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1.
Aging (Albany NY) ; 15(24): 15504-15524, 2023 12 28.
Article in English | MEDLINE | ID: mdl-38157278

ABSTRACT

BACKGROUND: VRK1 is a member of the vaccinia-related kinase (VRK) family of serine/threonine protein kinases, which is related to the occurrence and development of malignant tumors. The expression pattern, predictive value, and biological function of VRK1 in various cancers remain largely elusive and warrant further investigation. METHODS: Public databases, such as TCGA, GTEx, and UCEC, were utilized to comprehensively analyze the expression of VRK1 across multiple cancer types. Prognostic significance was assessed through Univariate Cox regression and Kaplan-Meier analyses. Additionally, Spearman's correlation analysis was employed to explore the potential associations between VRK1 expression and various factors, including tumor microenvironment scores, immune cell infiltration, and immune-related genes. Moreover, to validate the findings, differential expression of VRK1 in HCC tissues and cell lines was further confirmed using qPCR, Western blot, and immunohistochemistry techniques. RESULTS: The upregulation of VRK1 was observed in most cancer types, and was associated with worse prognosis in ACC, KICH, KIRP, LGG, LIHC, LUAD, MESO, and PCPG. In various cancers, VRK1 expression exhibited positive correlations with immune infiltrating cells, immune checkpoint-related genes, TMB, and MSI. Furthermore, the promoter methylation status of VRK1 varied across different tumor types, and this variation was associated with patient prognosis in certain cancers. In our experimental analyses, we observed significantly elevated expression of VRK1 in both HCC tissues and HCC cells. Functionally, we found that the downregulation of VRK1 had a profound impact on HCC cells, leading to a significant decrease in their proliferation, migration, and invasion capabilities. CONCLUSION: The expression of VRK1 exerts a notable influence on the prognosis of several tumors and exhibits a strong correlation with tumor immune infiltration. Moreover, in the context of HCC, VRK1 may act as an oncogene, actively promoting tumor progression.


Subject(s)
Carcinoma, Hepatocellular , Liver Neoplasms , Vaccinia , Humans , Carcinoma, Hepatocellular/genetics , Protein Serine-Threonine Kinases/genetics , Prognosis , Liver Neoplasms/genetics , Serine , Tumor Microenvironment/genetics , Intracellular Signaling Peptides and Proteins
2.
Entropy (Basel) ; 25(11)2023 Nov 16.
Article in English | MEDLINE | ID: mdl-37998242

ABSTRACT

Fault diagnosis of rotating machinery plays an important role in modern industrial machines. In this paper, a modified sparse Bayesian classification model (i.e., Standard_SBC) is utilized to construct the fault diagnosis system of rotating machinery. The features are extracted and adopted as the input of the SBC-based fault diagnosis system, and the kernel neighborhood preserving embedding (KNPE) is proposed to fuse the features. The effectiveness of the fault diagnosis system of rotating machinery based on KNPE and Standard_SBC is validated by utilizing two case studies: rolling bearing fault diagnosis and rotating shaft fault diagnosis. Experimental results show that base on the proposed KNPE, the feature fusion method shows superior performance. The accuracy of case1 and case2 is improved from 93.96% to 99.92% and 98.67% to 99.64%, respectively. To further prove the superiority of the KNPE feature fusion method, the kernel principal component analysis (KPCA) and relevance vector machine (RVM) are utilized, respectively. This study lays the foundation for the feature fusion and fault diagnosis of rotating machinery.

3.
Nat Commun ; 14(1): 2474, 2023 04 29.
Article in English | MEDLINE | ID: mdl-37120596

ABSTRACT

The ribosome-associated quality-control (RQC) pathway degrades aberrant nascent polypeptides arising from ribosome stalling during translation. In mammals, the E3 ligase Pirh2 mediates the degradation of aberrant nascent polypeptides by targeting the C-terminal polyalanine degrons (polyAla/C-degrons). Here, we present the crystal structure of Pirh2 bound to the polyAla/C-degron, which shows that the N-terminal domain and the RING domain of Pirh2 form a narrow groove encapsulating the alanine residues of the polyAla/C-degron. Affinity measurements in vitro and global protein stability assays in cells further demonstrate that Pirh2 recognizes a C-terminal A/S-X-A-A motif for substrate degradation. Taken together, our study provides the molecular basis underlying polyAla/C-degron recognition by Pirh2 and expands the substrate recognition spectrum of Pirh2.


