Characteristics of optical properties of DOM and nutrients in rainwater of different ecological areas of a large reservoir in China.

Numerous studies have focused on the spectral characteristics and seasonal variations of dissolved organic matter (DOM) in rainwater. However, the relationship between the optical indices of DOM and nutrients in rainwater from different ecological areas of large reservoirs is poorly understood. A one-year monitoring study was conducted between March 2019 and February 2020 in the Danjiangkou Reservoir in Henan Province, China, to compare the composition, spectral characteristic parameters, and relationship between the optical indices of DOM and nutrients in rainwater under different ecological environments. The study showed that the average value of a300 in all samples was 5.29 ± 2.16 m-1 and showed a seasonal trend of higher in spring and winter and lower in summer and autumn as well as a regional difference of agricultural area > urban area > reservoir area. A three-dimensional fluorescence with parallel factor analysis (EEM-PARAFAC) revealed four components of the rainwater: C1 and C2 as UV humic-like substances, and C3 and C4 as protein-like substances. The protein-like components of rainwater from agricultural areas had a high fluorescence intensity, whereas the UV humic-like components of rainfall from urban and reservoir areas had a high fluorescence intensity. Analysis of the fluorescence indices showed that rainwater DOM humification was low and had a strong endogenous character in the Danjiangkou Reservoir. The redundancy analysis revealed that NO3--N, DTN, and SO42- mainly influenced the DOM optical indices of rainwater in urban areas, EC, DTN, and DOC had the highest interpretation of the DOM optical indices of rainwater in agricultural areas, and SO42-, DOC, and DTN had the highest interpretation of the DOM optical indices of rainwater in the reservoir. Overall, understanding the characteristics of rainfall DOM fluorescence and the relationships with nutrients in different ecological regions provides important information for comprehending biogeochemical processes in reservoirs.

Molecular mechanisms of exercise contributing to tissue regeneration.

Physical activity has been known as an essential element to promote human health for centuries. Thus, exercise intervention is encouraged to battle against sedentary lifestyle. Recent rapid advances in molecular biotechnology have demonstrated that both endurance and resistance exercise training, two traditional types of exercise, trigger a series of physiological responses, unraveling the mechanisms of exercise regulating on the human body. Therefore, exercise has been expected as a candidate approach of alleviating a wide range of diseases, such as metabolic diseases, neurodegenerative disorders, tumors, and cardiovascular diseases. In particular, the capacity of exercise to promote tissue regeneration has attracted the attention of many researchers in recent decades. Since most adult human organs have a weak regenerative capacity, it is currently a key challenge in regenerative medicine to improve the efficiency of tissue regeneration. As research progresses, exercise-induced tissue regeneration seems to provide a novel approach for fighting against injury or senescence, establishing strong theoretical basis for more and more "exercise mimetics." These drugs are acting as the pharmaceutical alternatives of those individuals who cannot experience the benefits of exercise. Here, we comprehensively provide a description of the benefits of exercise on tissue regeneration in diverse organs, mainly focusing on musculoskeletal system, cardiovascular system, and nervous system. We also discuss the underlying molecular mechanisms associated with the regenerative effects of exercise and emerging therapeutic exercise mimetics for regeneration, as well as the associated opportunities and challenges. We aim to describe an integrated perspective on the current advances of distinct physiological mechanisms associated with exercise-induced tissue regeneration on various organs and facilitate the development of drugs that mimics the benefits of exercise.

Interspecific competition between Microcystis aeruginosa and Chlamydomonas microsphaera stressed by tetracyclines.

