Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 26
Filter
Add more filters










Publication year range
1.
Molecules ; 29(3)2024 Jan 25.
Article in English | MEDLINE | ID: mdl-38338333

ABSTRACT

Bacterial infections pose a significant risk to human health. Magnolol, derived from Magnolia officinalis, exhibits potent antibacterial properties. Synthetic biology offers a promising approach to manufacture such natural compounds. However, the plant-based biosynthesis of magnolol remains obscure, and the lack of identification of critical genes hampers its synthetic production. In this study, we have proposed a one-step conversion of magnolol from chavicol using laccase. After leveraging 20 transcriptomes from diverse parts of M. officinalis, transcripts were assembled, enriching genome annotation. Upon integrating this dataset with current genomic information, we could identify 30 laccase enzymes. From two potential gene clusters associated with magnolol production, highly expressed genes were subjected to functional analysis. In vitro experiments confirmed MoLAC14 as a pivotal enzyme in magnolol synthesis. Improvements in the thermal stability of MoLAC14 were achieved through selective mutations, where E345P, G377P, H347F, E346C, and E346F notably enhanced stability. By conducting alanine scanning, the essential residues in MoLAC14 were identified, and the L532A mutation further boosted magnolol production to an unprecedented level of 148.83 mg/L. Our findings not only elucidated the key enzymes for chavicol to magnolol conversion, but also laid the groundwork for synthetic biology-driven magnolol production, thereby providing valuable insights into M. officinalis biology and comparative plant science.


Subject(s)
Allyl Compounds , Lignans , Magnolia , Phenols , Humans , Magnolia/genetics , Magnolia/chemistry , Laccase , Lignans/chemistry , Biphenyl Compounds/chemistry
2.
Molecules ; 29(3)2024 Jan 30.
Article in English | MEDLINE | ID: mdl-38338387

ABSTRACT

Trilobatin (TBL) is a key sweet compound from the traditional Chinese sweet tea plant (Rubus suavissimus S. Lee). Because of its intense sweetness, superior taste profile, and minimal caloric value, it serves as an exemplary natural dihydrochalcone sweetener. It also has various health benefits, including anti-inflammatory and glucose-lowering effects. It is primarily produced through botanical extraction, which impedes its scalability and cost-effectiveness. In a novel biotechnological approach, phloretin is used as a precursor that is transformed into TBL by the glycosyltransferase enzyme ph-4'-OGT. However, this enzyme's low catalytic efficiency and by-product formation limit the large-scale synthesis of TBL. In our study, the enzyme Mdph-4'-OGT was used to screen 17 sequences across species for TBL synthesis, of which seven exhibited catalytic activity. Notably, PT577 exhibited an unparalleled 97.3% conversion yield within 3 h. We then optimized the reaction conditions of PT577, attaining a peak TBL bioproduction of 163.3 mg/L. By employing virtual screening, we identified 25 mutation sites for PT577, thereby creating mutant strains that reduced by-products by up to 50%. This research enhances the enzymatic precision for TBL biosynthesis and offers a robust foundation for its industrial-scale production, with broader implications for the engineering and in silico analysis of glycosyltransferases.


Subject(s)
Flavonoids , Glycosyltransferases , Polyphenols , Glycosyltransferases/genetics , Antioxidants , Sweetening Agents
3.
Article in English | MEDLINE | ID: mdl-38237126

ABSTRACT

Introduction: Olivetolic acid (OLA) is a key intermediate in cannabidiol (CBD) synthesis, and cannabinoids are important neuroactive drugs. However, the catalytic activity of olivetolic acid synthase (OLS), the key enzyme involved in OLA biosynthesis, remains low and its catalytic mechanism is unclear. Materials and Methods: In this study, we conducted a scrupulous screening of the pivotal rate-limiting enzyme and analyzed its amino acid sites that are critical to enzyme activity as validated by experiments. Results: Through stringent enzyme screening, we pinpointed a highly active OLS sequence, OLS4. Then, we narrowed down three critical amino acid sites (I258, D198, E196) that significantly influence the OLS activity. Conclusions: Our findings laid the groundwork for the efficient biosynthesis of OLA, and thereby facilitate the biosynthesis of CBD.

4.
Antimicrob Agents Chemother ; 68(1): e0094823, 2024 Jan 10.
Article in English | MEDLINE | ID: mdl-38051047

ABSTRACT

Candida albicans is responsible for conditions ranging from superficial infections such as oral or vaginal candidiasis to potentially fatal systemic infections. It produces pathogenic factors contributing to its virulence. Iturin A, a lipopeptide derived from Bacillus sp., exhibits a significant inhibitory effect against C. albicans. However, its exact mechanism in mitigating the pathogenic factors of C. albicans remains to be elucidated. This study aimed to explore the influence of iturin A on several pathogenic attributes of C. albicans, including hypha formation, cell membrane permeability, cell adhesion, biofilm formation, and therapeutic efficacy in an oral C. albicans infection model in mice. The minimal inhibitory concentration of iturin A against C. albicans was determined to be 25 µg/mL in both YEPD and RPMI-1640 media. Iturin A effectively inhibited C. albicans hyphal formation, decreased cell viability within biofilms, enhanced cell membrane permeability, and disrupted cell adhesion in vitro. Nonetheless, iturin A did not significantly affect the phospholipase activity or hydrophobicity of C. albicans. A comparative study with nystatin demonstrated the superior therapeutic efficacy of iturin A in a mouse model of oral C. albicans infection, significantly decreasing C. albicans count and inhibiting both fungal hypha formation and tongue surface adhesion. High-dose iturin A treatment (25 µg/mL) in mice had no significant effects on blood indices, tongue condition, or body weight, indicating the potential for iturin A in managing oral infections. This study confirmed the therapeutic potential of iturin A and provided valuable insights for developing effective antifungal therapies targeting C. albicans pathogenic factors.


