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2.
Pediatr Crit Care Med ; 20(11): 1021-1026, 2019 11.
Article in English | MEDLINE | ID: mdl-31261230

ABSTRACT

OBJECTIVES: Critical illnesses caused by undiagnosed genetic conditions are challenging in PICUs. Whole-exome sequencing is a powerful diagnostic tool but usually costly and often fail to arrive at a final diagnosis in a short period. We assessed the feasibility of our whole-exome sequencing as a tool to improve the efficacy of rare diseases diagnosis for pediatric patients with severe illness. DESIGN: Observational analysis. METHOD: We employed a fast but standard whole-exome sequencing platform together with text mining-assisted variant prioritization in PICU setting over a 1-year period. SETTING: A tertiary referral Children's Hospital in Taiwan. PATIENTS: Critically ill PICU patients suspected of having a genetic disease and newborns who were suspected of having a serious genetic disease after newborn screening were enrolled. INTERVENTIONS: None. MEASUREMENTS AND MAIN RESULTS: Around 50,000 to 100,000 variants were obtained for each of the 40 patients in 5 days after blood sampling. Eleven patients were immediately found be affected by previously reported mutations after searching mutation databases. Another seven patients had a diagnosis among the top five in a list ranked by text mining. As a whole, 21 patients (52.5%) obtained a diagnosis in 6.2 ± 1.1 working days (range, 4.3-9 d). Most of the diagnoses were first recognized in Taiwan. Specific medications were recommended for 10 patients (10/21, 47.6%), transplantation was advised for five, and hospice care was suggested for two patients. Overall, clinical management was altered in time for 81.0% of patients who had a molecular diagnosis. CONCLUSIONS: The current whole-exome sequencing algorithm, balanced in cost and speed, uncovers genetic conditions in infants and children in PICU, which helps their managements in time and promotes better utilization of PICU resources.


Subject(s)
Exome Sequencing/methods , Genetic Diseases, Inborn/diagnosis , Child , Child, Preschool , Clinical Decision-Making , Critical Illness/therapy , Humans , Infant , Infant, Newborn , Intensive Care Units, Pediatric/statistics & numerical data , Exome Sequencing/statistics & numerical data
4.
Chem Biol Interact ; 181(3): 309-15, 2009 Oct 30.
Article in English | MEDLINE | ID: mdl-19682441

ABSTRACT

Osthole is an agent isolated from Cnidium monnieri (L.) Cusson and Angelica pubescens and has been used to treat several diseases, including metabolic syndromes. To investigate the hypoglycemic effects of osthole in diabetic db/db mice and the underlying mechanisms of these effects by in vitro assay, diabetic db/db mice and cell experiments were utilized to understand its possible effects. Osthole significantly activated both PPARalpha and PPARgamma in a dose-dependent manner based on the results of the transition transfection assay. The activation of PPARalpha and PPARgamma by osthole also resulted in an increase in the expression of PPAR target genes such as PPAR itself, adipose fatty acid-binding protein 2, acyl-CoA synthetases, and carnitine palmitoyltransferase-1A. In vitro results suggested that osthole might be a dual PPARalpha/gamma activator, but its chemical structure differed from that of the thiazolidinedione class of antidiabetic drugs. In addition, osthole markedly activated the AMP-activated protein kinase and its downstream acetyl CoA carboxylase molecules by increasing their phosphorylation levels. Finally, obese diabetic db/db mice were treated with osthole by different administered routes, and osthole was found to markedly reduce blood glucose level. Interestingly, osthole did not reduce the blood insulin or lipid levels, two phenomena that did occur in animals treated with insulin sensitizers like PPAR agonists. These results suggest that osthole can alleviate hyperglycemia and could be potentially developed into a novel drug for treatment of diabetes mellitus.


Subject(s)
Coumarins/therapeutic use , Hyperglycemia/drug therapy , Hypoglycemic Agents/therapeutic use , 3T3-L1 Cells , Acetyl-CoA Carboxylase/metabolism , Adenylate Kinase/metabolism , Adipocytes/cytology , Adipocytes/drug effects , Animals , Base Sequence , Cell Differentiation/drug effects , Coumarins/pharmacology , DNA Primers , Dose-Response Relationship, Drug , Hypoglycemic Agents/pharmacology , Mice , Mice, Inbred C57BL , PPAR alpha/agonists , PPAR gamma/agonists , Phosphorylation , Reverse Transcriptase Polymerase Chain Reaction
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