The extensive use of tetracyclines in human and veterinary medicine causes contamination in the environment that could contribute to the spread of antibiotic-resistant bacteria or competition between species of phytoplankton. In this study, Microcystis aeruginosa (a bloom-forming cyanobacterium) and Chlamydomonas microsphaera (common green alga) were selected to test the effects of different concentrations of tetracyclines (tetracycline and oxytetracycline) in monoculture and co-culture. The results showed that compared with monoculture, the cell growth of C. microsphaera decreased significantly in co-culture treated with different concentrations of tetracycline and oxytetracycline. The ratios of inhibition of M. aeruginosa exposed to 0.1, 2, and 10 mg L-1 of tetracycline varied between 17.7 and 31.37% in co-culture compared with monoculture, while the cell growth of M. aeruginosa was enhanced by treatment with 0.1, 2, and 7.25 mg L-1 of oxytetracycline in co-culture. However, the cell growth of C. microsphaera was significantly inhibited by all the treatments in co-culture. With the treatment of tetracycline, the specific growth rate of M. aeruginosa was 0.36 to 0.31 day-1 in monoculture and co-culture, while that of C. microsphaera ranged from 0.38 to 0.26 day-1 in monoculture, and it decreased from 0.25 day-1 (0 mg L-1) to 0.08 day-1 (10 mg L-1) in co-culture. With the treatment of oxytetracycline, the specific growth rate of M. aeruginosa was stimulated in co-culture, while that of C. microsphaera was significantly inhibited in co-culture compared with monoculture. Therefore, although M. aeruginosa significantly inhibited C. microsphaera in co-culture with the tetracycline-free treatment, the competitive advantage of M. aeruginosa expanded following the addition of low or high concentrations of tetracyclines.

The complete mitogenome of Chrysopogon zizanioides (L.) Roberty (Poaceae), with its phylogenetic analysis.

Vetiver grass (Chrysopogon zizanioides), is a perennial and tussock C4 grass from the genus Chrysopogon of Poaceae, which has been widely used as a natural and inexpensive resource for multifarious environmental applications. The complete mitogenome of C. zizanioides was 551,622 bp in length, containing 40 protein-coding genes (PCGs), 19 transfer RNA genes (tRNAs), and six ribosomal RNA genes (rRNAs). All PCGs started with ATG and stopped with TNN (TAA, TAG, and TGA). The overall nucleotide composition is: 28.2% A, 28.2% T, 21.7% G, and 21.9% C, with a biased A + T content of 56.4%. Phylogenetic analysis using 14 PCGs of 22 species showed that C. zizanioides display a close relationship with Saccharum officinarum (LC107874) and Sorghum bicolor (DQ984518) in Poaceae.

Resequencing of 683 common bean genotypes identifies yield component trait associations across a north-south cline.

We conducted a large-scale genome-wide association study evaluation of 683 common bean accessions, including landraces and breeding lines, grown over 3 years and in four environments across China, ranging in latitude from 18.23° to 45.75° N, with different planting dates and abiotic or biotic stresses. A total of 505 loci were associated with yield components, of which seed size, flowering time and harvest maturity traits were stable across years and environments. Some loci aligned with candidate genes controlling these traits. Yield components were observed to have strong associations with a gene-rich region on the long arm of chromosome 1. Manipulation of seed size, through selection of seed length versus seed width and height, was deemed possible, providing a genome-based means to select for important yield components. This study shows that evaluation of large germplasm collections across north-south geographic clines is useful in the detection of marker associations that determine grain yield in pulses.

Fate and toxicity of silver nanoparticles in freshwater from laboratory to realistic environments: a review.

The fate and risk assessment of silver nanoparticles (Ag NPs) is an important environmental health issue. The toxic effects, mechanisms, and modes of action of Ag NPs on aquatic organisms have been extensively determined in the laboratory. However, knowledge gaps and discrepancies exist between laboratory studies and realistic environmental research; such inconsistencies hinder the development of health and safety regulations. To bridge these gaps, this review summarizes how environmental conditions and the physicochemical properties of Ag NPs affect the inconsistent findings between laboratory studies and realistic environmental research. Moreover, this paper systematically reviews different toxic effects of Ag NPs in a realistic environment and compares these effects with those in the laboratory, which is helpful for assessing the environmental fate and risk of Ag NPs. The hazardous effects of Ag NPs on the whole aquatic ecosystem with low concentrations (µg L-1) and long-term periods (months to years) are detailed. Furthermore, two perspectives of future toxicity studies of Ag NPs in realistic freshwater environments are emphasized.

[Metabolic engineering of (E)-ß-farnesene synthase genes for aphid-resistant genetically modified plants].

