Direct fishing and eDNA metabarcoding for biomonitoring during a 3-year survey significantly improves number of fish detected around a South East Asian reservoir.

Biodiversity has to be accurately evaluated to assess more precisely possible dam effects on fish populations, in particular on the most biodiverse rivers such as the Mekong River. To improve tools for fish biodiversity assessment, a methodological survey was performed in the surroundings of a recent hydropower dam in the Mekong basin, the Nam Theun 2 project. Results of two different approaches, experimental surface gillnets capture and environmental DNA metabarcoding assays based on 12S ribosomal RNA and cytochrome b, were compared during 3 years (2014-2016). Pitfalls and benefits were identified for each method but the combined use of both approaches indisputably allows describing more accurately fish diversity around the reservoir. Importantly, striking convergent results were observed for biodiversity reports. 75% of the fish species caught by gillnets (62/82) were shown by the metabarcoding study performed on DNA extracted from water samples. eDNA approach also revealed to be sensitive by detecting 30 supplementary species known as present before the dam construction but never caught by gillnets during 3 years. Furthermore, potential of the marker-genes study might be underestimated since it was not possible to assign some sequences at lower taxonomic levels. Although 121 sequences were generated for this study, a third of species in the area, that exhibits high endemism, are still unknown in DNA databases. Efforts to complete local reference libraries must continue to improve the taxonomic assignment quality when using the non-invasive and promising eDNA approach. These results are of broader interest because of increasing number of hydropower projects in the Mekong Basin. They reveal the crucial importance to sample tissues/DNA of species before dam projects, i.e. before the species could become endangered and difficult to catch, to obtain more precise biomonitoring in the future as we believe eDNA metabarcoding will rapidly be integrated as a standard tool in such studies.

Gross CO2 and CH4 emissions from the Nam Ngum and Nam Leuk sub-tropical reservoirs in Lao PDR.

Gross CO2 and CH4 emissions (degassing and diffusion from the reservoir) and the carbon balance were assessed in 2009-2010 in two Southeast Asian sub-tropical reservoirs: the Nam Ngum and Nam Leuk Reservoirs (Lao PDR). These two reservoirs are within the same climatic area but differ mainly in age, size, residence time and initial biomass stock. The Nam Leuk Reservoir was impounded in 1999 after partial vegetation clearance and burning. However, GHG emissions are still significant 10 years after impoundment. CH4 diffusive flux ranged from 0.8 (January 2010) to 11.9 mmol m(-2) d(-1) (April 2009) and CO2 diffusive flux ranged from -10.6 (October 2009) to 38.2 mmol m(-2) d(-1) (April 2009). These values are comparable to other tropical reservoirs. Moreover, degassing fluxes at the outlet of the powerhouse downstream of the turbines were very low. The tentative annual carbon balance calculation indicates that this reservoir was a carbon source with an annual carbon export (atmosphere+downstream river) of about 2.2±1.0 GgC yr(-1). The Nam Ngum Reservoir was impounded in 1971 without any significant biomass removal. Diffusive and degassing CO2 and CH4 fluxes were lower than for other tropical reservoirs. Particularly, CO2 diffusive fluxes were always negative with values ranging from -21.2 (April 2009) to -2.7 mmol m(-2) d(-1) (January 2010). CH4 diffusive flux ranged from 0.1 (October 2009) to 0.6 mmol m(-2) d(-1) (April 2009) and no degassing downstream of the turbines was measured. As a consequence of these low values, the reservoir was a carbon sink with an estimated annual uptake of - 53±35 GgC yr(-1).

Co-assessment of biomass and soil organic carbon stocks in a future reservoir area located in Southeast Asia.

An assessment of the organic carbon stock present in living or dead vegetation and in the soil on the 450 km2 of the future Nam Theun 2 hydroelectric reservoir in Lao People's Democratic Republic was made. Nine land cover types were defined on the studied area: dense, medium, light, degraded, and riparian forests; agricultural soil; swamps; water; and others (roads, construction sites, and so on). Their geographical distribution was assessed by remote sensing using two 2008 SPOT 5 images. The area is mainly covered by dense and light forests (59%), while agricultural soil and swamps account for 11% and 2%, respectively. For each of these cover types, except water, organic carbon density was measured in the five pools defined by the Intergovernmental Panel on Climate Change: aboveground biomass, litter, deadwood, belowground biomass, and soil organic carbon. The area-weighted mean carbon densities for these pools were estimated at 45.4, 2.0, 2.2, 3.4, and 62.2 tC/ha, respectively, i.e., a total of about 115±15 tC/ha for a soil thickness of 30 cm, corresponding to a total flooded organic carbon stock of 5.1±0.7 MtC. This value is much lower than the carbon density for some South American reservoirs for example where total organic carbon stocks range from 251 to 326 tC/ha. It can be mainly explained by (1) the higher biomass density of South American tropical primary rainforest than of forests in this study and (2) the high proportion of areas with low carbon density, such as agricultural or slash-and-burn zones, in the studied area.