Subject(s)
Candida albicans , Candidiasis , Female , Mice , Animals , Antifungal Agents/pharmacology , Antifungal Agents/therapeutic use , Virulence Factors , Candidiasis/drug therapy , Biofilms
5.
Postgrad Med J ; 99(1178): 1280-1286, 2023 Nov 20.
Article in English | MEDLINE | ID: mdl-37794600

ABSTRACT

BACKGROUND: Controlled low central venous pressure (CLCVP) technique has been extensively validated in clinical practices to decrease intraoperative bleeding during liver resection process; however, no studies to date have attempted to propose a scoring method to better understand what risk factors might still be responsible for bleeding when CLCVP technique was implemented. METHODS: We aimed to use machine learning to develop a model for detecting the risk factors of major bleeding in patients who underwent liver resection using CLCVP technique. We reviewed the medical records of 1077 patients who underwent liver surgery between January 2017 and June 2020. We evaluated the XGBoost model and logistic regression model using stratified K-fold cross-validation (K = 5), and the area under the receiver operating characteristic curve, the recall rate, precision rate, and accuracy score were calculated and compared. The SHapley Additive exPlanations was employed to identify the most influencing factors and their contribution to the prediction. RESULTS: The XGBoost classifier with an accuracy of 0.80 and precision of 0.89 outperformed the logistic regression model with an accuracy of 0.76 and precision of 0.79. According to the SHapley Additive exPlanations summary plot, the top six variables ranked from most to least important included intraoperative hematocrit, surgery duration, intraoperative lactate, preoperative hemoglobin, preoperative aspartate transaminase, and Pringle maneuver duration. CONCLUSIONS: Anesthesiologists should be aware of the potential impact of increased Pringle maneuver duration and lactate levels on intraoperative major bleeding in patients undergoing liver resection with CLCVP technique.   What is already known on this topic-Low central venous pressure technique has already been extensively validated in clinical practices, with no prediction model for major bleeding. What this study adds-The XGBoost classifier outperformed logistic regression model for the prediction of major bleeding during liver resection with low central venous pressure technique. How this study might affect research, practice, or policy-anesthesiologists should be aware of the potential impact of increased PM duration and lactate levels on intraoperative major bleeding in patients undergoing liver resection with CLCVP technique.


Subject(s)
Hemorrhage , Lactic Acid , Humans , Central Venous Pressure , Risk Factors , Machine Learning , Liver
7.
Nat Commun ; 12(1): 6858, 2021 11 25.
Article in English | MEDLINE | ID: mdl-34824214

ABSTRACT

Muntjac deer have experienced drastic karyotype changes during their speciation, making it an ideal model for studying mechanisms and functional consequences of mammalian chromosome evolution. Here we generated chromosome-level genomes for Hydropotes inermis (2n = 70), Muntiacus reevesi (2n = 46), female and male M. crinifrons (2n = 8/9) and a contig-level genome for M. gongshanensis (2n = 8/9). These high-quality genomes combined with Hi-C data allowed us to reveal the evolution of 3D chromatin architectures during mammalian chromosome evolution. We find that the chromosome fusion events of muntjac species did not alter the A/B compartment structure and topologically associated domains near the fusion sites, but new chromatin interactions were gradually established across the fusion sites. The recently borne neo-Y chromosome of M. crinifrons, which underwent male-specific inversions, has dramatically restructured chromatin compartments, recapitulating the early evolution of canonical mammalian Y chromosomes. We also reveal that a complex structure containing unique centromeric satellite, truncated telomeric and palindrome repeats might have mediated muntjacs' recurrent chromosome fusions. These results provide insights into the recurrent chromosome tandem fusion in muntjacs, early evolution of mammalian sex chromosomes, and reveal how chromosome rearrangements can reshape the 3D chromatin regulatory conformations during species evolution.


Subject(s)
Chromosome Aberrations/veterinary , Chromosomes, Mammalian/genetics , Muntjacs/genetics , Animals , Chromatin/genetics , Chromosome Aberrations/statistics & numerical data , Contig Mapping , Deer/classification , Deer/genetics , Demography , Evolution, Molecular , Female , Genome/genetics , Male , Muntjacs/classification , Phylogeny , Sex Chromosomes/genetics , Synteny
8.
Nat Genet ; 53(5): 742-751, 2021 05.
Article in English | MEDLINE | ID: mdl-33875864

ABSTRACT

The evolutionary and genetic origins of the specialized body plan of flatfish are largely unclear. We analyzed the genomes of 11 flatfish species representing 9 of the 14 Pleuronectiforme families and conclude that Pleuronectoidei and Psettodoidei do not form a monophyletic group, suggesting independent origins from different percoid ancestors. Genomic and transcriptomic data indicate that genes related to WNT and retinoic acid pathways, hampered musculature and reduced lipids might have functioned in the evolution of the specialized body plan of Pleuronectoidei. