each disease factor during outbreak preparedness and can help to prioritise the allocation of resources for relevant information.


Subject(s)
COVID-19 , Adult , Child , Humans , COVID-19/epidemiology , SARS-CoV-2 , Pandemics/prevention & control , Intensive Care Units , Models, Theoretical
4.
PLoS Biol ; 20(12): e3001921, 2022 12.
Article in English | MEDLINE | ID: mdl-36548240

ABSTRACT

Antarctic terrestrial biodiversity faces multiple threats, from invasive species to climate change. Yet no large-scale assessments of threat management strategies exist. Applying a structured participatory approach, we demonstrate that existing conservation efforts are insufficient in a changing world, estimating that 65% (at best 37%, at worst 97%) of native terrestrial taxa and land-associated seabirds are likely to decline by 2100 under current trajectories. Emperor penguins are identified as the most vulnerable taxon, followed by other seabirds and dry soil nematodes. We find that implementing 10 key threat management strategies in parallel, at an estimated present-day equivalent annual cost of US$23 million, could benefit up to 84% of Antarctic taxa. Climate change is identified as the most pervasive threat to Antarctic biodiversity and influencing global policy to effectively limit climate change is the most beneficial conservation strategy. However, minimising impacts of human activities and improved planning and management of new infrastructure projects are cost-effective and will help to minimise regional threats. Simultaneous global and regional efforts are critical to secure Antarctic biodiversity for future generations.


Subject(s)
Conservation of Natural Resources , Spheniscidae , Animals , Humans , Antarctic Regions , Biodiversity , Introduced Species , Climate Change , Ecosystem
5.
Conserv Biol ; 36(1): e13868, 2022 02.
Article in English | MEDLINE | ID: mdl-34856010

ABSTRACT

Biodiversity conservation decisions are difficult, especially when they involve differing values, complex multidimensional objectives, scarce resources, urgency, and considerable uncertainty. Decision science embodies a theory about how to make difficult decisions and an extensive array of frameworks and tools that make that theory practical. We sought to improve conceptual clarity and practical application of decision science to help decision makers apply decision science to conservation problems. We addressed barriers to the uptake of decision science, including a lack of training and awareness of decision science; confusion over common terminology and which tools and frameworks to apply; and the mistaken impression that applying decision science must be time consuming, expensive, and complex. To aid in navigating the extensive and disparate decision science literature, we clarify meaning of common terms: decision science, decision theory, decision analysis, structured decision-making, and decision-support tools. Applying decision science does not have to be complex or time consuming; rather, it begins with knowing how to think through the components of a decision utilizing decision analysis (i.e., define the problem, elicit objectives, develop alternatives, estimate consequences, and perform trade-offs). This is best achieved by applying a rapid-prototyping approach. At each step, decision-support tools can provide additional insight and clarity, whereas decision-support frameworks (e.g., priority threat management and systematic conservation planning) can aid navigation of multiple steps of a decision analysis for particular contexts. We summarize key decision-support frameworks and tools and describe to which step of a decision analysis, and to which contexts, each is most useful to apply. Our introduction to decision science will aid in contextualizing current approaches and new developments, and help decision makers begin to apply decision science to conservation problems.


Las decisiones sobre la conservación de la biodiversidad son difíciles de tomar, especialmente cuando involucran diferentes valores, objetivos multidimensionales complejos, recursos limitados, urgencia y una incertidumbre considerable. Las ciencias de la decisión incorporan una teoría sobre cómo tomar decisiones difíciles y una variedad extensa de marcos de trabajo y herramientas que transforman esa teoría en práctica. Buscamos mejorar la claridad conceptual y la aplicación práctica de las ciencias de la decisión para ayudar al órgano decisorio a aplicar estas ciencias a los problemas de conservación. Nos enfocamos en las barreras para la aceptación de las ciencias de la decisión, incluyendo la falta de capacitación y de conciencia por estas ciencias; la confusión por la terminología común y cuáles herramientas y marcos de trabajo aplicar; y la impresión errónea de que la aplicación de estas ciencias consume tiempo y debe ser costosa y compleja. Para asistir en la navegación de la literatura extensa y dispar de las ciencias de la decisión, aclaramos el significado de varios términos comunes: ciencias de la decisión, teoría de la decisión, análisis de decisiones, toma estructurada de decisiones y herramientas de apoyo para las decisiones. La aplicación de las ciencias de la decisión no tiene que ser compleja ni debe llevar mucho tiempo; de hecho, todo comienza con saber cómo pensar detenidamente en los componentes de una decisión mediante el análisis de decisiones (es decir, definir el problema, producir objetivos, desarrollar alternativas, estimar consecuencias y realizar compensaciones). Lo anterior se logra de mejor manera mediante la aplicación de una estrategia prototipos rápidos. En cada paso, las herramientas de apoyo para las decisiones pueden proporcionar visión y claridad adicionales, mientras que los marcos de apoyo para las decisiones (p.ej.: gestión de amenazas prioritarias y planeación sistemática de la conservación) pueden asistir en la navegación de los diferentes pasos de un análisis de decisiones para contextos particulares. Resumimos los marcos de trabajo y las herramientas más importantes de apoyo para las decisiones y describimos el paso, y el contexto, del análisis de decisiones para el que es más útil aplicarlos. Nuestra introducción a las ciencias de la decisión apoyará en la contextualización de las estrategias actuales y los nuevos desarrollos, y ayudarán al órgano decisorio a comenzar a aplicar estas ciencias en los problemas de conservación.


