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1.
Mar Pollut Bull ; 178: 113636, 2022 May.
Article in English | MEDLINE | ID: mdl-35413502

ABSTRACT

This study has been carried out to understand the geochemistry of elements namely, iron (Fe) and phosphorus (P) in the core sediments of an urbanized tropical mangrove ecosystem along the Southwest coast of India. The study revealed the coupling of iron and phosphorus in which the reductive conditions induced reductive dissolution and upward transport of Fe, causing surface coprecipitation of phosphorus incorporated Fe oxyhydroxides. The accumulation and transformation of phosphorus were significantly influenced by processes viz., phosphorus regeneration due to organic matter mineralization and adsorption to inorganic iron oxides/Ca bound minerals in the surface sediments, and phosphorus retention in the sedimentary column by transformation into refractory organic phosphates. Bioavailable phosphorus (BAP) accounted for more than 50% of TP, so that the mangrove sediments act as an important internal nutrient source of iron and phosphorus for coastal eutrophication.


Subject(s)
Iron , Phosphorus , Ecosystem , Eutrophication , Geologic Sediments , Phosphorus/metabolism
2.
Mar Pollut Bull ; 175: 113163, 2022 Feb.
Article in English | MEDLINE | ID: mdl-34838287

ABSTRACT

Distribution and ecological risk assessment of trace metals were carried out in the core sediments of a highly urbanized tropical mangrove ecosystem along the Southwest coast of India. The metal distribution pattern was as follows: Co, Cu, Ni and Pb adsorbed onto Fe oxyhydroxides and fine grained sediments; Cd and Zn preferential adsorption by organic matter and Cr scavenging by Mn oxyhydroxides. Cd, Pb and Zn were significantly enriched in upper sediments, while Cd, Ni and Zn were present in metal exchangeable fractions. Geoaccumulation index (Igeo) suggested that the study area showed moderate to strong pollution of Cd and Zn, whereas unpolluted to moderately polluted with respect to Co, Cr, Cu, Mn, Ni and Pb. Cd enrichment caused high ecological risk, primarily attributed to anthropogenic activities. Mangrove ecosystems are efficient sequester of trace metals but anthropogenic addition can cause significant fraction of exchangeable metals and pose high ecological risk.


Subject(s)
Metals, Heavy , Water Pollutants, Chemical , Ecosystem , Environmental Monitoring/methods , Geologic Sediments , India , Metals, Heavy/analysis , Risk Assessment , Water Pollutants, Chemical/analysis
3.
J Hazard Mater ; 415: 125548, 2021 Aug 05.
Article in English | MEDLINE | ID: mdl-33721779

ABSTRACT

Flexible micro-cellular open porous 3D polymer foam silica aerogel composites with exceptional oil sorption characteristics were prepared by implanting silica aerogel in the interstices of foam substrates. Silica aerogels were engineered from silane precursors namely tetraethoxysilane (TEOS) and methyltrimethoxysilane (MTMS) adopting economical, energy efficient and scalable ambient pressure drying technique. These flexible composites exhibited outstanding structural ruggedness. The foam-aerogel composites deliver superior hydrophobic characteristics in terms of contact angle data. The aerogel composites recorded an oil uptake of 31.3 g per g of the composite for engine oil and the uptake was very swift. Mechanical squeezing enables near complete oil removal from the composites. The foam aerogel composites displayed superior recyclability features, as first time absorption is retained even after 10 cycles of repeated squeezing and re-absorption operations.

4.
Mar Pollut Bull ; 152: 110899, 2020 Mar.
Article in English | MEDLINE | ID: mdl-32479282

ABSTRACT

Distribution and ecological risks of Phthalic acid esters (PAEs) are poorly studied in estuarine environments in India. An attempt is made to chart the sources and assess the ecological risk of six PAE congeners (∑6PAEs), present in dissolved and particulate forms in a tropical ecosystem (Cochin Estuary, India). Terrestrial input, as attested by a clear seasonality with substantial enrichment during monsoon (2-28 µg/L and 31-1203 µg/g; dissolved and particulate PAEs respectively) and post-monsoon (1-7 µg/L and 7-321 µg/g; dissolved and particulate PAEs respectively), was identified as the primary source. DnBP (di-n-butyl phthalate) and DEHP (diethylhexyl phthalate) were found to be the dominant species except for dissolved PAEs at pre-monsoon season. Statistical analysis identified two major clusters, in the ∑6PAEs, composed of medium to high molecular weight PAEs (derived from plastic products) and low molecular weight PAEs (derived from cosmetic products). Calculated Risk Quotient (RQ) indicated values indicated moderate to high ecological risk for DnBP and DEHP congeners is a grim pointer to their detrimental effects on human health through consumption of contaminated organisms. Although substantial enrichment of suspended matter gets flushed out of the estuary during monsoon, there is a net PAE accumulation in the estuary during post-monsoon following an increased sedimentary restitution. Data of PAEs generated herein raises a challenge for immediate enactment of statutory legislation to curb and regulate hazardous contamination of estuaries by phthalic acid esters.


