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1.
Cells ; 13(3)2024 Jan 24.
Article in English | MEDLINE | ID: mdl-38334606

ABSTRACT

Elevation of the intermediate amino acid metabolite Homocysteine (Hcy) causes Hyperhomocysteinemia (HHcy), a metabolic disorder frequently associated with mutations in the methionine-cysteine metabolic cycle as well as with nutritional deficiency and aging. The previous literature suggests that HHcy is a strong risk factor for cardiovascular diseases. Severe HHcy is well-established to correlate with vascular pathologies primarily via endothelial cell death. Though moderate HHcy is more prevalent and associated with an increased risk of cardiovascular abnormalities in later part of life, its precise role in endothelial physiology is largely unknown. In this study, we report that moderate elevation of Hcy causes endothelial dysfunction through impairment of their migration and proliferation. We established that unlike severe elevation of Hcy, moderate HHcy is not associated with suppression of endothelial VEGF/VEGFR transcripts and ROS induction. We further showed that moderate HHcy induces a sub-lethal ER stress that causes defective endothelial migration through abnormal actin cytoskeletal remodeling. We also found that sub-lethal increase in Hcy causes endothelial proliferation defect by suppressing mitochondrial respiration and concomitantly increases glycolysis to compensate the consequential ATP loss and maintain overall energy homeostasis. Finally, analyzing a previously published microarray dataset, we confirmed that these hallmarks of moderate HHcy are conserved in adult endothelial cells as well. Thus, we identified adaptive UPR and metabolic rewiring as two key mechanistic signatures in moderate HHcy-associated endothelial dysfunction. As HHcy is clinically associated with enhanced vascular inflammation and hypercoagulability, identifying these mechanistic pathways may serve as future targets to regulate endothelial function and health.


Subject(s)
Cardiovascular Diseases , Vascular Diseases , Humans , Endothelial Cells/metabolism , Homocysteine/metabolism , Cell Death , Vascular Diseases/metabolism , Cardiovascular Diseases/metabolism
2.
Cell Commun Signal ; 21(1): 258, 2023 09 25.
Article in English | MEDLINE | ID: mdl-37749555

ABSTRACT

Homocysteine (Hcy), produced physiologically in all cells, is an intermediate metabolite of methionine and cysteine metabolism. Hyperhomocysteinemia (HHcy) resulting from an in-born error of metabolism that leads to accumulation of high levels of Hcy, is associated with vascular damage, neurodegeneration and cognitive decline. Using a HHcy model in neuronal cells, primary cortical neurons and transgenic zebrafish, we demonstrate diminished autophagy and Hcy-induced neurotoxicity associated with mitochondrial dysfunction, fragmentation and apoptosis. We find this mitochondrial dysfunction is due to Hcy-induced proteotoxicity leading to ER stress. We show this sustained proteotoxicity originates from the perturbation of upstream autophagic pathways through an aberrant activation of mTOR and that protetoxic stress act as a feedforward cues to aggravate a sustained ER stress that culminate to mitochondrial apoptosis in HHcy model systems. Using chemical chaperones to mitigate sustained ER stress, Hcy-induced proteotoxicity and consequent neurotoxicity were rescued. We also rescue neuronal lethality by activation of autophagy and thereby reducing proteotoxicity and ER stress. Our findings pave the way to devise new strategies for the treatment of neural and cognitive pathologies reported in HHcy, by either activation of upstream autophagy or by suppression of downstream ER stress. Video Abstract.


Subject(s)
Hyperhomocysteinemia , Animals , Zebrafish , Apoptosis , Autophagy , Homocysteine , Quality Control
3.
ACS Chem Neurosci ; 14(16): 2888-2901, 2023 08 16.
Article in English | MEDLINE | ID: mdl-37535852