Subject(s)
Mammals , Ubiquitin-Protein Ligases , Animals , Ubiquitin-Protein Ligases/metabolism , Proteolysis , Mammals/metabolism
4.
Molecules ; 27(4)2022 Feb 18.
Article in English | MEDLINE | ID: mdl-35209173

ABSTRACT

Protein N-terminal methyltransferase 1 (NTMT1) recognizes a unique N-terminal X-P-K/R motif (X represents any amino acid other than D/E) and transfers 1-3 methyl groups to the N-terminal region of its substrates. Guided by the co-crystal structures of NTMT1 in complex with the previously reported peptidomimetic inhibitor DC113, we designed and synthesized a series of new peptidomimetic inhibitors. Through a focused optimization of DC113, we discovered a new cell-potent peptidomimetic inhibitor GD562 (IC50 = 0.93 ± 0.04 µM). GD562 exhibited improved inhibition of the cellular N-terminal methylation levels of both the regulator of chromosome condensation 1 and the oncoprotein SET with an IC50 value of ~50 µM in human colorectal cancer HCT116 cells. Notably, the inhibitory activity of GD562 for the SET protein increased over 6-fold compared with the previously reported cell-potent inhibitor DC541. Furthermore, GD562 also exhibited over 100-fold selectivity for NTMT1 against several other methyltransferases. Thus, this study provides a valuable probe to investigate the biological functions of NTMT1.


Subject(s)
Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Methyltransferases/antagonists & inhibitors , Peptidomimetics/chemistry , Peptidomimetics/pharmacology , Binding Sites , Dose-Response Relationship, Drug , Drug Design , Humans , Methylation , Models, Molecular , Molecular Conformation , Molecular Structure , Protein Binding , Structure-Activity Relationship
5.
Acta Pharm Sin B ; 11(9): 2709-2718, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34589391

ABSTRACT

Protein arginine methyltransferases (PRMTs) have been implicated in the progression of many diseases. Understanding substrate recognition and specificity of individual PRMT would facilitate the discovery of selective inhibitors towards future drug discovery. Herein, we reported the design and synthesis of bisubstrate analogues for PRMTs that incorporate a S-adenosylmethionine (SAM) analogue moiety and a tripeptide through an alkyl substituted guanidino group. Compound AH237 is a potent and selective inhibitor for PRMT4 and PRMT5 with a half-maximal inhibition concentration (IC50) of 2.8 and 0.42 nmol/L, respectively. Computational studies provided a plausible explanation for the high potency and selectivity of AH237 for PRMT4/5 over other 40 methyltransferases. This proof-of-principle study outlines an applicable strategy to develop potent and selective bisubstrate inhibitors for PRMTs, providing valuable probes for future structural studies.

6.
ACS Chem Biol ; 16(7): 1234-1242, 2021 07 16.
Article in English | MEDLINE | ID: mdl-34192867

ABSTRACT

Understanding the selectivity of methyltransferase inhibitors is important to dissecting the functions of each methyltransferase target. From this perspective, we report a chemoproteomic study to profile the selectivity of a potent protein N-terminal methyltransferase 1 (NTMT1) bisubstrate inhibitor NAH-C3-GPKK (Ki, app = 7 ± 1 nM) in endogenous proteomes. First, we describe the rational design, synthesis, and biochemical characterization of a new chemical probe 6, a biotinylated analogue of NAH-C3-GPKK. Next, we systematically analyze protein networks that may selectively interact with the biotinylated probe 6 in concert with the competitor NAH-C3-GPKK. Besides NTMT1, the designated NTMT1 bisubstrate inhibitor NAH-C3-GPKK was found to also potently inhibit a methyltransferase complex HemK2-Trm112 (also known as KMT9-Trm112), highlighting the importance of systematic selectivity profiling. Furthermore, this is the first potent inhibitor for HemK2/KMT9 reported until now. Thus, our studies lay the foundation for future efforts to develop selective inhibitors for either methyltransferase.