Subject(s)
Estuaries , Phthalic Acids/analysis , China , Dibutyl Phthalate/analysis , Ecosystem , Esters/analysis , Humans , India
5.
J Thyroid Res ; 2020: 5208657, 2020.
Article in English | MEDLINE | ID: mdl-32454966

ABSTRACT

BACKGROUND: Perchlorate is an anion that occurs as a contaminant in groundwater. It originates from the improper disposal of ammonium perchlorate, a component of rocket fuel. The objective of this study was to explore whether the exposure to perchlorate in drinking water had an impact on the thyroid function of the population residing near an ammonium perchlorate plant in Kerala. Methodology. Using an ecological study design, we compared the serum levels of thyroid-stimulating hormone, thyroxine, and thyroid peroxidase antibodies among a representative sample of 289 study subjects from the area surrounding the ammonium perchlorate enrichment plant to 281 study subjects in a control area. RESULTS: The perchlorate concentration in the groundwater varied from 1600 ppb to 57,000 ppb in the 10 samples from the contaminated area and was below 24 ppb in all locations in the control area. No significant differences were found in the mean serum TSH concentration and mean T4 levels between the subjects from the contaminated area and the control area. On regression analysis, perchlorate contamination was not found to be a significant predictor of TSH. CONCLUSION: This study did not find any significant association between perchlorate in drinking water and changes in thyroid hormone levels. Our findings indicate the need for further investigation of this hypothesis using urinary perchlorate as a measure of individual exposure.

6.
Mar Pollut Bull ; 153: 110946, 2020 Apr.
Article in English | MEDLINE | ID: mdl-32063546

ABSTRACT

Core sediment samples were collected from five mangrove ecosystems along northern Kerala coast (Kunjimangalam: S1, Pazhayangadi: S2, Pappinissery: S3, Thalassery: S4, and Kadalundi: S5) to assess the status of heavy metal pollution. S1 recorded comparatively lower metal concentration at surface (except Pb) due to low organic content and sandy texture, while the reverse was true for S3. Higher metal contents were recorded at S5 (0-5 cm), which was attributed to its unique biogeochemical behavior. Enrichment factor and geoaccumulation index indicated moderate enrichment for Cd, and the pollution load index revealed progressive deterioration of sediment quality at S5 (0-5 cm). There was no harmful effect of trace metals on biological community (except Ni) according to Sediment Quality Guidelines. Major processes controlling trace metal accumulation in these systems are diagenetic processes, precipitation of heavy metals as sulfides, and the presence of Fe, Mn-oxy hydroxides, which act as adsorption sites for other metals.


Subject(s)
Environmental Monitoring , Metals, Heavy , Water Pollutants, Chemical , Ecosystem , Geologic Sediments/chemistry , India
7.
Chemosphere ; 210: 232-238, 2018 Nov.
Article in English | MEDLINE | ID: mdl-30005344

ABSTRACT

Phthalic acid esters (PAEs) are a group of endocrine-disrupting chemicals listed as priority pollutants by United States Environmental Protection Agency (USEPA, 2009). This study provides baseline information on seasonal distribution and contamination status of six phthalic acid esters (∑6PAEs) in sediments of a tropical estuary (Cochin-India). In general, the sediments accumulated more PAEs during the post monsoon (mean 2325 ngg-1; between 1402 and 3121 ngg-1) and monsoon (mean 1372 ngg-1; between 331 and 4015 ngg-1) periods indicating land run off as the major transport pathway. Moderate run off and comparatively high residence time lead to effective sorption and settling of PAEs in the surface sediments during post monsoon season. Despite a high discharge of PAEs in to the water column, their deposition on to the sediments occurs at a lower rate during monsoon than that post monsoon season. PAEs were (mean 810 ngg-1; between 44 and 1722 ngg-1) lowest in pre monsoon season. The pre monsoon season is characterized by a minimal runoff consequent to the trapping of these organic pollutants in the river catchment area. The mid and high molecular PAEs (DEHP-Di ethylhexyl phthalate, BBP-Benzyl butyl phthalate and DnBP-Di-n-butyl phthalate) were the dominant congeners relative to the low molecular weight congeners (DMP-Dimethyl phthalate and DEP-Diethyl phthalate). DEHP and BBP levels exceeded permissible risk levels indicating a serious ecological hazard to the estuarine ecosystem.