Subject(s)
Biodiversity , Conservation of Natural Resources , Conservation of Natural Resources/methods , Decision Making , Uncertainty
6.
Epidemics ; 37: 100503, 2021 12.
Article in English | MEDLINE | ID: mdl-34610549

ABSTRACT

PCR testing is a crucial capability for managing disease outbreaks, but it is also a limited resource and must be used carefully to ensure the information gain from testing is valuable. Testing has two broad uses for informing public health policy, namely to track epidemic dynamics and to reduce transmission by identifying and managing cases. In this work we develop a modelling framework to examine the effects of test allocation in an epidemic, with a focus on using testing to minimise transmission. Using the COVID-19 pandemic as an example, we examine how the number of tests conducted per day relates to reduction in disease transmission, in the context of logistical constraints on the testing system. We show that if daily testing is above the routine capacity of a testing system, which can cause delays, then those delays can undermine efforts to reduce transmission through contact tracing and quarantine. This work highlights that the two goals of aiming to reduce transmission and aiming to identify all cases are different, and it is possible that focusing on one may undermine achieving the other. To develop an effective strategy, the goals must be clear and performance metrics must match the goals of the testing strategy. If metrics do not match the objectives of the strategy, then those metrics may incentivise actions that undermine achieving the objectives.


Subject(s)
COVID-19 , Contact Tracing , Humans , Pandemics , Polymerase Chain Reaction , Quarantine , SARS-CoV-2
7.
Conserv Biol ; 34(6): 1463-1472, 2020 12.
Article in English | MEDLINE | ID: mdl-32691916

ABSTRACT

As declines in biodiversity accelerate, there is an urgent imperative to ensure that every dollar spent on conservation counts toward species protection. Systematic conservation planning is a widely used approach to achieve this, but there is growing concern that it must better integrate the human social dimensions of conservation to be effective. Yet, fundamental insights about when social data are most critical to inform conservation planning decisions are lacking. To address this problem, we derived novel principles to guide strategic investment in social network information for systematic conservation planning. We considered the common conservation problem of identifying which social actors, in a social network, to engage with to incentivize conservation behavior that maximizes the number of species protected. We used simulations of social networks and species distributed across network nodes to identify the optimal state-dependent strategies and the value of social network information. We did this for a range of motif network structures and species distributions and applied the approach to a small-scale fishery in Kenya. The value of social network information depended strongly on both the distribution of species and social network structure. When species distributions were highly nested (i.e., when species-poor sites are subsets of species-rich sites), the value of social network information was almost always low. This suggests that information on how species are distributed across a network is critical for determining whether to invest in collecting social network data. In contrast, the value of social network information was greatest when social networks were highly centralized. Results for the small-scale fishery were consistent with the simulations. Our results suggest that strategic collection of social network data should be prioritized when species distributions are un-nested and when social networks are likely to be centralized.