Subject(s)
Adenosine/analogs & derivatives , Adenosine/pharmacology , Enzyme Inhibitors/pharmacology , Methyltransferases/antagonists & inhibitors , Oligopeptides/pharmacology , Site-Specific DNA-Methyltransferase (Adenine-Specific)/antagonists & inhibitors , Adenosine/metabolism , Crystallography, X-Ray , Drug Design , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/metabolism , HeLa Cells , Humans , Methyltransferases/metabolism , Oligopeptides/chemical synthesis , Oligopeptides/metabolism , Protein Binding
7.
ACS Med Chem Lett ; 12(3): 485-493, 2021 Mar 11.
Article in English | MEDLINE | ID: mdl-33738076

ABSTRACT

Protein N-terminal methyltransferases (NTMTs) catalyze the methylation of the α-N-terminal amines of proteins starting with an X-P-K/R motif. NTMT1 has been implicated in various cancers and in aging, implying its role as a potential therapeutic target. Through structural modifications of a lead NTMT1 inhibitor, BM30, we designed and synthesized a diverse set of inhibitors to probe the NTMT1 active site. The incorporation of a naphthyl group at the N-terminal region and an ortho-aminobenzoic amide at the C-terminal region of BM30 generates the top cell-potent inhibitor DC541, demonstrating increased activity on both purified NTMT1 (IC50 of 0.34 ± 0.02 µM) and the cellular α-N-terminal methylation level of regulator of chromosome condensation 1 (RCC1, IC50 value of 30 µM) in human colorectal cancer HT29 cells. Furthermore, DC541 exhibits over 300-fold selectivity to several methyltransferases. This study points out the direction for the development of more cell-potent inhibitors for NTMT1.

8.
Mar Pollut Bull ; 162: 111898, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33316704

ABSTRACT

The spatial distribution of microzooplankton in the northern South China Sea was investigated in March 2016. Microzooplankton communities were dominated by cyclotrichids, aloricate oligotrichs, and choreotrichs within ciliates and the order Gymnodiniales within dinoflagellates. Microzooplankton abundance varied between 60 and 166,520 cells L-1, with higher values in the coastal diluted water, and microzooplankton biomass exhibiting a similar pattern. High densities of Akashiwo cf. sanguinea were found in the upper waters along the coast, and mixotrophs dominated the communities in all the water masses. A canonical analysis of principal coordinates showed that the spatial patterns of microzooplankton communities could be clearly discriminated in the different water masses. Our findings provide insights into the functioning of microzooplankton and the potential risk of harmful Akashiwo cf. sanguinea algal blooms in coastal waters. In addition, our study provides evidence for using microzooplankton communities as potential indicators of water masses in complex marine systems.


Subject(s)
Ciliophora , Dinoflagellida , China , Food Chain , Harmful Algal Bloom
9.
J Med Chem ; 63(17): 9512-9522, 2020 09 10.
Article in English | MEDLINE | ID: mdl-32689795

ABSTRACT

Protein N-terminal methyltransferases (NTMTs) methylate the α-N-terminal amines of proteins starting with the canonical X-P-K/R motif. Genetic studies imply that NTMT1 regulates cell mitosis and DNA damage repair. Herein, we report the rational design and development of the first potent peptidomimetic inhibitor for NTMT1/2. Biochemical and cocrystallization studies manifest that BM30 (with a half-maximal inhibitory concentration of 0.89 ± 0.10 µM) is a competitive inhibitor to the peptide substrate and noncompetitive to the cofactor S-adenosylmethionine. BM30 exhibits over 100-fold selectivity to NTMT1/2 among a panel of 41 MTs, indicating its potential to achieve high selectivity when targeting the peptide substrate binding site of NTMT1/2. Its cell-permeable analogue DC432 (IC50 of 54 ± 4 nM) decreases the N-terminal methylation level of the regulator of chromosome condensation 1 and SET proteins in HCT116 cells. This proof-of principle study provides valuable probes for NTMT1/2 and highlights the opportunity to develop more cell-potent inhibitors to elucidate the function of NTMTs in the future.


Subject(s)
Drug Design , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/pharmacology , Methyltransferases/antagonists & inhibitors , Peptidomimetics/chemical synthesis , Peptidomimetics/pharmacology , Chemistry Techniques, Synthetic , Crystallography, X-Ray , Enzyme Inhibitors/chemistry , HCT116 Cells , Humans , Methylation , Methyltransferases/chemistry , Models, Molecular , Peptidomimetics/chemistry , Protein Conformation
10.
J Med Chem ; 63(15): 8419-8431, 2020 08 13.
Article in English | MEDLINE | ID: mdl-32605369