Subject(s)
Drug Contamination , Environmental Monitoring/methods , Esters/analysis , Estuaries , Geologic Sediments/analysis , Phthalic Acids/analysis , Seasons , India
8.
Mar Pollut Bull ; 114(2): 1081-1087, 2017 Jan 30.
Article in English | MEDLINE | ID: mdl-27729110

ABSTRACT

Polycyclic aromatic hydrocarbons (PAHs) showed significant seasonal dynamics in surface sediments of a tropical ecosystem (Cochin estuary, south west coast of India). Concentrations ranged from 304 to 5874ngg-1 in pre-monsoon, 493 to 14,149ngg-1 in monsoon, and 194 to 10,691ngg-1 in post-monsoon. The estuary was moderately contaminated with low molecular weight PAH fractions, which increased rapidly during the monsoon season indicating land/river runoff as the major transport pathway. The dominance of 2-3 ring fractions in the PAH indicated petrogenic and low temperature combustion processes as major sources, while the very low levels of 5-6 ring components indicated low contribution from pyrolytic sources. Low molecular weight fractions were higher in concentration than the Effective Range-Median (ERM) levels, whereas high molecular weight PAHs were lower than the Effective Range-Low values (ERL). Calculated carcinogenic toxicity equivalents (TEQ) values ranged from 1 to 971ngg-1 in the surface sediments.


Subject(s)
Environmental Monitoring , Geologic Sediments/chemistry , Polycyclic Aromatic Hydrocarbons/analysis , Water Pollutants, Chemical/analysis , Carcinogens , China , Ecosystem , Estuaries , India , Rivers , Seasons
9.
Environ Monit Assess ; 188(6): 366, 2016 Jun.
Article in English | MEDLINE | ID: mdl-27220505

ABSTRACT

The study of phosphorous dynamics in mangrove ecosystems of the northern Kerala coast aims to delineate its relationships with other biogeochemical parameters. Our intension is to check the validity of the hypothesis that these mangrove ecosystems act as an efficient trap of organic phosphorous by acting as P sink. The dissolved inorganic phosphate displayed higher concentration in monsoon that could be correlated with higher P leaching from mangrove litter as well as terrigenous input during wet season. Fe(OOH)≈P was much higher in monsoon (235.23 to 557.70 µg g(-1)) and lower in pre-monsoon (36.50 to 154.97 µg g(-1)), and displayed significant contribution towards the inorganic sedimentary P fractions. In monsoon, adsorption of P on iron hydroxides is enhanced by fresh water conditions, but pre-monsoon is characterised by the reductive dissolution of iron oxy hydroxides and the subsequent efflux of P to water column. CaCO3≈Pinorg may be present as an inert fraction in the sediment matrix, and did not display any interrelationship with other geochemical parameters. The abundant total organic P (25 to 73 %) fractions, largely derived from P bound with humic/fulvic acid, played a major role in immobilising P and regulating its dynamics in the nearby estuarine and coastal environment.


Subject(s)
Geologic Sediments/chemistry , Phosphorus Compounds/chemistry , Phosphorus/chemistry , Water Pollutants, Chemical/chemistry , Wetlands , Ecosystem , Environmental Monitoring , Fresh Water , Geologic Sediments/analysis , India , Iron/chemistry , Phosphorus/analysis , Phosphorus Compounds/analysis , Seasons , Water Pollutants, Chemical/analysis
10.
Environ Monit Assess ; 187(8): 519, 2015 Aug.
Article in English | MEDLINE | ID: mdl-26205283