Ideas Fundamentales sobre Cuándo Son Más Importantes los Datos de las Redes Sociales para la Planeación de la Conservación Resumen Conforme se aceleran las declinaciones de la biodiversidad, existe una exigencia urgente para asegurar que cada dólar que se gasta en conservación contribuya a la protección de las especies. La planeación sistemática de la conservación es una estrategia usada extensivamente para lograr esto, aunque cada vez existe una mayor preocupación por que integre las dimensiones sociales humanas de la conservación para que sea una estrategia efectiva. Aun así, es insuficiente el conocimiento fundamental sobre cuándo son más importantes los datos sociales para orientar a las decisiones de planeación de la conservación. Para tratar con este problema identificamos los principios novedosos que sirven como guía para la inversión estratégica en la información de las redes sociales para la planeación sistemática de la conservación. Consideramos un problema común para la conservación; identificar con cuáles actores sociales, dentro de una red social, interactuar para incentivar el comportamiento de conservación que maximice el número de especies protegidas. Usamos simuladores de redes sociales y de especies distribuidas a lo largo de nodos de redes para identificar las estrategias dependientes del estado más convenientes y el valor de la información provenientes de las redes sociales. Hicimos lo anterior para una gama de estructuras de redes de motivos y distribución de especies y aplicamos la estrategia a una pesquería a pequeña escala en Kenia. El valor de la información proveniente de las redes sociales depende firmemente tanto de la distribución de las especies como de la estructura de la red social. Cuando las distribuciones de las especies se encontraban extremadamente anidadas (es decir, cuando los sitios pobres en cuanto a cantidad de especies son subconjuntos de sitios ricos en cantidad de especies), el valor de la información proveniente de las redes sociales casi siempre fue bajo. Esto sugiere que la información sobre cómo se distribuyen las especies en una comunidad es crítica para determinar si invertir o no en la recolección de datos provenientes de las redes sociales. Como contraste, el valor de este tipo de información fue mucho mayor cuando las redes sociales estaban sumamente centralizadas. Los resultados de la pesquería a pequeña escala fueron compatibles con las simulaciones. Nuestros resultados sugieren que la recolección estratégica de datos a partir de las redes sociales debería ser prioridad cuando las distribuciones de las especies no se encuentran anidadas y cuando sea probable que las redes sociales estén centralizadas.


Subject(s)
Biodiversity , Conservation of Natural Resources , Humans , Investments , Kenya , Social Networking
8.
Nat Commun ; 10(1): 3901, 2019 08 29.
Article in English | MEDLINE | ID: mdl-31467273

ABSTRACT

Ecological systems are made up of complex and often unknown interactions and feedbacks. Uncovering these interactions and feedbacks among species, ecosystem functions, and ecosystem services is challenging, costly, and time-consuming. Here, we ask: for which ecosystem features does resolving the uncertainty about the feedbacks from ecosystem function to species improve management outcomes? We develop a dynamic value of information analysis for risk-neutral and risk-prone managers on motif ecosystems and explore the influence of five ecological features. We find that learning the feedbacks from ecosystem function to species does not improve management outcomes for maximising biodiversity, yet learning which species benefit from an ecosystem function improves management outcomes for ecosystem services by up to 25% for risk-neutral managers and 231% for risk-prone managers. Our general approach provides useful guidance for managers and researchers on when learning feedbacks from ecosystem function to species can improve management outcomes for multiple conservation objectives.


Subject(s)
Ecology , Ecosystem , Feedback , Models, Theoretical , Biodiversity , Conservation of Natural Resources , Environment , Uncertainty
9.
Nat Commun ; 10(1): 3570, 2019 08 08.
Article in English | MEDLINE | ID: mdl-31395891

ABSTRACT

With inadequate resources to manage the threats facing biodiversity worldwide, achieving projected management outcomes is critical for efficient resource allocation and species recovery. Despite this, conservation plans to mitigate threats rarely articulate the likelihood of management success. Here we develop a general value of information approach to quantify the impact of uncertainty on 20 threatening processes affecting 976 listed species and communities. To our knowledge, this is the most comprehensive quantification of the impacts of uncertainty on threat management. We discover that, on average, removing uncertainty about management effectiveness could triple the gain in persistence achieved by managing under current uncertainty. Management of fire, invasive animals and a plant pathogen are most impeded by uncertainty; management of invasive plants is least impacted. Our results emphasise the tremendous importance of reducing uncertainty about species responses to management, and show that failure to consider management effectiveness wastes resources and impedes species recovery.