ABSTRACT

The bisubstrate analogue strategy is a promising approach to develop potent and selective inhibitors for protein methyltransferases. Herein, the interactions of a series of bisubstrate analogues with protein N-terminal methyltransferase 1 (NTMT1) were examined to probe the molecular properties of the active site of NTMT1. Our results indicate that a 2-C to 4-C atom linker enables its respective bisubstrate analogue to occupy both substrate- and cofactor-binding sites of NTMT1, but the bisubstrate analogue with a 5-C atom linker only interacts with the substrate-binding site and functions as a substrate. Furthermore, the 4-C atom linker is the optimal and produces the most potent inhibitor (Ki,app = 130 ± 40 pM) for NTMT1 to date, displaying more than 3000-fold selectivity for other methyltransferases and even for its homologue NTMT2. This study reveals the molecular basis for the plasticity of the active site of NTMT1. Additionally, our study outlines general guidance on the development of bisubstrate inhibitors for any methyltransferases.


Subject(s)
Catalytic Domain , Methyltransferases/chemistry , Binding Sites/drug effects , Catalytic Domain/drug effects , Crystallography, X-Ray , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Humans , Methyltransferases/metabolism , Models, Molecular , Substrate Specificity/drug effects
11.
J Med Chem ; 62(23): 10783-10797, 2019 12 12.
Article in English | MEDLINE | ID: mdl-31724854

ABSTRACT

Nicotinamide N-methyltransferase (NNMT) catalyzes the methyl transfer from the cofactor S-adenosylmethionine to nicotinamide and other pyridine-containing compounds. NNMT is an important regulator for nicotinamide metabolism and methylation potential. Aberrant expression levels of NNMT have been implicated in cancer, metabolic, and neurodegenerative diseases, which makes NNMT a potential therapeutic target. Therefore, potent and selective NNMT inhibitors can serve as valuable tools to investigate the roles of NNMT in its mediated diseases. Here, we applied a rational strategy to design and synthesize the tight-binding bisubstrate inhibitor LL320 through a novel propargyl linker. LL320 demonstrates a Ki value of 1.6 ± 0.3 nM, which is the most potent inhibitor to date. The cocrystal structure of LL320 confirms its interaction with both the substrate and cofactor binding sites on NNMT. Importantly, this is the first example of using the propargyl linker to construct potent methyltransferase inhibitors, which will expand our understanding of the transition state of methyl transfer.


Subject(s)
Aspartic Acid/analogs & derivatives , Benzamides/pharmacology , Nicotinamide N-Methyltransferase/antagonists & inhibitors , Aspartic Acid/chemistry , Aspartic Acid/pharmacology , Benzamides/chemistry , Drug Design , HCT116 Cells , Humans , Nicotinamide N-Methyltransferase/metabolism , Permeability , Protein Binding
12.
Comput Methods Programs Biomed ; 177: 183-192, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31319947

ABSTRACT

BACKGROUND AND OBJECTIVE: Atrial fibrillation (AF) is one of the common cardiovascular diseases, and electrocardiography (ECG) is a key indicator for the detection and diagnosis of AF and other heart diseases. In this study, an improved machine learning method is proposed for rapid modeling and accurate diagnosis of AF. METHODS: This paper presents a novel IRBF-RVM model that combines the integrated radial basis function (IRBF) and relevance vector machine (RVM), which is utilized for the diagnosis of AF. The synchronous 12-lead ECG signals are collected from the human body surface so as to fully reflect the electrical activity of the whole heart. RR intervals of the QRS-waves in ECG signals are obtained by means of the classical Pan-Tompkins algorithm. The RR-features extracted from RR intervals are adopted as the diagnostic features for AF patients. In addition, the conventional RBF-RVM model, support vector machine (SVM) and other machine learning methods are also investigated for the diagnosis of AF so as to reflect the advantage of the proposed IRBF-RVM model. The open MIT-BIH arrhythmia database (MITDB) is also used to evaluate the predictive performance of these state-of-the-art methods. RESULTS: Altogether 1056 AF patients and 904 healthy people are participated in this study and validate the effectiveness of each channel of the 12-lead ECG signals. Experimental results show that the classification rate of IRBF-RVM can reach up to 98.16% by recurring to Channel II of the 12-lead ECG signals. CONCLUSIONS: IRBF-RVM absorbs the advantages of IRBF, which makes the kernel parameter of IRBF-RVM have a much larger selectable region than RBF-RVM. In addition, RVM has faster modeling and recognition speed in comparison with SVM. This work lays the foundation for the application of RVM to accurate diagnosis of AF.