Aphids are major agricultural pests that cause significant yield losses of crops each year. (E)-ß-farnesene (EßF), as the main component of the aphid alarm pheromones, can interrupt aphid feeding and cause other conspecies in the vicinity to become agitated or disperse from their host plant. Furthermore, EßF can function as a kairomone in attracting aphid predators. EßF synthase genes, which encode enzymes that convert farnesyl diphosphate (FPP) to the acyclic sesquiterpene EßF, have been isolated and characterized from peppermint (Mentha × piperita and Mentha asiatica), Yuzu (Citrus junos), Douglas fir (Pseudotsuga menziesii), sweet wormwood (Artemisia annua) and chamomile (Matricaria recutita), respectively. Transgenic plant overexpressing EßF synthase genes has been one of the most efficient strategies for aphid management. In this review, the current statuses of transgenic plants engineered for aphid resistance were summarized. The plant-derived EßF synthase genes with their potential roles in aphid management via genetic-modified (GM) approaches were reviewed. The existing problem in GM plants with EßF synthase gene, such as low EßF emission was usually detected in the transgenic plant, was discussed and the development direction in this area was proposed.

Genome-Wide Investigation of WRKY Transcription Factors Involved in Terminal Drought Stress Response in Common Bean.

WRKY transcription factor plays a key role in drought stress. However, the characteristics of the WRKY gene family in the common bean (Phaseolus vulgaris L.) are unknown. In this study, we identified 88 complete WRKY proteins from the draft genome sequence of the "G19833" common bean. The predicted genes were non-randomly distributed in all chromosomes. Basic information, amino acid motifs, phylogenetic tree and the expression patterns of PvWRKY genes were analyzed, and the proteins were classified into groups 1, 2, and 3. Group 2 was further divided into five subgroups: 2a, 2b, 2c, 2d, and 2e. Finally, we detected 19 WRKY genes that were responsive to drought stress using qRT-PCR; 11 were down-regulated, and 8 were up-regulated under drought stress. This study comprehensively examines WRKY proteins in the common bean, a model food legume, and it provides a foundation for the functional characterization of the WRKY family and opportunities for understanding the mechanisms of drought stress tolerance in this plant.

A novel PCR-based method for high throughput prokaryotic expression of antimicrobial peptide genes.

BACKGROUND: To facilitate the screening of large quantities of new antimicrobial peptides (AMPs), we describe a cost-effective method for high throughput prokaryotic expression of AMPs. EDDIE, an autoproteolytic mutant of the N-terminal autoprotease, Npro, from classical swine fever virus, was selected as a fusion protein partner. The expression system was used for high-level expression of six antimicrobial peptides with different sizes: Bombinin-like peptide 7, Temporin G, hexapeptide, Combi-1, human Histatin 9, and human Histatin 6. These expressed AMPs were purified and evaluated for antimicrobial activity. RESULTS: Two or four primers were used to synthesize each AMP gene in a single step PCR. Each synthetic gene was then cloned into the pET30a/His-EDDIE-GFP vector via an in vivo recombination strategy. Each AMP was then expressed as an Npro fusion protein in Escherichia coli. The expressed fusion proteins existed as inclusion bodies in the cytoplasm and the expression levels of the six AMPs reached up to 40% of the total cell protein content. On in vitro refolding, the fusion AMPs was released from the C-terminal end of the autoprotease by self-cleavage, leaving AMPs with an authentic N terminus. The released fusion partner was easily purified by Ni-NTA chromatography. All recombinant AMPs displayed expected antimicrobial activity against E. coli, Micrococcus luteus and S. cerevisia. CONCLUSIONS: The method described in this report allows the fast synthesis of genes that are optimized for over-expression in E. coli and for the production of sufficiently large amounts of peptides for functional and structural characterization. The Npro partner system, without the need for chemical or enzymatic removal of the fusion tag, is a low-cost, efficient way of producing AMPs for characterization. The cloning method, combined with bioinformatic analyses from genome and EST sequence data, will also be useful for screening new AMPs. Plasmid pET30a/His-EDDIE-GFP also provides green/white colony selection for high-throughput recombinant AMP cloning.