Subject(s)
Biodiversity , Conservation of Natural Resources/methods , Ecology/methods , Uncertainty , Animals , Conservation of Natural Resources/economics , Ecology/economics , Fires , Models, Theoretical , Plants , Resource Allocation
10.
PLoS One ; 14(6): e0218093, 2019.
Article in English | MEDLINE | ID: mdl-31194779

ABSTRACT

Uniting diverse stakeholders through communication, education or building a collaborative 'common vision' for biodiversity management is a recommended approach for enabling effective conservation in regions with multiple uses. However, socially focused strategies such as building a collaborative vision can require sharing scarce resources (time and financial resources) with the on-ground management actions needed to achieve conservation outcomes. Here we adapt current prioritisation tools to predict the likely return on the financial investment of building a stakeholder-led vision along with a portfolio of on-ground management strategies. Our approach brings together and analyses expert knowledge to estimate the cost-effectiveness of a common vision strategy and on-ground management strategies, before any investments in these strategies are made. We test our approach in an intensively-used Australian biodiversity hotspot with 179 threatened or at-risk species. Experts predicted that an effective stakeholder vision for the region would have a relatively low cost and would significantly increase the feasibility of on-ground management strategies. As a result, our analysis indicates that a common vision is likely to be a cost-effective investment, increasing the expected persistence of threatened species in the region by 9 to 52%, depending upon the strategies implemented. Our approach can provide the maximum budget that is worth investing in building a common vision or another socially focused strategy for building support for on-ground conservation actions. The approach can assist with decisions about whether and how to allocate scarce resources amongst social and ecological actions for biodiversity conservation in other regions worldwide.


Subject(s)
Conservation of Natural Resources/economics , Cost-Benefit Analysis/economics , Animals , Australia , Biodiversity , Budgets/methods , Decision Making , Ecology/economics , Endangered Species/economics , Investments/economics , Knowledge
11.
J Environ Manage ; 215: 294-304, 2018 Jun 01.
Article in English | MEDLINE | ID: mdl-29574207

ABSTRACT

Under limited time and resources, ecological managers are under increasing pressure to demonstrate tangible impact of monitoring activities. Value of Information (VOI) has been advocated as an ideal tool to evaluate whether more data is required to improve expected management outcomes. Yet, despite several recent works explaining its value, VOI remains seldom used in practice. Here we provide an example of a successful ecological application of VOI. We apply VOI to a novel multi-objective freshwater management problem and show how to make the best use of expert data through a robust sensitivity analysis. Unlike previous VOI approaches, our analysis provides statistical confidence to our recommendations. We apply our approach to the recovery of Moira grass (Pseudoraphis spinescens) plains, a threatened vegetation community at the Ramsar-listed Barmah Forest on the Murray River, Australia. Working closely with managers, we discovered that although many threats may impede Moira grass recovery, reducing grazing pressure and applying ideal depth and duration of flooding were most likely to lead to recovery. We found that learning from monitoring can significantly increase the existing extent of Moira grass, although these gains are modest compared to immediate management action. Our study shows how VOI can be used to demonstrate efficient use of limited environmental water to maximise ecological impact and increase transparency when making monitoring or management decisions. More broadly, the study methods will be of interest to any environmental manager who needs to prioritise monitoring and evaluation activities subject to a limited research budget. At a time where researchers and managers are asked to be more accountable for their decision-making, VOI provides a very accessible tool that can speed up the decision of whether to wait and collect more data or act immediately despite uncertainty.


Subject(s)
Conservation of Natural Resources , Decision Making , Fresh Water , Australia , Environment , Uncertainty
12.
Nat Ecol Evol ; 2(3): 465-474, 2018 03.
Article in English | MEDLINE | ID: mdl-29403077

ABSTRACT

Mitigating the impacts of global anthropogenic change on species is conservation's greatest challenge. Forecasting the effects of actions to mitigate threats is hampered by incomplete information on species' responses. We develop an approach to predict community restructuring under threat management, which combines models of responses to threats with network analyses of species co-occurrence. We discover that contributions by species to network co-occurrence predict their recovery under reduction of multiple threats. Highly connected species are likely to benefit more from threat management than poorly connected species. Importantly, we show that information from a few species on co-occurrence and expected responses to alternative threat management actions can be used to train a response model for an entire community. We use a unique management dataset for a threatened bird community to validate our predictions and, in doing so, demonstrate positive feedbacks in occurrence and co-occurrence resulting from shared threat management responses during ecosystem recovery.


