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1.
Biophys J ; 109(2): 407-14, 2015 Jul 21.
Article in English | MEDLINE | ID: mdl-26200877

ABSTRACT

Embryonic morphogenesis takes place via a series of dramatic collective cell movements. The mechanisms that coordinate these intricate structural transformations across an entire organism are not well understood. In this study, we used gentle mechanical deformation of developing zebrafish embryos to probe the role of physical forces in generating long-range intercellular coordination during epiboly, the process in which the blastoderm spreads over the yolk cell. Geometric distortion of the embryo resulted in nonuniform blastoderm migration and realignment of the anterior-posterior (AP) axis, as defined by the locations at which the head and tail form, toward the new long axis of the embryo and away from the initial animal-vegetal axis defined by the starting location of the blastoderm. We found that local alterations in the rate of blastoderm migration correlated with the local geometry of the embryo. Chemical disruption of the contractile ring of actin and myosin immediately vegetal to the blastoderm margin via Ca(2+) reduction or treatment with blebbistatin restored uniform migration and eliminated AP axis reorientation in mechanically deformed embryos; it also resulted in cellular disorganization at the blastoderm margin. Our results support a model in which tension generated by the contractile actomyosin ring coordinates epiboly on both the organismal and cellular scales. Our observations likewise suggest that the AP axis is distinct from the initial animal-vegetal axis in zebrafish.


Subject(s)
Cell Movement/physiology , Zebrafish/embryology , Actins/metabolism , Animals , Calcium/metabolism , Cations, Divalent/metabolism , Cell Movement/drug effects , Computer Simulation , Extracellular Space/metabolism , Heterocyclic Compounds, 4 or More Rings/administration & dosage , Microscopy, Confocal , Models, Biological , Myosins/metabolism , Physical Stimulation
2.
J Vis Exp ; (65)2012 Jul 25.
Article in English | MEDLINE | ID: mdl-22871786

ABSTRACT

The generation and detection of mechanical forces is a ubiquitous aspect of cell physiology, with direct relevance to cancer metastasis(1), atherogenesis(2) and wound healing(3). In each of these examples, cells both exert force on their surroundings and simultaneously enzymatically remodel the extracellular matrix (ECM). The effect of forces on ECM has thus become an area of considerable interest due to its likely biological and medical importance(4-7). Single molecule techniques such as optical trapping(8), atomic force microscopy(9), and magnetic tweezers(10,11) allow researchers to probe the function of enzymes at a molecular level by exerting forces on individual proteins. Of these techniques, magnetic tweezers (MT) are notable for their low cost and high throughput. MT exert forces in the range of ~1-100 pN and can provide millisecond temporal resolution, qualities that are well matched to the study of enzyme mechanism at the single-molecule level(12). Here we report a highly parallelizable MT assay to study the effect of force on the proteolysis of single protein molecules. We present the specific example of the proteolysis of a trimeric collagen peptide by matrix metalloproteinase 1 (MMP-1); however, this assay can be easily adapted to study other substrates and proteases.


Subject(s)
Magnetics/instrumentation , Peptide Hydrolases/chemistry , Peptide Hydrolases/metabolism , Proteolysis , Amino Acid Sequence , Bacteriophage lambda/chemistry , Bacteriophage lambda/genetics , Collagen/chemistry , Collagen/metabolism , DNA, Viral/chemistry , Matrix Metalloproteinase 1/chemistry , Matrix Metalloproteinase 1/metabolism , Molecular Sequence Data
3.
J Am Chem Soc ; 133(6): 1686-9, 2011 Feb 16.
Article in English | MEDLINE | ID: mdl-21247159

ABSTRACT

Although mechanical stress is known to profoundly influence the composition and structure of the extracellular matrix (ECM), the mechanisms by which this regulation occurs remain poorly understood. We used a single-molecule magnetic tweezers assay to study the effect of force on collagen proteolysis by matrix metalloproteinase-1 (MMP-1). Here we show that the application of ∼10 pN in extensional force causes an ∼100-fold increase in proteolysis rates. Our results support a mechanistic model in which the collagen triple helix unwinds prior to proteolysis. The data and resulting model predict that biologically relevant forces may increase localized ECM proteolysis, suggesting a possible role for mechanical force in the regulation of ECM remodeling.


Subject(s)
Collagen/metabolism , Matrix Metalloproteinase 1/metabolism , Mechanical Phenomena , Proteolysis , Amino Acid Sequence , Collagen/chemistry , Kinetics , Models, Molecular , Molecular Sequence Data , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Protein Multimerization , Protein Structure, Quaternary
4.
Arch Biochem Biophys ; 505(2): 186-93, 2011 Jan 15.
Article in English | MEDLINE | ID: mdl-20933493

ABSTRACT

The cytochrome P450 (CYP) reaction mechanism often yields a broad array of coupled and uncoupled products from a single substrate. While it is well known that reaction conditions can drastically affect the rate of P450 catalysis, their effects on regioselectivity and coupling are not well characterized. To investigate such effects, the CYP1A2 oxidation of 7-ethoxymethoxy-3-cyanocoumarin (EOMCC) was examined as a function of buffer type, buffer concentration, pH, and temperature. A high-throughput, optical method was developed to simultaneously measure the rate of substrate depletion, NADPH depletion, and generation of the O-dealkylated product. Increasing the phosphate buffer concentration and temperature increased both the NADPH and EOMCC depletion rates by 6-fold, whereas coupling was constant at 7.9% and the regioselectivity of O-dealkylation to other coupled pathways was constant at 21.7%. Varying the buffer type and pH increased NADPH depletion by 2.5-fold and EOMCC depletion by 3.5-fold; however, neither coupling nor regioselectivity was constant, with variations of 14.4% and 21.6%, respectively. Because the enzyme-substrate binding interaction is a primary determinant of both coupling and regioselectivity, it is reasonable to conclude that ionic strength, as varied by the buffer concentration, and temperature alter the rate without affecting binding while buffer type and pH alter both.


Subject(s)
Cytochrome P-450 CYP1A2/metabolism , Temperature , Animals , Buffers , Coumarins/chemistry , Coumarins/metabolism , Humans , Hydrogen-Ion Concentration , NADP/metabolism , Osmolar Concentration , Oxidation-Reduction , Protein Binding , Rabbits , Stereoisomerism , Substrate Specificity
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