ABSTRACT

The oligomeric form of amyloid-ß peptide (Aß42) plays a crucial role in the pathogenesis of Alzheimer's disease (AD) and is responsible for cognitive deficits. The soluble oligomers are believed to be more toxic compared to the fibril form. Protein-L-isoaspartyl methyltransferase (PIMT) is a repair enzyme that converts aberrant isoAsp residues, formed spontaneously on isomerization of normal Asp and Asn residues, back to typical Asp. It was shown to inhibit the fibrillization of Aß42 (containing three Asp residues), and here, we investigate its effect on the size, conformation, and toxicity of Aß42 oligomers (AßO). Far-UV CD indicated a shift in the conformational feature of AßOs from the random coil to ß-sheet in the presence of PIMT. Binding of bis-ANS to different AßOs (obtained using different concentrations of Aß42 monomer) indicated the correlation of size of oligomers to hydrophobicity: the smallest AßO having the highest hydrophobicity is the most toxic. Dynamic light scattering showed an increase in size of AßO with the addition of PIMT, a contrasting role to that on Aß fibril. Assays using PC12-derived neurons showed the neuroprotective role of PIMT against AßO-induced toxicity. Furthermore, we have elaborated on the molecular mechanism of the antifibrillar action of PIMT and how this function is correlated with its enzymatic activity. PIMT has a more pronounced effect on AßO as compared to a small heat shock protein, pointing to its importance for the amelioration of the adverse effect of both Aß42 oligomers and fibrils.


Subject(s)
Alzheimer Disease , Protein D-Aspartate-L-Isoaspartate Methyltransferase , Humans , Alzheimer Disease/metabolism , Amyloid beta-Peptides/metabolism , Peptide Fragments/toxicity , Protein D-Aspartate-L-Isoaspartate Methyltransferase/chemistry , Protein D-Aspartate-L-Isoaspartate Methyltransferase/metabolism
4.
Colloids Surf B Biointerfaces ; 204: 111811, 2021 Aug.
Article in English | MEDLINE | ID: mdl-33965751

ABSTRACT

Formation of biofilm by Vibrio cholerae plays a crucial role in pathogenesis and transmission of cholera. Lower infective dose of the biofilm form of V. cholerae compared to the planktonic counterpart, and its antibiotic resistance, make it challenging to combat cholera. Nanoparticles may serve as an effective alternative to conventional antibiotics for targeting biofilms and virulence factors. We explored the effectiveness of gold nanoparticles (AuNPs) of different size and shape (spherical: AuNS10 and AuNS100, and rod: AuNR10, the number indicating the diameter in nm) on both the inhibition of formation and eradication of biofilm of the two biotypes of V. cholerae, classical (VcO395) and El Tor (VcN16961). Inhibition of biofilm formation by spherical AuNPs was observed for both the biotypes. Considering eradication, the biofilms for both, particularly El Tor, was destroyed using both the AuNSs, AuNS100 showing higher efficacy. AuNR10 did not affect the biofilm of either biotype. Micrographs of small intestinal sections of VcO395-infected mice indicated the inhibition of biofilm formation by both AuNSs. We also studied the effect of these AuNPs on the structure of cholera toxin (CT), the major toxin produced by V. cholerae. Far-UV CD showed both AuNR10 and AuNS100 compromised the structure of CT, which was also validated from the reduction of fluid accumulation in mice ileal loop. Western blot analysis revealed the reduction of CT production upon treatment with AuNPs. AuNS100 seems to be the best suited to inhibit the formation or destruction of biofilm, as well as to disrupt CT production and function.


Subject(s)
Metal Nanoparticles , Vibrio cholerae , Animals , Biofilms , Cholera Toxin , Gold , Mice
5.
ACS Appl Bio Mater ; 4(4): 3089-3100, 2021 04 19.
Article in English | MEDLINE | ID: mdl-35014397