Subject(s)
Atrial Fibrillation/diagnostic imaging , Diagnosis, Computer-Assisted , Electrocardiography , Signal Processing, Computer-Assisted , Support Vector Machine , Bayes Theorem , Data Collection , Databases, Factual , Heart Diseases , Humans , Models, Statistical , Normal Distribution , Probability , Reproducibility of Results
13.
J Med Chem ; 62(7): 3773-3779, 2019 04 11.
Article in English | MEDLINE | ID: mdl-30883119

ABSTRACT

Protein N-terminal methyltransferase 1 (NTMT1) plays an important role in regulating mitosis and DNA repair. Here, we describe the discovery of a potent NTMT1 bisubstrate inhibitor 4 (IC50 = 35 ± 2 nM) that exhibits greater than 100-fold selectivity against a panel of methyltransferases. We also report the first crystal structure of NTMT1 in complex with an inhibitor, which revealed that 4 occupies substrate and cofactor binding sites of NTMT1.


Subject(s)
Methyltransferases/antagonists & inhibitors , Crystallography, X-Ray , Methylation , Methyltransferases/chemistry , Methyltransferases/metabolism , Protein Conformation , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Substrate Specificity
14.
Bioorg Med Chem ; 25(2): 458-470, 2017 01 15.
Article in English | MEDLINE | ID: mdl-27884512

ABSTRACT

Ten derivatives of 4-((1,2,3,4-tetrahydrobenzo[4,5]imidazo[1,2-a]pyrazin-1-yl)methyl)benzimida-mide (I-1∼I-2, II-1∼II-8) were designed, synthesized and evaluated for their inhibitory effect on human thrombin. Compound II-7 (IC50=82.8nM), which showed the strongest thrombin inhibitory activity among the tested compounds, was chosen as the lead compound, and ten carbamate derivatives (II-9a∼II-13a, II-9b∼II-12b, II-14) were prepared and evaluated for their anticoagulant activity. The results indicate that most of the tested compounds exhibit a certain degree of inhibitory effect on thrombin-induced platelet aggregation, among which compounds II-11a (IC50=8.16µM) and II-14 (IC50=1.95µM) show better anti-platelet aggregation activity than the others. The in vivo experimental results in rat venous thrombosis model also demonstrate compounds II-11a and II-14 can significantly reduce thrombosis in a dose-response manner. It is worth pointing out that the enhanced potency of compound II-14 may be the synergetic effect of 2-hydroxymethyl-3,5,6-trimethylpyrazine (HTMP) and II-7 which are generated by hydrolysis in vivo.


Subject(s)
Drug Design , Fibrinolytic Agents/chemical synthesis , Fibrinolytic Agents/pharmacology , Thrombin/antagonists & inhibitors , Animals , Dose-Response Relationship, Drug , Fibrinolytic Agents/administration & dosage , Humans , Male , Molecular Structure , Platelet Aggregation/drug effects , Rats , Rats, Sprague-Dawley , Structure-Activity Relationship , Thrombin/metabolism , Venous Thrombosis/drug therapy , Venous Thrombosis/metabolism
15.
Bioorg Med Chem ; 23(23): 7405-16, 2015 Dec 01.
Article in English | MEDLINE | ID: mdl-26537784

ABSTRACT

Thrombin is a serine protease that plays a key role in blood clotting, which makes it a promising target for the treatment of thrombotic diseases. Dabigatran is direct potent thrombin inhibitor. Based on bioisosteric and scaffold hopping principle, two dabigatran mimics (I-1 and II-1) in which the benzamidine moiety of dabigatran was replaced by a tricyclic fused scaffold were designed, synthesized and evaluated for their in vitro activities for inhibiting thrombin. The results reveal that compounds I-1 (IC50=9.20nM) and II-1 (IC50=7.48nM) are potent direct thrombin inhibitors and the activity is in the range of reference drug. On this basis, twenty-two ester and carbamate derivatives of I-1 or II-1 were prepared and evaluated for their anticoagulant activity. Prodrugs I-4a (IC50=0.73µM), I-4b (IC50=0.75µM), II-2a (IC50=1.44µM) and II-2b (IC50=0.91µM) display excellent effects of inhibiting thrombin induced-platelet aggregation. Moreover, compounds I-9 and II-4, which contain a cleavable moiety with anti-platelet activity, show the best anticoagulant efficacy among the tested compounds in the rat venous thrombosis model. The compounds which have better in vitro and in vivo activity were subjected to rat tail bleeding test, and the result demonstrates that compound I-9 is less likely to have bleeding risk than dabigatran etexilate.


