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1.
EMBO Rep ; 22(4): e51298, 2021 04 07.
Article in English | MEDLINE | ID: mdl-33594776

ABSTRACT

Notch signaling and epigenetic factors are known to play critical roles in regulating tissue homeostasis in most multicellular organisms, but how Notch signaling coordinates with epigenetic modulators to control differentiation remains poorly understood. Here, we identify heterochromatin protein 1c (HP1c) as an essential epigenetic regulator of gut homeostasis in Drosophila. Specifically, we observe that HP1c loss-of-function phenotypes resemble those observed after Notch signaling perturbation and that HP1c interacts genetically with components of the Notch pathway. HP1c represses the transcription of Notch target genes by directly interacting with Suppressor of Hairless (Su(H)), the key transcription factor of Notch signaling. Moreover, phenotypes caused by depletion of HP1c in Drosophila can be rescued by expressing human HP1γ, suggesting that HP1γ functions similar to HP1c in Drosophila. Taken together, our findings reveal an essential role of HP1c in normal development and gut homeostasis by suppressing Notch signaling.


Subject(s)
Drosophila Proteins , Animals , Chromosomal Proteins, Non-Histone/genetics , Drosophila/genetics , Drosophila Proteins/genetics , Heterochromatin , Homeostasis , Humans , Receptors, Notch/genetics
2.
G3 (Bethesda) ; 10(12): 4483-4488, 2020 12 03.
Article in English | MEDLINE | ID: mdl-33020192

ABSTRACT

The flySAM/CRISPRa system has recently emerged as a powerful tool for gain-of-function studies in Drosophila melanogaster This system includes Gal4/UAS-driven dCas9 activators and U6 promoter-controlled sgRNA. Having established dCas9 activators superior to other combinations, to further enhance the efficiency of the targeting activators we systematically optimized the parameters of the sgRNA. Interestingly, the most efficient sgRNAs were found to accumulate in the region from -150bp to -450bp upstream of the transcription start site (TSS), and the activation efficiency showed a strong positive correlation with the GC content of the sgRNA targeting sequence. In addition, the target region is dominant to the GC content, as sgRNAs targeting areas beyond -600bp from the TSS lose efficiency even when containing 75% GC. Surprisingly, when comparing the activities of sgRNAs targeting to either DNA strand, sgRNAs targeting to the non-template strand outperform those complementary to the template strand, both in cells and in vivo In summary, we define criteria for sgRNA design which will greatly facilitate the application of CRISPRa in gain-of-function studies.


Subject(s)
Drosophila melanogaster , Drosophila , Animals , Base Composition , CRISPR-Cas Systems , Drosophila/genetics , Drosophila melanogaster/genetics , Promoter Regions, Genetic , RNA, Guide, Kinetoplastida/genetics , Transcription Initiation Site
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