Effect of the filter feeder Daphnia on the particle size distribution of inorganic colloids in freshwaters.

To quantify the effect of the filter feeder Daphnia on the aggregation of mineral particles, temporal changes in the particle size distribution of inorganic colloids were experimentally determined both in the presence and in the absence of Daphnia in water samples of Lake Brienz, Switzerland, an oligotrophic lake rich in suspended inorganic colloids. The results obtained show that daphnids favour the aggregation of mineral colloids, but only for particle sizes above the Daphnia filter mesh size. However, the number concentration of particles smaller than the Daphnia filter mesh size simultaneously increases in the presence of the filter feeder, suggesting either the break-down of existing aggregates or the aggregation of particles with initial sizes below the measured size range. The density of daphnids in this lake is currently too low to have any significant effect on the fate of inorganic colloidal particles as compared with aggregation due to physical processes of particle collision. However, in more productive water bodies where Daphnia is more abundant, they may play a significant role.

Spectromicroscopy mapping of colloidal/particulate organic matter in Lake Brienz, Switzerland.

Transmission electron microscopy (TEM), soft X-ray scanning transmission X-ray microscopy (STXM), and mu-FTIR spectromicroscopy were used to map colloidal/ particulate material in an ultra-oligotrophic lake, Lake Brienz, Switzerland, with a special focus on organic functionality. Within the statistical margin of error and the uncertainties arising from the representativeness of the results, the research reveals that organic material was associated with potassium-rich inorganic colloids present in surface and deep water (depths of 1 and 100 m, respectively), which indicates a vertical transfer of aggregates by sedimentation. Pure organic colloids could only be detected in surface waters. In addition, correlation map analysis of synchrotron-based mu-FTIR and carbon K-edge STXM spectromicroscopic data using spectra from the Lütschine and Aare Rivers as target spectra revealed spectral similarities with organic components from both tributary rivers in deeper regions (100 m) of the lake. The results prove that STXM and mu-FTIR can characterize colloidal and particulate organic material in low organic carbon systems.

Variability of the colloidal molybdate reactive phosphorous concentrations in freshwaters.

Colloidal-size particles play an important, yet not very well understood, role in the speciation of phosphate in freshwaters. This study assesses the size distribution of molybdate reactive phosphorous in various 1.2 microm-filtered freshwaters using cross-flow filtration. Concurrently, colloid size was determined by a single particle counter technique, and mineralogical composition by a combination of transmission electronic microscopy coupled with energy dispersive spectroscopy and selected area electron diffraction. The percentage of colloidal molybdate reactive phosphorous varied a great deal in the samples studied: it ranged from 26% down to only 3%. A direct comparison of the percentages of colloidal-P can be misleading. The simultaneous determination of the amount, size distribution and mineralogical composition of the colloids present in the water bodies proved to be essential for interpreting the results. The causes of the observed variation were numerous and were site-dependent.

A non-perturbing scheme for the mineralogical characterization and quantification of inorganic colloids in natural waters.

Although the role played by inorganic colloids in natural waters depends on their composition as well as on their size, the characterization of submicron particles has rarely gone beyond describing the morphology and identifying some of the most abundant particles. The process of quantification has been hampered by a lack of suitable analytical methods. This study demonstrates that it is possible to identify and quantify inorganic particles in the colloidal size range by applying a straightforward methodology based on a well-proved, quantitative, and nonperturbing method of sample preparation (direct centrifugation of the samples on transmission electron microscopy grids) in conjunction with particle analysis using widely available techniques: transmission electron microscopy, energy dispersive X-ray spectroscopy (EDS), and selected area electron diffraction (SAED). The method has successfully been applied to six water samples from basins of contrasting geological characteristics. The method has the advantage of minimizing sample modifications by allowing on site sample preparation, using standard equipment, and it is not particularly time-consuming. Notably, the combination of EDS and SAED information makes it possible to characterize and quantify the most abundant components of the colloidal pool in the majority of the aquatic systems: the different types of aluminosilicates.

Probing particle size distributions in natural surface waters from 15 nm to 2 microm by a combination of LIBD and single-particle counting.

We present a technique for measuring colloid size distributions between 15 nm and 2 microm at concentrations relevant to natural surface waters. Two particle-measuring methods are combined: laser-induced breakdown detection (LIBD), which allows the quantification of colloid size distributions below 400 nm, and a commercial single-particle counter that extends the accessible size range up to two mum. Centrifugation was used in order to separate micrometer sized particles for the LIBD measurement. The feasibility is demonstrated on water of Lake Brienz (Switzerland) and the River Pfinz (Germany) and the particle size distributions follow Pareto's law even down to 15 nm in both cases.