ABSTRACT

Because of the emergence of multidrug-resistant pathogenic bacteria, there is a growing interest for the development of an efficient alternative to antibiotics. Gold nanoparticles (AuNPs) are promising candidates due to their inherent non-toxicity and can be used as effective carriers of drugs. Cholera caused by Gram-negative Vibrio cholerae is still a potential threat in many developing countries. Virstatin, a small molecule, has been reported to inhibit virulence regulation in V. cholerae. Herein, we report an efficient synthesis of virstatin-conjugated gold nanoparticles (VL-AuNPs) and their antibacterial efficacy against the El Tor biotype of V. cholerae (VcN16961). The spherical-shaped NPs have an average diameter of ∼17 nm. The uniqueness of VL-AuNPs relies in the enhanced antibacterial efficacy compared to virstatin, as evidenced from the inhibitory concentration obtained from growth kinetics, and attributed to the inhibition of ATPase activity and DNA damage. More importantly, the expression of cholera toxin, the most important virulence factor of V. cholera, is reduced to a far greater extent than by any of the component molecules. The effect of VL-AuNPs on VcN16961 was monitored using various assays such as confocal microscopy, FACS, fluorescence spectroscopy, and so on. Overall, VL-AuNPs could be a potential candidate for the use as an effective agent for combating diarrheal diseases caused by V. cholera.


Subject(s)
Anti-Bacterial Agents/pharmacology , Biocompatible Materials/pharmacology , Butyrates/pharmacology , Gold/pharmacology , Metal Nanoparticles/chemistry , Naphthalimides/pharmacology , Vibrio cholerae O1/drug effects , Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/chemistry , Biocompatible Materials/chemical synthesis , Biocompatible Materials/chemistry , Butyrates/chemistry , Gold/chemistry , Kinetics , Materials Testing , Microbial Sensitivity Tests , Molecular Structure , Naphthalimides/chemistry , Particle Size , Vibrio cholerae O1/growth & development
7.
Biochem Biophys Res Commun ; 528(4): 719-725, 2020 08 06.
Article in English | MEDLINE | ID: mdl-32513537

ABSTRACT

The primary contributor for the determination of skin color is melanin, a pigment that is produced in specialized cells called melanocytes. At cellular level, melanin synthesis occurs through several enzymes like tyrosinase (TYR) and tyrosinase related proteins and the expression of these proteins are regulated transcriptionally by microphthalmia associated transcription factor (MITF). Melanin pigmentation is a complex process finely regulated by different transcription factors, structural proteins and enzymes. In recent times, several autophagic genes have been implicated in the regulation of pigmentation. Though previous report observed a visible loss of coat-color in heterozygous Beclin 1 mice, the role of this protein in pigmentation is yet to study in details. In this present work we intend to study the role of Beclin 1, a central autophagic factor, in pigmentation. Using human melanoma cells and primary melanocytes, we showed that Beclin 1 downregulation significantly decreased the melanin content, tyrosinase activity and the expression of TYR and tyrosinase related protein 1 (TYRP1). These effects were recapitulated in a Beclin 1 knockdown in vivo model of zebrafish. Most importantly, re-expression of Beclin 1 rescued the pigmentation-associated defects both in cellular and in organismal level indicating the specificity. Surprisingly, Beclin 1 knockdown cells did not show significant changes in MITF expression but the nuclear localization of MITF was altered. Together, these data suggest that indeed Beclin 1 is associated with melanogenesis and this effect is more likely exerted through the subcellular distribution rather than the change in expression of MITF.


Subject(s)
Beclin-1/metabolism , Cell Nucleus/metabolism , Melanocytes/metabolism , Microphthalmia-Associated Transcription Factor/metabolism , Animals , Cell Line, Tumor , Cells, Cultured , Humans , Melanins/metabolism , Melanoma/metabolism , Microphthalmia-Associated Transcription Factor/analysis , Pigmentation , Zebrafish
8.
Biochim Biophys Acta Gen Subj ; 1864(3): 129500, 2020 03.
Article in English | MEDLINE | ID: mdl-31785325