Subject(s)
Anticoagulants/pharmacology , Dabigatran/analogs & derivatives , Dabigatran/pharmacology , Platelet Aggregation Inhibitors/pharmacology , Thrombin/antagonists & inhibitors , Animals , Anticoagulants/chemical synthesis , Anticoagulants/chemistry , Dabigatran/chemical synthesis , Dabigatran/chemistry , Humans , Male , Mice , Molecular Docking Simulation , Platelet Aggregation Inhibitors/chemical synthesis , Platelet Aggregation Inhibitors/chemistry , Prodrugs/chemical synthesis , Prodrugs/chemistry , Prodrugs/pharmacology , Rabbits , Rats , Rats, Sprague-Dawley
16.
Bioorg Med Chem Lett ; 25(3): 431-4, 2015 Feb 01.
Article in English | MEDLINE | ID: mdl-25556101

ABSTRACT

A series of indole-3-carboxylic acids were designed as novel small molecular non-ATP-competitive Plk1 inhibitors. The designed compounds were synthesized and evaluated. Most of the targeted compounds showed potent Plk1 inhibitory activities and anti-proliferative characters. Particularly, 4f and 4g showed Plk1 inhibitory activity with IC50 values of 0.41 and 0.13µM, which were about 5 and 17 times more potent compared to thymoquinone, respectively. Compound 4g also showed inhibitory activity to HeLa and MCF-7 cell lines with IC50 values of 0.72 and 1.15µM, which was almost 3 and 4 times more potent than thymoquinone. Study of mechanism of action suggested that 4g was an ATP-independent and substrate-dependent Plk1 inhibitor. Moreover, 4g showed excellent Plk1 inhibitory selectivity against Plk2 and Plk3. Fluorescein isothiocyanate Annexin V/propidium iodide (PI) double-staining assay and western-blot results indicate that induction of apoptosis by 4g is involved in its anti-tumor activity. This study may provide a support for further optimization of non-ATP-competitive Plk1 inhibitors.


Subject(s)
Cell Cycle Proteins/antagonists & inhibitors , Indoles/chemistry , Protein Kinase Inhibitors/chemistry , Protein Serine-Threonine Kinases/antagonists & inhibitors , Proto-Oncogene Proteins/antagonists & inhibitors , Adenosine Triphosphate/chemistry , Adenosine Triphosphate/metabolism , Antineoplastic Agents/chemistry , Antineoplastic Agents/metabolism , Antineoplastic Agents/toxicity , Apoptosis/drug effects , Benzoquinones/chemistry , Benzoquinones/metabolism , Cell Cycle Proteins/metabolism , HeLa Cells , Humans , Indoles/metabolism , Indoles/toxicity , MCF-7 Cells , Protein Binding , Protein Kinase Inhibitors/metabolism , Protein Kinase Inhibitors/toxicity , Protein Serine-Threonine Kinases/metabolism , Proto-Oncogene Proteins/metabolism , Structure-Activity Relationship , Polo-Like Kinase 1
17.
Arch Pharm (Weinheim) ; 348(1): 2-9, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25430493

ABSTRACT

A series of small-molecule Plk1 inhibitors targeting the substrate-binding pocket were designed through rational drug design for the first time. The designed compounds were synthesized and their activities were evaluated in vitro. Some of the targeted compounds showed potent Plk1 inhibitory activities and anti-proliferative characters. Particularly, 5i showed Plk1 inhibitory activity with an IC50 value of 0.68 µM. Compound 5i also showed cell growth inhibitory activity on HeLa cells with an IC50 value of 0.51 µM, which is about four times more potent compared to thymoquinone. The mechanism of action suggested that 5i was an ATP-independent and substrate-dependent Plk1 inhibitor. Compound 5i demonstrated excellent Plk1 inhibitory selectivity against Plk2, Plk3, and five serine/threonine and tyrosine kinases. Our discovery and structure-activity relationship study may provide useful lead compounds for further optimization of non-ATP-competitive Plk1 inhibitors.


