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Nat Commun ; 9(1): 4619, 2018 11 05.
Article in English | MEDLINE | ID: mdl-30397230

ABSTRACT

Chromatin remodeling is of crucial importance during brain development. Pathogenic alterations of several chromatin remodeling ATPases have been implicated in neurodevelopmental disorders. We describe an index case with a de novo missense mutation in CHD3, identified during whole genome sequencing of a cohort of children with rare speech disorders. To gain a comprehensive view of features associated with disruption of this gene, we use a genotype-driven approach, collecting and characterizing 35 individuals with de novo CHD3 mutations and overlapping phenotypes. Most mutations cluster within the ATPase/helicase domain of the encoded protein. Modeling their impact on the three-dimensional structure demonstrates disturbance of critical binding and interaction motifs. Experimental assays with six of the identified mutations show that a subset directly affects ATPase activity, and all but one yield alterations in chromatin remodeling. We implicate de novo CHD3 mutations in a syndrome characterized by intellectual disability, macrocephaly, and impaired speech and language.


Subject(s)
DNA Helicases/genetics , Developmental Disabilities/genetics , Language Disorders/genetics , Megalencephaly/genetics , Mi-2 Nucleosome Remodeling and Deacetylase Complex/genetics , Mutation, Missense , Neurodevelopmental Disorders/genetics , Protein Domains/genetics , Speech Disorders/genetics , Adenosine Triphosphatases , Child, Preschool , Chromatin Assembly and Disassembly , Female , Gene Expression , Genotype , HEK293 Cells , Humans , Intellectual Disability/genetics , Male , Models, Molecular , Phenotype , Whole Genome Sequencing
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