Subject(s)
Biodiversity , Birds , Conservation of Natural Resources/methods , Forests , Animals , New South Wales , Species Specificity
13.
PLoS One ; 13(1): e0190748, 2018.
Article in English | MEDLINE | ID: mdl-29293650

ABSTRACT

Managing the biodiversity extinction crisis requires wise decision-making processes able to account for the limited resources available. In most decision problems in conservation biology, several conflicting objectives have to be taken into account. Most methods used in conservation either provide suboptimal solutions or use strong assumptions about the decision-maker's preferences. Our paper reviews some of the existing approaches to solve multi-objective decision problems and presents new multi-objective linear programming formulations of two multi-objective optimization problems in conservation, allowing the use of a reference point approach. Reference point approaches solve multi-objective optimization problems by interactively representing the preferences of the decision-maker with a point in the criteria (objectives) space, called the reference point. We modelled and solved the following two problems in conservation: a dynamic multi-species management problem under uncertainty and a spatial allocation resource management problem. Results show that the reference point method outperforms classic methods while illustrating the use of an interactive methodology for solving combinatorial problems with multiple objectives. The method is general and can be adapted to a wide range of ecological combinatorial problems.


Subject(s)
Conservation of Natural Resources/methods , Problem Solving , Biodiversity , Models, Theoretical
15.
PLoS One ; 12(7): e0180982, 2017.
Article in English | MEDLINE | ID: mdl-28686651

ABSTRACT

Environmental impact assessment (EIA) is used globally to manage the impacts of development projects on the environment, so there is an imperative to demonstrate that it can effectively identify risky projects. However, despite the widespread use of quantitative predictive risk models in areas such as toxicology, ecosystem modelling and water quality, the use of predictive risk tools to assess the overall expected environmental impacts of major construction and development proposals is comparatively rare. A risk-based approach has many potential advantages, including improved prediction and attribution of cause and effect; sensitivity analysis; continual learning; and optimal resource allocation. In this paper we investigate the feasibility of using a Bayesian belief network (BBN) to quantify the likelihood and consequence of non-compliance of new projects based on the occurrence probabilities of a set of expert-defined features. The BBN incorporates expert knowledge and continually improves its predictions based on new data as it is collected. We use simulation to explore the trade-off between the number of data points and the prediction accuracy of the BBN, and find that the BBN could predict risk with 90% accuracy using approximately 1000 data points. Although a further pilot test with real project data is required, our results suggest that a BBN is a promising method to monitor overall risks posed by development within an existing EIA process given a modest investment in data collection.


Subject(s)
Environment , Environmental Monitoring/statistics & numerical data , Risk Management/statistics & numerical data , Architecture/ethics , Australia , Bayes Theorem , Ecosystem , Environmental Monitoring/methods , Humans , Mining/ethics , Risk , Space Flight/ethics , Transportation/ethics , Waste Management/ethics
16.
Nature ; 547(7661): 49-54, 2017 07 06.
Article in English | MEDLINE | ID: mdl-28658207

ABSTRACT

Antarctic terrestrial biodiversity occurs almost exclusively in ice-free areas that cover less than 1% of the continent. Climate change will alter the extent and configuration of ice-free areas, yet the distribution and severity of these effects remain unclear. Here we quantify the impact of twenty-first century climate change on ice-free areas under two Intergovernmental Panel on Climate Change (IPCC) climate forcing scenarios using temperature-index melt modelling. Under the strongest forcing scenario, ice-free areas could expand by over 17,000 km2 by the end of the century, close to a 25% increase. Most of this expansion will occur in the Antarctic Peninsula, where a threefold increase in ice-free area could drastically change the availability and connectivity of biodiversity habitat. Isolated ice-free areas will coalesce, and while the effects on biodiversity are uncertain, we hypothesize that they could eventually lead to increasing regional-scale biotic homogenization, the extinction of less-competitive species and the spread of invasive species.


Subject(s)
Biodiversity , Climate Change/statistics & numerical data , Ice Cover , Animals , Antarctic Regions , Climate Change/history , Conservation of Natural Resources/methods , Conservation of Natural Resources/statistics & numerical data , Conservation of Natural Resources/trends , Ecology/trends , History, 21st Century
17.
Conserv Biol ; 31(3): 646-656, 2017 06.
Article in English | MEDLINE | ID: mdl-27641210

ABSTRACT

Conserving migratory species requires protecting connected habitat along the pathways they travel. Despite recent improvements in tracking animal movements, migratory connectivity remains poorly resolved at a population level for the vast majority of species, thus conservation prioritization is hampered. To address this data limitation, we developed a novel approach to spatial prioritization based on a model of potential connectivity derived from empirical data on species abundance and distance traveled between sites during migration. We applied the approach to migratory shorebirds of the East Asian-Australasian Flyway. Conservation strategies that prioritized sites based on connectivity and abundance metrics together maintained larger populations of birds than strategies that prioritized sites based only on abundance metrics. The conservation value of a site therefore depended on both its capacity to support migratory animals and its position within the migratory pathway; the loss of crucial sites led to partial or total population collapse. We suggest that conservation approaches that prioritize sites supporting large populations of migrants should, where possible, also include data on the spatial arrangement of sites.