Subject(s)
Adenosine Triphosphate/metabolism , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/pharmacology , Cell Cycle Proteins/antagonists & inhibitors , Cell Proliferation/drug effects , Drug Design , Protein Kinase Inhibitors/chemical synthesis , Protein Kinase Inhibitors/pharmacology , Protein Serine-Threonine Kinases/antagonists & inhibitors , Proto-Oncogene Proteins/antagonists & inhibitors , Binding Sites , Cell Cycle Proteins/chemistry , Cell Cycle Proteins/metabolism , Computer-Aided Design , Dose-Response Relationship, Drug , HeLa Cells , Humans , Inhibitory Concentration 50 , MCF-7 Cells , Molecular Docking Simulation , Molecular Structure , Protein Conformation , Protein Serine-Threonine Kinases/chemistry , Protein Serine-Threonine Kinases/metabolism , Proto-Oncogene Proteins/chemistry , Proto-Oncogene Proteins/metabolism , Signal Transduction/drug effects , Structure-Activity Relationship , Polo-Like Kinase 1
18.
J Cell Physiol ; 229(11): 1607-17, 2014 Nov.
Article in English | MEDLINE | ID: mdl-24604556

ABSTRACT

The transcriptional cofactor Jab1 controls cell proliferation, apoptosis, and differentiation in diverse developmental processes by regulating the activity of various transcription factors. To determine the role of Jab1 during early limb development, we developed a novel Jab1(flox/flox) ; Prx1-Cre conditional Knockout (cKO) mutant mouse model in which Jab1 was deleted in the osteochondral progenitor cells of the limb buds. Jab1 cKO mutant mice displayed drastically shortened limbs at birth. The short-limb defect became apparent in Jab1 cKO mutants at E15.5 and increasingly worsened thereafter. By E18.5, Jab1 cKO mutant mice exhibited significantly shorter limbs with: very few hypertrophic chondrocytes, disorganized chondrocyte columns, much smaller primary ossification centers, and significantly increased apoptosis. Real-time RT-PCR analysis showed decreased expression of Sox9, Col2a1, Ihh, and Col10a1 in Jab1 cKO mutant long bones, indicating impaired chondrogenesis. Furthermore, in a micromass culture model of early limb mesenchyme cells, alcian blue staining showed a significant decrease in chondrogenesis in Jab1 cKO limb bud cells. The expression of Sox9 and its downstream targets Col2a1 and Aggrecan, as well as BMP signaling downstream targets, Noggin, Id1, and Ihh, were significantly decreased in Jab1 cKO micromass cultures. Moreover, over-expression of SOX9 in Jab1 cKO micromass cultures partially restored Col2a1and Aggrecan expression. Jab1-deficient micromass cultures also exhibited decreased BMP signaling response and reduced BMP-specific reporter activity ex vivo. In summary, our study demonstrates that Jab1 is an essential regulator of early embryonic limb development in vivo, likely in part by co-activating Sox9 and BMP signaling.


Subject(s)
Chondrocytes/metabolism , Embryonic Development , Extremities/embryology , Intracellular Signaling Peptides and Proteins/metabolism , Peptide Hydrolases/metabolism , Animals , Apoptosis , Biomarkers/metabolism , Bone Morphogenetic Proteins/metabolism , COP9 Signalosome Complex , Calcification, Physiologic , Cell Differentiation , Cells, Cultured , Chondrocytes/cytology , Chondrogenesis , Gene Deletion , Homeodomain Proteins/metabolism , Intracellular Signaling Peptides and Proteins/genetics , Mice , Mice, Knockout , Osteoblasts/cytology , Osteogenesis , Peptide Hydrolases/genetics , SOX9 Transcription Factor/metabolism , Signal Transduction , Stem Cells/cytology , Stem Cells/metabolism
19.
Rheumatology (Oxford) ; 52(6): 998-1008, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23392593