ABSTRACT

BACKGROUND: Isomerization of aspartate to isoaspartate (isoAsp) on aging causes protein damage and malfunction. Protein-L-isoaspartyl methyltransferase (PIMT) performs a neuroprotective role by repairing such residues. A hexapeptide, Val-Tyr-Pro-(isoAsp)-His-Ala (VA6), a substrate of PIMT, is shown to form fibrils, while the normal Asp-containing peptide does not. Considering the role of PIMT against epileptic seizure, the combined effect of PIMT and two antiepileptic drugs (AEDs) (valproic acid and stiripentol) was investigated for anti-fibrillation activity. METHODS: Structural/functional modulations due to the binding of AEDs to PIMT were investigated using biophysical techniques. Thioflavin T (ThT) fluorescence assay and microscopic methods were employed to study fibril formation by VA6. In vitro experiments with PC12 cells were carried out with PIMT/AEDs. RESULTS: ThT assay indicated reduction of fibrillation of VA6 by PIMT. AEDs stabilize PIMT, bind close to the cofactor binding site, possibly exerting allosteric effect, increase the enzymatic activity, and anti-fibrillation efficacy. Furthermore, Aß42, implicated in Alzheimer's disease, undergoes ß-sheet to α-helix transition in presence of PIMT. Studies with PC12 derived neurons showed that PIMT and PIMT/AEDs exerted neuroprotective effect against anti-NGF induced neurotoxicity. This was further validated against neurotoxicity induced by Aß42 in primary rat cortical neurons. CONCLUSIONS: The study provides a new perspective to the role isoAsp in protein fibrillation, PIMT in its prevention and AEDs in enhancing the activity of the enzyme. GENERAL SIGNIFICANCE: IsoAsp, with an additional C atom in the main-chain of polypeptide chain, may make it more susceptible to fibrillation. PIMT alone, or in association with AEDs prevents this.


Subject(s)
Amyloid/metabolism , Isoaspartic Acid/metabolism , Protein D-Aspartate-L-Isoaspartate Methyltransferase/metabolism , Alzheimer Disease/metabolism , Amyloid/physiology , Amyloid beta-Peptides/metabolism , Animals , Anticonvulsants/pharmacology , Aspartic Acid/metabolism , Benzothiazoles/metabolism , Brain/metabolism , Dioxolanes/pharmacology , Epilepsy/metabolism , Humans , Isoaspartic Acid/physiology , Neurons/metabolism , PC12 Cells , Peptides/metabolism , Protein D-Aspartate-L-Isoaspartate Methyltransferase/genetics , Protein D-Aspartate-L-Isoaspartate Methyltransferase/physiology , Rats , Structure-Activity Relationship , Valproic Acid/pharmacology
9.
Mar Drugs ; 17(8)2019 Aug 12.
Article in English | MEDLINE | ID: mdl-31409009

ABSTRACT

Formulas derived from theoretical physics provide important insights about the nematocyst discharge process of Cnidaria (Hydra, jellyfishes, box-jellyfishes and sea-anemones). Our model description of the fastest process in living nature raises and answers questions related to the material properties of the cell- and tubule-walls of nematocysts including their polysialic acid (polySia) dependent target function. Since a number of tumor-cells, especially brain-tumor cells such as neuroblastoma tissues carry the polysaccharide chain polySia in similar concentration as fish eggs or fish skin, it makes sense to use these findings for new diagnostic and therapeutic approaches in the field of nanomedicine. Therefore, the nematocyst discharge process can be considered as a bionic blue-print for future nanomedical devices in cancer diagnostics and therapies. This approach is promising because the physical background of this process can be described in a sufficient way with formulas presented here. Additionally, we discuss biophysical and biochemical experiments which will allow us to define proper boundary conditions in order to support our theoretical model approach. PolySia glycans occur in a similar density on malignant tumor cells than on the cell surfaces of Cnidarian predators and preys. The knowledge of the polySia-dependent initiation of the nematocyst discharge process in an intact nematocyte is an essential prerequisite regarding the further development of target-directed nanomedical devices for diagnostic and therapeutic purposes. The theoretical description as well as the computationally and experimentally derived results about the biophysical and biochemical parameters can contribute to a proper design of anti-tumor drug ejecting vessels which use a stylet-tubule system. Especially, the role of nematogalectins is of interest because these bridging proteins contribute as well as special collagen fibers to the elastic band properties. The basic concepts of the nematocyst discharge process inside the tubule cell walls of nematocysts were studied in jellyfishes and in Hydra which are ideal model organisms. Hydra has already been chosen by Alan Turing in order to figure out how the chemical basis of morphogenesis can be described in a fundamental way. This encouraged us to discuss the action of nematocysts in relation to morphological aspects and material requirements. Using these insights, it is now possible to discuss natural and artificial nematocyst-like vessels with optimized properties for a diagnostic and therapeutic use, e.g., in neurooncology. We show here that crucial physical parameters such as pressure thresholds and elasticity properties during the nematocyst discharge process can be described in a consistent and satisfactory way with an impact on the construction of new nanomedical devices.