ABSTRACT

Temporal and spatial variations of heavy metals in the Cochin estuary and its adjacent coastline during three seasons were studied to investigate the impact of anthropogenic heavy metal pollution. Total organic carbon, sand, silt, clay and 10 metals (Cd, Pb, Cr, Ni, Co, Cu, Zn, Mn, Mg and Fe) in the surface sediments were analysed. Multivariate statistical analyses like canonical correspondence analysis, principal component analysis and cluster analysis were used for source identification, integration of geochemical data and clustering of stations based on similarities. Enrichment factor, contamination factor and geoaccumulation index were used to assess the contamination level. From the study, it can be understood that estuary and coast are highly polluted especially with Cd, Zn, Pb and Ni. Anthropogenic influence of heavy metals was evidenced from both the principal component analysis and cluster analysis. Finer fractions (mud) of the sediment and the associated Fe oxy hydroxides might be playing major role in the transport of heavy metals in the system. Very high enrichment factor value observed suggested high anthropogenic pressure in the study area. All the stations in the northern part of the estuary showed very high enrichment factors indicating heavy load of Zn and Cd in this area which might have reached from the industrial area lying to the north side of the Cochin estuary. Pollution indices suggested that both the estuary and its adjacent coast were showing low contamination with respect to Cr, Mg, Mn and Fe; all other metals were causing low to extremely high levels of pollution in the study area.


Subject(s)
Environmental Pollutants/analysis , Estuaries/statistics & numerical data , Geologic Sediments/analysis , Metals, Heavy/analysis , Statistics as Topic , Environmental Monitoring , India , Multivariate Analysis , Seasons
11.
Environ Monit Assess ; 187(3): 56, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25647800

ABSTRACT

Surface sediments samples from the Cochin estuary were measured for elemental, stable isotopic and molecular biomarkers (aliphatic hydrocarbons and fatty acids) to study the sources and distribution of sedimentary organic matter. Concentrations of total organic carbon (TOC), total nitrogen (TN) and stable isotopic ratios of carbon (δ(13)C) ranged from 0.62 to 2.74 %, 0.09 to 0.25 % and -27.5 to 21.7 ‰, respectively. Sedimentary n-alkanes ranged from 6.03 to 43.23 µg g(-1) with an average of 16.79 µg g(-1), while total fatty acids varied from 22.55 to 440.69 µg g(-1). The TOC/TN ratios and δ(13)C suggest a mixture of marine- and terrestrial-derived organic matter in the surface sediments with increasing contributions from marine-derived organic matter towards the seaward side. Long-chain n-alkanes derived from higher plants predominated the inner part of the estuary, while short-chain n-alkanes derived from planktonic sources predominated the bar mouth region. The even carbon preference of the C12-C22 n-alkanes may refer to the direct biogenic contribution from bacteria, fungi and yeast species and to the potential direct petroleum inputs. The presence of odd mid-chain n-alkanes in the sediments indicates the organic matter inputs from submerged and floating macrophytes (water hyacinth). Various molecular indices such as carbon preference index, terrestrial to aquatic ratio, average chain length and the ratios of mid-chain n-alkanes support the aforementioned inferences. The high contribution of odd and branched chain fatty acids along with very low contribution of polyunsaturated fatty acids, suggest the effective utilisation of algae-derived organic matter by bacteria and the effective recycling of labile organic matter in whole settling and deposition processes. The distributional variability of n-alkanes and fatty acids reveals the preferential utilisation of marine-derived organic matter and the selective preservation of terrestrial-derived organic matter in surface sediments of the Cochin estuary.


Subject(s)
Environmental Monitoring , Estuaries , Fatty Acids/analysis , Geologic Sediments/chemistry , Hydrocarbons/analysis , Water Pollutants, Chemical/analysis , Alkanes/analysis , Carbon/analysis , India , Nitrogen/analysis , Petroleum/analysis
12.
Environ Monit Assess ; 185(12): 10317-31, 2013 Dec.
Article in English | MEDLINE | ID: mdl-23832233

ABSTRACT

Trace metal concentrations in the muscle of the bivalve Villorita cyprinoides from the Cochin backwaters (southwest coast of India) were investigated during the monsoon, post-monsoon and pre-monsoon periods. The seasonal average ranges of metals (µg g(-1), dry weight) in the bivalve were as follows: Fe (18,532.44-28,267.05), Co (23.25-37.58), Ni (10.56-19.28), Cu (3.58-11.35), Zn (48.45-139.15), Cd (1.06-1.50) and Pb (3.05-4.35). The marginally elevated metal concentrations in bivalve muscles are probably related to high influx of metals as a result of pollution from the industries and agricultural fields with consequent increased bioavailability of metals to the bivalve. Evaluation of the risks to human health associated with consumption of the bivalves suggested that there is no health risk for moderate shellfish consumers. A regular and continuous biomonitoring program is recommended to establish V. cyprinoides as a bioindicator for assessing the effects of trace metal pollution and to identify future changes to conserve the "health" of this fragile ecosystem.