ABSTRACT

OBJECTIVE: In OA, there is enhanced expression of pro-inflammatory cytokines such as IL-1ß in the affected joint. Delphinidin, an anthocyanidin found in pigmented fruits and vegetables, has been shown to possess anti-inflammatory and antioxidant properties. In the present study we determined whether delphinidin would inhibit the IL-1ß-induced activation of NF-κB in human chondrocytes and determined the mechanism of its action. METHODS: PGE2 levels and activation of NF-κB p65 in human OA chondrocytes were determined by ELISA-based assays. Protein expression of cyclo-oxygenase-2 (COX-2) and phosphorylation of kinases was determined by western immunoblotting. Expression level of mRNAs was determined by TaqMan assays. RESULTS: Delphinidin inhibited IL-1ß-induced expression of COX-2 and production of PGE2 in human chondrocytes. Delphinidin also inhibited IL-1ß-mediated phosphorylation of IL-1 receptor-associated kinase-1(Ser376), phosphorylation of IKKα/ß, expression of IKKß, degradation of IκBα, and activation and nuclear translocation of NF-κB/p65. Phosphorylation of TGF-ß-activated kinase 1 was not observed but NF-κB-inducing kinase (NIK) was phosphorylated and phosphorylation of NIK was blocked by delphinidin in IL-1ß-treated human chondrocytes. CONCLUSION: These data identify delphinidin as a novel inhibitor of IL-1ß-induced production of cartilage-degrading molecule PGE2 via inhibition of COX-2 expression and provide new insight into the mechanism of its action. Our results also identify inhibition of IRAK1(Ser376) phosphorylation by delphinidin in IL-1ß-induced activation of NF-κB in human chondrocytes. Given the important role played by IL-1ß-induced NF-κB activation, COX-2 expression and PGE2 production in OA, our results may have important implications for the development of novel therapeutic strategies for the prevention/treatment of OA.


Subject(s)
Anthocyanins/pharmacology , Cartilage, Articular/drug effects , Chondrocytes/drug effects , Interleukin-1 Receptor-Associated Kinases/metabolism , Interleukin-1beta/pharmacology , NF-kappa B/metabolism , Cartilage, Articular/cytology , Cartilage, Articular/metabolism , Chondrocytes/cytology , Chondrocytes/metabolism , Cyclooxygenase 2/metabolism , Dinoprostone/metabolism , Humans , Nitriles/pharmacology , Phosphorylation/drug effects , Receptors, Interleukin-1/metabolism , Signal Transduction/drug effects , Signal Transduction/physiology , Sulfones/pharmacology , Tumor Necrosis Factor-alpha/pharmacology
20.
J Cell Sci ; 126(Pt 1): 234-43, 2013 Jan 01.
Article in English | MEDLINE | ID: mdl-23203803

ABSTRACT

The evolutionarily conserved transcriptional cofactor Jab1 plays critical roles in cell differentiation, proliferation, and apoptosis by modulating the activity of diverse factors and regulating the output of various signaling pathways. Although Jab1 can interact with the bone morphogenetic protein (BMP) downstream effector Smad5 to repress BMP signaling in vitro, the role of Jab1 in BMP-mediated skeletogenesis in vivo is still poorly understood. As a key regulator of skeletogenesis, BMP signaling regulates the critical Ihh-Pthrp feedback loop to promote chondrocyte hypertrophy. In this study, we utilized the loxP/Cre system to delineate the specific role of Jab1 in cartilage formation. Strikingly, Jab1 chondrocyte-specific knockout Jab1(flox/flox); Col2a1-Cre (cKO) mutants exhibited neonatal lethal chondrodysplasia with severe dwarfism. In the mutant embryos, all the skeletal elements developed via endochondral ossification were extremely small with severely disorganized chondrocyte columns. Jab1 cKO chondrocytes exhibited increased apoptosis, G2 phase cell cycle arrest, and increased expression of hypertrophic chondrocyte markers Col10a1 and Runx2. Jab1 can also inhibit the transcriptional activity of Runx2, a key regulator of chondrocyte hypertrophy. Notably, our study reveals that Jab1 is likely a novel inhibitor of BMP signaling in chondrocytes in vivo. In Jab1 cKO chondrocytes, there was heightened expression of BMP signaling components including Gdf10/Bmp3b and of BMP targets during chondrocyte hypertrophy such as Ihh. Furthermore, Jab1 cKO chondrocytes exhibited an enhanced response to exogenous BMP treatment. Together, our study demonstrates that Jab1 represses chondrocyte hypertrophy in vivo, likely in part by downregulating BMP signaling and Runx2 activity.


Subject(s)
Chondrocytes/cytology , Chondrocytes/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Peptide Hydrolases/metabolism , Animals , Blotting, Western , COP9 Signalosome Complex , Cell Cycle/drug effects , Cell Cycle/genetics , Cell Differentiation/drug effects , Cell Differentiation/genetics , Chondrogenesis/drug effects , Chondrogenesis/genetics , Embryo, Mammalian/drug effects , Embryo, Mammalian/metabolism , Female , Immunohistochemistry , In Situ Nick-End Labeling , Intracellular Signaling Peptides and Proteins/genetics , Male , Mice , Mice, Mutant Strains , Peptide Hydrolases/genetics , Propidium/pharmacology , Reverse Transcriptase Polymerase Chain Reaction
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