[Construction of a recombination plasmid labelled with green fluorescence and its application in Clonostachys rosea].

OBJECTIVE: We constructed a recombinant eukaryotic expression vector harboring green fluorescent protein (GFP) and the hygromycin resistance gene hph, and observed its expression in Clonostachys rosea. METHODS: We used PCR, enzyme digestion, phosphorylation, ligation and transformation to construct the plasmid. Using protoplast preparation and transformation technologies, we expressed the plasmid in the fungi C. rosea. RESULTS: We created the eukaryotic expression vector, transformed it into C. rosea and observed green fluorescence with fluorescence microscope. CONCLUSION: The successful construction of the pANGH3 recombinant plasmid and its expression in C. rosea establishes a new model for studying fungal infection mechanisms.

Cloning and genetic diversity analysis of a new P5CS gene from common bean (Phaseolus vulgaris L.).

Delta(1)-pyrroline-5-carboxylate synthetase (P5CS) is the rate-limiting enzyme involved in the biosynthesis of proline in plants. By the 3' rapid amplification of cDNA ends (3'-RACE) approach, a 2,246-bp cDNA sequence was obtained from common bean (Phaseolus vulgaris L.), denominated PvP5CS2 differing from another P5CS gene that we cloned previously from common bean (PvP5CS). The predicted amino acid sequence of PvP5CS2 has an overall 93.2% identity GmP5CS (Glycine max L. P5CS). However, PvP5CS2 shows only 83.7% identity in amino acid sequence to PvP5CS, suggesting PvP5CS2 represents a homolog of the soybean P5CS gene. Abundant indel (insertion and deletion events) and SNP (single nucleotide polymorphisms) were found in the cloned PvP5CS2 genome sequence when comparing 24 cultivated and 3 wild common bean accessions and these in turn reflected aspects of common bean evolution. Sequence alignment showed that genotypes from the same gene pool had similar nucleotide variation, while genotypes from different gene pools had distinctly different nucleotide variation for PvP5CS2. Furthermore, diversity along the gene sequence was not evenly distributed, being low in the glutamic-g-semialdehyde dehydrogenase catalyzing region, moderate in the Glu-5-kinase catalyzing region and high in the intervening region. Neutrality tests showed that PvP5CS2 was a conserved gene undergoing negative selection. A new marker (Pv97) was developed for genetic mapping of PvP5CS2 based on an indel between DOR364 and G19833 sequences and the gene was located between markers Bng126 and BMd045 on chromosome b01. The relationship of PvP5CS2 and a previously cloned pyrroline-5-carboxylate synthetase gene as well as the implications of this work on selecting for drought tolerance in common bean are discussed.

Cloning the PvP5CS gene from common bean (Phaseolus vulgaris) and its expression patterns under abiotic stresses.

A full-length cDNA denominated PvP5CS for Delta(1)-pyrroline-5-carboxylate synthetase (P5CS), an enzyme involved in the biosynthesis of proline, was cloned from common bean using a candidate gene approach. PvP5CS contains an open reading frame encoding a 716 amino acid polypeptide. Sequence analysis showed that PvP5CS shares 95.1% homology in nucleotide sequence and 93.2% identity in amino acid sequence with the mothbean (Vigna aconitifolia) P5CS. The expression patterns of PvP5CS in common bean treated with drought, cold (4 degrees C), and salt (200 mM NaCl) stresses were examined using real-time quantitative PCR. These abiotic stresses caused significant up-regulation of the expression of PvP5CS in leaves. The PvP5CS mRNA transcript increased to 2.5 times the control level after 4d drought stress. A rapid up-regulation of PvP5CS, to about 16.3 times the control at 2h post-treatment was observed under salt stress. A significant increase in PvP5CS expression (11.7-fold) was detected after 2h of cold stress. The peaks of proline accumulation appeared at 8d for drought, 24h for cold and 9h for salt stress, somewhat later than the peaks of PvP5CS expression. These results suggest that PvP5CS was a stress-inducible gene regulating the accumulation of proline in plants subjected to stress. Finally, subcellular localization assays showed that the PvP5CS protein was present in the nucleus and at the plasmalemma.