Subject(s)
Cnidaria/chemistry , N-Acetylneuraminic Acid/chemistry , Nematocyst/chemistry , Animals , Cell Wall/chemistry , Cubozoa/chemistry , Elasticity/drug effects , Humans , Hydra/chemistry , Morphogenesis/drug effects , Nanomedicine/methods
10.
Colloids Surf B Biointerfaces ; 177: 512-519, 2019 May 01.
Article in English | MEDLINE | ID: mdl-30818244

ABSTRACT

Core-shell α-Fe2O3-ZnO structures of different nanotextured morphology were synthesized through wet chemical routes using different solvents like ethanol, ethanolamine, water and acetaldehyde. Morphological tuning using different solvents resulted in the formation of different shapes, such as disc, spindle, rod and sphere (abbreviated as FZ-ND, FZ-NSP, FZ-NR and FZ-NS, respectively). Structural, morphological and compositional characterization of these nanoparticles (NPs) has been carried out. Antibacterial efficacy of the synthesized NPs was checked against Gram negative V. cholerae N16961 (VcN16961) and Gram positive S. aureus bacteria by recording optical density (OD) at different time points. Among the NPs tested, FZ-NSP was found to be the most effective against VcN16961, while FZ-NR showed maximum efficacy against S. aureus, implying the importance of nanotextured surface as well as the morphology in the manifestation of antibacterial activity. The kinetics of growth for both the bacteria has been modelled using logistic approach. Cytotoxicity was evaluated through MTT (3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyltetrazolium bromide) assay against human breast adenocarcinoma cell line (MCF-7), human hepatocarcinoma cell line (HepG2) and against normal human embryonic kidney cell line (HEK-293). The lesser toxicity of α-Fe2O3-ZnO towards HEK-293 and the potent anticancer activity against MCF-7 and HepG2 cells underline its applicability as anticancer agent. With continued improvement of nanotechnology, this study may pave the way for designing and construction of various morphologically diverse, nanotextured materials with desired functional attributes.


Subject(s)
Anti-Bacterial Agents/pharmacology , Antineoplastic Agents/pharmacology , Ferric Compounds/pharmacology , Nanocomposites/chemistry , Staphylococcus aureus/drug effects , Vibrio cholerae/drug effects , Zinc Oxide/pharmacology , Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/chemistry , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/chemistry , Cell Proliferation/drug effects , Dose-Response Relationship, Drug , Drug Screening Assays, Antitumor , Ferric Compounds/chemistry , HEK293 Cells , Hep G2 Cells , Humans , MCF-7 Cells , Particle Size , Surface Properties , Zinc Oxide/chemistry
11.
Appl Radiat Isot ; 139: 127-130, 2018 Sep.
Article in English | MEDLINE | ID: mdl-29758463

ABSTRACT

The response of superheated droplet detectors (SDD) loaded with four different active liquids, R-12 (CCl2F2), R-114 (C2Cl2F4), R-134a (C2H2F4) and R-610 (C4F10) have been studied to obtain the gamma ray detection threshold temperature (Tγ) of the respective detectors. A 137Cs gamma ray source is used for this study. To obtain Tγ from the experimental data a phenomenological model has been used. Result indicates that Tγ maintains a linear relationship with the limit of superheat (Tlim) of different active liquids used in SDD. It indicates that the limit of superheat of a liquid can be used for the prediction of its gamma ray detection threshold temperature.

