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Structure ; 14(10): 1499-510, 2006 Oct.
Article in English | MEDLINE | ID: mdl-17027499

ABSTRACT

Structure propensities of amino acids are important determinants in guiding proteins' local and global structure formation. We constructed a phage display library--a hexa-HIS tag upstream of a CXXC (X stands for any of the 20 natural amino acids) motif appending N-terminal to the minor capsid protein pIII of M13KE filamentous phage--and developed a novel directed-evolution procedure to select for amino acid sequences forming increasingly stable beta-turns in the disulfide-bridged CXXC motif. The sequences that emerged from the directed-evolution cycles were in good agreement with type II beta-turn propensities derived from surveys of known protein structures, in particular, Pro-Gly forming a type II beta-turn. The agreement strongly supported the notion that beta-turn formation plays an active role in initiating local structure folding in proteins.


Subject(s)
Bacteriophage M13/genetics , DNA-Binding Proteins/metabolism , Directed Molecular Evolution , Models, Molecular , Peptide Library , Protein Folding , Viral Fusion Proteins/metabolism , Amino Acid Sequence , Bacteriophage M13/metabolism , Base Sequence , Capsid Proteins , DNA-Binding Proteins/genetics , Feasibility Studies , Molecular Sequence Data , Protein Structure, Secondary , Viral Fusion Proteins/genetics
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