Subject(s)
Animal Migration , Conservation of Natural Resources , Uncertainty , Animals , Birds , Ecosystem
18.
Nature ; 539(7627): 31, 2016 11 03.
Article in English | MEDLINE | ID: mdl-27808188
19.
Ecol Appl ; 26(7): 2175-2189, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27755728

ABSTRACT

Changed fire regimes have led to declines of fire-regime-adapted species and loss of biodiversity globally. Fire affects population processes of growth, reproduction, and dispersal in different ways, but there is little guidance about the best fire regime(s) to maintain species population processes in fire-prone ecosystems. We use a process-based approach to determine the best range of fire intervals for keystone plant species in a highly modified Mediterranean ecosystem in southwestern Australia where current fire regimes vary. In highly fragmented areas, fires are few due to limited ignitions and active suppression of wildfire on private land, while in highly connected protected areas fires are frequent and extensive. Using matrix population models, we predict population growth of seven Banksia species under different environmental conditions and patch connectivity, and evaluate the sensitivity of species survival to different fire management strategies and burning intervals. We discover that contrasting, complementary patterns of species life-histories with time since fire result in no single best fire regime. All strategies result in the local patch extinction of at least one species. A small number of burning strategies secure complementary species sets depending on connectivity and post-fire growing conditions. A strategy of no fire always leads to fewer species persisting than prescribed fire or random wildfire, while too-frequent or too-rare burning regimes lead to the possible local extinction of all species. In low landscape connectivity, we find a smaller range of suitable fire intervals, and strategies of prescribed or random burning result in a lower number of species with positive growth rates after 100 years on average compared with burning high connectivity patches. Prescribed fire may reduce or increase extinction risk when applied in combination with wildfire depending on patch connectivity. Poor growing conditions result in a significantly reduced number of species exhibiting positive growth rates after 100 years of management. By exploring the consequences of managing fire, we are able to identify which species are likely to disappear under a given fire regime. Identifying the appropriate complementarity of fire intervals, and their species-specific as well as community-level consequences, is crucial to reduce local extinctions of species in fragmented fire-prone landscapes.


Subject(s)
Conservation of Natural Resources/methods , Plants/classification , Wildfires , Animals , Australia , Ecosystem , Environmental Monitoring , Models, Biological , Population Dynamics , Seeds , Time Factors
20.
Glob Chang Biol ; 21(11): 3917-30, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26179346

ABSTRACT

Climate change is a major threat to global biodiversity, and its impacts can act synergistically to heighten the severity of other threats. Most research on projecting species range shifts under climate change has not been translated to informing priority management strategies on the ground. We develop a prioritization framework to assess strategies for managing threats to biodiversity under climate change and apply it to the management of invasive animal species across one-sixth of the Australian continent, the Lake Eyre Basin. We collected information from key stakeholders and experts on the impacts of invasive animals on 148 of the region's most threatened species and 11 potential strategies. Assisted by models of current distributions of threatened species and their projected distributions, experts estimated the cost, feasibility, and potential benefits of each strategy for improving the persistence of threatened species with and without climate change. We discover that the relative cost-effectiveness of invasive animal control strategies is robust to climate change, with the management of feral pigs being the highest priority for conserving threatened species overall. Complementary sets of strategies to protect as many threatened species as possible under limited budgets change when climate change is considered, with additional strategies required to avoid impending extinctions from the region. Overall, we find that the ranking of strategies by cost-effectiveness was relatively unaffected by including climate change into decision-making, even though the benefits of the strategies were lower. Future climate conditions and impacts on range shifts become most important to consider when designing comprehensive management plans for the control of invasive animals under limited budgets to maximize the number of threatened species that can be protected.


Subject(s)
Biodiversity , Climate Change , Conservation of Natural Resources/methods , Introduced Species , Animals , Australia , Conservation of Natural Resources/economics , Cost-Benefit Analysis , Endangered Species , Models, Biological
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