12.
Sci Rep ; 7(1): 9671, 2017 08 29.
Article in English | MEDLINE | ID: mdl-28851910

ABSTRACT

Emergence of multiple drug resistant strains of pathogenic bacteria calls for new initiatives to combat infectious diseases. Gold nanoparticles (AuNPs), because of their non-toxic nature and size/shape dependent optical properties, offer interesting possibility. Here we report the antibacterial efficacy of AuNPs of different size and shape (AuNS10, AuNS100 and AuNR10; the number indicating the diameter in nm; S stands for sphere and R for rod) against the classical (O395) and El Tor (N16961) biotypes of Vibrio cholerae, the etiological agent responsible for cholera. Growth kinetics was monitored by measuring optical density at different time intervals and fitted by non-linear regression of modified Buchanan model. Sigmoidal growth curve for VcO395 indicated the existence of single phenotype population and was affected by AuNR10 only, implying the importance of morphology of AuNP. Growth of VcN16961 was affected by all three AuNPs indicating the vulnerability of El Tor biotype. Interestingly, VcN16961 exhibited the occurrence of two phenotypic subpopulations - one with shorter (vulnerable Type 1) and the other with extended (tolerant Type 2) lag phase. Various assays were conducted to probe the impact of AuNPs on bacterial cells. Apart from AuNR10, antimicrobial efficacy of AuNS10 was better compared to AuNS100.


Subject(s)
Anti-Bacterial Agents/pharmacology , Gold/pharmacology , Metal Nanoparticles/microbiology , Metal Nanoparticles/ultrastructure , Vibrio cholerae/drug effects , Vibrio cholerae/growth & development , Models, Statistical , Spectrophotometry
13.
Rev Sci Instrum ; 88(6): 066106, 2017 Jun.
Article in English | MEDLINE | ID: mdl-28667990

ABSTRACT

A superheated droplet detector (SDD) consists of a large number of micron-sized superheated liquid drops suspended in a gel medium. The vaporization of a superheated drop is associated with the emission of an acoustic signal. A novel optical method is developed for the detection of this acoustic signal. In this method, a probe-bubble picks up the acoustic signal, and the oscillation of the probe-bubble is detected by employing a laser and phototransistor. The method can detect vaporization of an individual superheated drop in real-time and can be used for studying the response of SDDs to ionizing radiations.

14.
Biochim Biophys Acta Gen Subj ; 1861(5 Pt A): 977-986, 2017 May.
Article in English | MEDLINE | ID: mdl-28215703

ABSTRACT

BACKGROUND: Accessory cholera enterotoxin (Ace) is a classical enterotoxin produced by Vibrio cholerae, the causative agent for cholera. Considering the crucial role of Ace in pathogenesis of cholera, we explored the modulation of structure/function of Ace using gold nanoparticles (AuNPs) of different size and shape - spherical (AuNS10 and AuNS100, the number indicating the diameter in nm) and rod (AuNR10). METHODS: Biophysical techniques have been used to find out structural modulation of Ace by AuNPs. Effect of AuNP on Ace conformation was monitored by far-UV CD; urea-induced unfolding and binding of Ace to various AuNPs were studied by tryptophan fluorescence. In vivo experiments using mouse ileal loop and Ussing chamber were carried out to corroborate biophysical data. RESULTS: Biophysical data revealed degradation of Ace by AuNR10 and AuNS100, not by AuNS10. The feature of AuNR10 having high aspect ratio, but with the same transverse diameter as that of AuNS10 enabled us to explore the importance of morphology on modulation of protein structure/function. The equilibration time for adsorption shows dependence on the radius of curvature, being largest for AuNR10. In vivo experiments revealed the efficacy of AuNR10 and AuNS100 for reduced fluid accumulation, indicative of the loss of activity of Ace. CONCLUSIONS: We show how biophysical studies and in vivo experiments go hand-in-hand in establishing the efficacy and role of size/shape of AuNPs on a toxin structure. GENERAL SIGNIFICANCE: The effect of AuNP on toxin depends on its morphology. The targeted modulation of Ace could be of therapeutic benefit for gastrointestinal disorders.