Subject(s)
Bivalvia/metabolism , Environmental Monitoring , Metals/metabolism , Water Pollutants, Chemical/metabolism , Animals , Ecosystem , India
13.
Environ Monit Assess ; 185(3): 2535-52, 2013 Mar.
Article in English | MEDLINE | ID: mdl-22843296

ABSTRACT

Sequential chemical extraction using chelating agents were used to study the P dynamics and its bioavailability along the surface sediments of the Cochin estuary (southwest coast of India). Sediments were analyzed for major P species (iron bound P, calcium bound P, acid soluble organic P, alkali soluble organic P and residual organic P), Fe, Ca, total carbon, organic carbon, total nitrogen and total sulfur contents. An abrupt increase in the concentration of dissolved inorganic P with increasing salinity was observed in the study region. Iron-bound P exhibited a distinct seasonal pattern with maximum values in the monsoon season when fresh water condition was prevailed in the estuary. As salinity increased, the percentage of iron-bound P decreased, while that of calcium-bound P and total sedimentary sulfur increased. C/P and N/P ratios were low which indicate that large amounts of organic matter enriched with P tend to accumulate in surface sediments. The high organic P contribution in the sedimentary P pool may indicate high organic matter load with incomplete mineralization, as well as comparatively greater percentage of humic substance and resistant organic compounds. Principal component analysis is employed to find the possible processes influencing the speciation of P in the study region and indicate the following processes: (1) the spatial and seasonal variations of calcium bound P and acid soluble organic P was mainly controlled by sediment texture and organic carbon content, (2) sediment redox conditions control the distribution of iron bound P and (3) the terrigenous input of organic P is a significant processes controlling total P content in surface sediments. The bioavailable P was very high in the surface sediments which on an average accounts for 59 % in the pre-monsoon, 65 % in the monsoon and 53 % in the post-monsoon seasons. The surface sediments act as a potential internal source of P in the Cochin estuary.


Subject(s)
Estuaries , Geologic Sediments/chemistry , Phosphorus/analysis , Water Pollutants, Chemical/analysis , Carbon/analysis , Environmental Monitoring , Fresh Water/chemistry , Humic Substances/analysis , India , Nitrogen/analysis , Principal Component Analysis , Seasons , Water Pollution, Chemical/statistics & numerical data
14.
Mar Pollut Bull ; 66(1-2): 239-45, 2013 Jan 15.
Article in English | MEDLINE | ID: mdl-23137554

ABSTRACT

Surface sediments samples were collected from 9 stations of the Cochin estuary during the monsoon, post-monsoon and pre-monsoon seasons and were analyzed for grain size, total organic carbon (OC), total nitrogen (TN) and stable isotopic ratios of carbon (δ¹³C) and nitrogen (δ(¹5N) to identify major sources of organic matter in surface sediments. Sediment grain size is found to be the key factor influencing the organic matter accumulation in surface sediments. The δ¹³C values ranges from -27.5‰ to -21.7‰ in surface sediments with a gradual increase from inner part of the estuary to the seaward side that suggest an increasing contribution of marine autogenous organic matter towards the seaward side. The δ¹5N value varies between 3.1‰ and 6.7‰ and it exhibits complex spatial and seasonal distributions in the study area. It is found that the dynamic cycling of nitrogen through various biogeochemical and organic matter degradation processes modifies the OC/TN ratios and δ¹5N to a considerable degree. The fraction of terrestrial organic matter in the total organic matter pool ranges from 13% to 74% in the surface sediments as estimated by δ¹³C based two end member mixing model.