Subject(s)
Cholera Toxin/chemistry , Cholera Toxin/metabolism , Gold/chemistry , Metal Nanoparticles/chemistry , Vibrio cholerae/chemistry , Vibrio cholerae/metabolism , Animals , Male , Mice , Mice, Inbred C57BL , Particle Size , Structure-Activity Relationship
15.
Arch Biochem Biophys ; 583: 140-9, 2015 Oct 01.
Article in English | MEDLINE | ID: mdl-26255776

ABSTRACT

The repair enzyme Protein L-isoaspartyl-O-methyltransferase (PIMT) is widely distributed in various organisms. PIMT catalyzes S-adenosylmethionine (AdoMet) dependent methylation of abnormal L-isoaspartyl residues, formed by the deamidation of asparagines and isomerization of aspartates. We report the crystal structure of PIMT of Vibrio cholerae (VcPIMT), the aetiological agent for cholera, complexed with the demethylated cofactor S-adenosyl-L-homocysteine (AdoHcy) to 2.05 Å resolution. A stretch of residues (39-58), lining the substrate-binding site, is disordered. Urea-induced unfolding free energy for apo and VcPIMT-AdoHcy complex reveals greater stability for the cofactor-bound protein. The kinetic parameters for the methyltransferase activity of the recombinant VcPIMT was determined using a continuous spectrophotometric color-based assay using the peptide substrate [VYP(L-isoD)HA]. The enzyme exhibited activity higher than the Escherichia coli enzyme and closer to those from thermophilic bacteria and the mammalian source. The association constant for substrate binding is 2.29 × 10(6) M(-1), quite similar to that for AdoHcy. The crystal structure and the model of the peptide-bound structure indicate that the majority of the interactions used for cofactor/substrate binding are provided by the main-chain atoms. Evolutionary relationships derived based on a phylogenetic tree constructed using the PIMT sequences are in conformity with the crystal structures of nine AdoHcy-bound PIMTs.


Subject(s)
Protein D-Aspartate-L-Isoaspartate Methyltransferase/chemistry , Protein D-Aspartate-L-Isoaspartate Methyltransferase/metabolism , S-Adenosylhomocysteine/metabolism , Vibrio cholerae/enzymology , Amino Acid Sequence , Crystallography, X-Ray , Kinetics , Models, Molecular , Molecular Sequence Data , Phylogeny , Protein Binding , Protein Conformation , Protein D-Aspartate-L-Isoaspartate Methyltransferase/classification , Protein Unfolding , Sequence Homology, Amino Acid , Substrate Specificity , Thermodynamics , Urea/chemistry
16.
Biochim Biophys Acta ; 1850(2): 299-306, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25450183

ABSTRACT

BACKGROUND: An alternative to conventional antibiotics is needed to fight against emerging multiple drug resistant pathogenic bacteria. In this endeavor, the effect of silver nanoparticle (Ag-NP) has been studied quantitatively on two common pathogenic bacteria Escherichia coli and Staphylococcus aureus, and the growth curves were modeled. METHODS: The effect of Ag-NP on bacterial growth kinetics was studied by measuring the optical density, and was fitted by non-linear regression using the Logistic and modified Gompertz models. Scanning Electron Microscopy and fluorescence microscopy were used to study the morphological changes of the bacterial cells. Generation of reactive oxygen species for Ag-NP treated cells were measured by fluorescence emission spectra. RESULTS: The modified Gompertz model, incorporating cell death, fits the observed data better than the Logistic model. With increasing concentration of Ag-NP, the growth kinetics of both bacteria shows a decline in growth rate with simultaneous enhancement of death rate constants. The duration of the lag phase was found to increase with Ag-NP concentration. SEM showed morphological changes, while fluorescence microscopy using DAPI showed compaction of DNA for Ag-NP-treated bacterial cells. CONCLUSIONS: E. coli was found to be more susceptible to Ag-NP as compared to S. aureus. The modified Gompertz model, using a death term, was found to be useful in explaining the non-monotonic nature of the growth curve. GENERAL SIGNIFICANCE: The modified Gompertz model derived here is of general nature and can be used to study any microbial growth kinetics under the influence of antimicrobial agents.


Subject(s)
Anti-Bacterial Agents/pharmacology , Escherichia coli K12/growth & development , Metal Nanoparticles/chemistry , Models, Biological , Silver/pharmacology , Staphylococcus aureus/growth & development , Anti-Bacterial Agents/chemistry , Dose-Response Relationship, Drug , Silver/chemistry
17.
Homeopathy ; 103(2): 143-6, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24685420

ABSTRACT

The major objection to homeopathic medicine is that the doses of medicine prescribed in some cases are too dilute for any active ingredient to be present. The medicines would hence be rendered inactive, necessitating novel explanations for the action. A further examination of dilution in the light of the Langmuir equation shows that homeopathic medicines may not be as dilute as a simplistic application of Avogadro's Principle suggests, due to surface effects.


Subject(s)
Homeopathy , Indicator Dilution Techniques , Nanoparticles/analysis , Water/chemistry , Calibration , Humans , Luminescent Measurements/methods , Mathematics , Reproducibility of Results , Solutions/analysis
18.
Appl Radiat Isot ; 90: 1-7, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24675477

ABSTRACT

R-134a (C2H2F4) is a low cost, easily available and chlorine free refrigerant, which in its superheated state can be used as an efficient neutron detector. Due to its high solubility in water the R-134a based superheated droplet detectors (SDD) are usually very unstable unless the detector is fabricated using a suitable additive, which stabilizes the detector. The SDD is known to have superheated droplets distributed in a short-lived and in a relatively long-lived metastable states. We have studied the detector response to neutrons using a (241)AmBe neutron source and obtained the temperature variation of the nucleation parameters and the interstate kinetics of these droplets using a two-state model.

19.
PLoS One ; 7(5): e37468, 2012.
Article in English | MEDLINE | ID: mdl-22649528

ABSTRACT

Virstatin is a small molecule that inhibits Vibrio cholerae virulence regulation, the causative agent for cholera. Here we report the interaction of virstatin with human serum albumin (HSA) using various biophysical methods. The drug binding was monitored using different isomeric forms of HSA (N form ∼pH 7.2, B form ∼pH 9.0 and F form ∼pH 3.5) by absorption and fluorescence spectroscopy. There is a considerable quenching of the intrinsic fluorescence of HSA on binding the drug. The distance (r) between donor (Trp214 in HSA) and acceptor (virstatin), obtained from Forster-type fluorescence resonance energy transfer (FRET), was found to be 3.05 nm. The ITC data revealed that the binding was an enthalpy-driven process and the binding constants K(a) for N and B isomers were found to be 6.09×10(5 )M(-1) and 4.47×10(5) M(-1), respectively. The conformational changes of HSA due to the interaction with the drug were investigated from circular dichroism (CD) and Fourier Transform Infrared (FTIR) spectroscopy. For 1:1 molar ratio of the protein and the drug the far-UV CD spectra showed an increase in α- helicity for all the conformers of HSA, and the protein is stabilized against urea and thermal unfolding. Molecular docking studies revealed possible residues involved in the protein-drug interaction and indicated that virstatin binds to Site I (subdomain IIA), also known as the warfarin binding site.


Subject(s)
Butyrates/chemistry , Butyrates/metabolism , Models, Molecular , Naphthalimides/chemistry , Naphthalimides/metabolism , Serum Albumin/metabolism , Circular Dichroism , Fluorescence Resonance Energy Transfer , Humans , Molecular Structure , Protein Binding , Serum Albumin/chemistry , Spectrometry, Fluorescence , Spectroscopy, Fourier Transform Infrared , Thermodynamics
20.
J Am Soc Mass Spectrom ; 18(7): 1196-205, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17379536

ABSTRACT

The design of an ion mobility source developed to couple to a guided ion beam tandem mass spectrometer is presented. In these exploratory studies, metal ions are created continuously by electron ionization of the volatile hexacarbonyls of the three group 6 transition metals. These ions are focused into a linear hexapole ion trap, which collects the ions and then creates high intensity pulses of ions, avoiding excessive ion losses resulting from the low duty cycle of pulsed operation. The ion pulses are injected into a six-ring drift cell filled with helium where ions having different electronic configurations can separate because they have different ion mobilities. Such separation is observed for chromium ions and compares favorably with the pioneering work of Kemper and Bowers (J. Phys. Chem.1991, 95, 5134). The results are then extended to Mo(+) and W(+), which also show efficient configuration separation. The source conditions needed for high intensities and good configuration separation are discussed in detail and suggestions for further improvements are also provided.

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