Subject(s)
Environmental Monitoring , Estuaries , Geologic Sediments/chemistry , Seawater/chemistry , Water Pollutants, Chemical/analysis , Carbon/analysis , Carbon Isotopes , India , Nitrogen/analysis , Nitrogen Isotopes
15.
ScientificWorldJournal ; 2012: 972839, 2012.
Article in English | MEDLINE | ID: mdl-22645488

ABSTRACT

Concentrations and distributions of trace metals (Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, and Zn) in surficial sediments of the Cochin backwaters were studied during both monsoon and pre-monsoon periods. Spatial variations were in accordance with textural charaterstics and organic matter content. A principal component analysis distinguished three zones with different metal accumulation capacity: (i) highest levels in north estuary, (ii) moderate levels in central zone, and (iii) lowest levels in southern part. Trace metal enrichments are mainly due to anthropogenic contribution of industrial, domestic, and agricultural effluents, whose effect is enhanced by settling of metals due to organic flocculation and inorganic precipitation associated with salinity changes. Enrichments factors using Fe as a normalizer showed that metal contamination was the product of anthropogenic activities. An assessment of degree of pollution-categorized sediments as moderately polluted with Cu and Pb, moderately-to-heavily polluted with Zn, and heavily-to-extremely polluted with Cd. Concentrations at many sites largely exceed NOAA ERL (e.g., Cu, Cr, and Pb) or ERM (e.g., Cd, Ni, and Zn). This means that adverse effects for benthic organisms are possible or even highly probable.


Subject(s)
Geologic Sediments/analysis , Metals/analysis , Agriculture , Animals , Ecosystem , Environmental Monitoring/methods , Environmental Pollutants/chemistry , Geography , Humans , India , Metals/chemistry , Organic Chemicals , Principal Component Analysis , Reproducibility of Results , Salts , Seawater , Water Pollutants, Chemical/analysis
16.
Environ Monit Assess ; 174(1-4): 299-312, 2011 Mar.
Article in English | MEDLINE | ID: mdl-20449651

ABSTRACT

Phosphorus fractionation was employed to find the bioavailability of phosphorus and its seasonal variations in the Panangad region of Cochin estuary, the largest estuarine system in the southwest coast of India. Sequential extraction of the surficial sediments using chelating agents was taken as a tool for this. Phosphate in the water column showed seasonal variations, with high values during the monsoon months, suggesting external runoff. Sediment texture was found to be the main factor influencing the spatial distribution of the geochemical parameters in the study region. Similarly, total phosphorus also showed granulometric dependence and it ranged between 319.54 and 2,938.83 µg/g. Calcium-bound fraction was the main phosphorus pool in the estuary. Significant spatial variations were observed for all bioavailable fractions; iron-bound inorganic phosphorus (5.04-474.24 µg/g), calcium-bound inorganic phosphorus (11.16-826.09 µg/g), and acid-soluble organic phosphorus (22.22-365.86 µg/g). Among the non-bioavailable phosphorus, alkali-soluble organic fraction was the major one (51.92-1,002.45 µg/g). Residual organic phosphorus was comparatively smaller fraction (3.25-14.64% of total). The sandy and muddy stations showed distinct fractional composition and the speciation study could endorse the overall geochemical character. There could be buffering of phosphorus, suggested by the increase in the percentage of bioavailable fractions during the lean pre-monsoon period, counteracting the decreases in the external loads. Principal component analysis was employed to find the possible processes influencing the speciation of phosphorus in the study region.


Subject(s)
Geologic Sediments/chemistry , Phosphorus/analysis , Seawater/chemistry , Biological Availability , India , Phosphorus/pharmacokinetics
17.
Appl Bioinformatics ; 5(1): 21-8, 2006.
Article in English | MEDLINE | ID: mdl-16539534

ABSTRACT

Bioinformatics analyses show the presence of a novel insertion sequence-like element in the CTXPhi phage of Vibrio cholerae. The solitary open reading frame encompassed by the element is known to encode a repressor (RstR) of phage DNA replication and is responsible for phage heteroimmunity. Analysis of the nucleotide and protein sequence of the repressor and its flanking non-coding regions indicates that it resembles distinctly simple bacterial insertion elements in numerous aspects. Based on the results of extensive sequence analysis, we propose that the rstR gene is borne on an insertion sequence-like element and that the RstR protein encodes a putative transposase. We put forward the possibility that a bi-directional promoter could regulate the divergent transcription of the neighbouring genes of rstR and rstA. The possibility of overlapping reading frames yielding distinct repressor and transposase proteins is also expanded based on the analyses.


Subject(s)
Bacteriophages/enzymology , Bacteriophages/genetics , DNA Transposable Elements/genetics , Repressor Proteins/genetics , Transposases/genetics , Transposases/metabolism , Vibrio cholerae/virology , Amino Acid Sequence , Chromosome Mapping , Conserved Sequence , Molecular Sequence Data , Transposases/classification , Vibrio cholerae/genetics
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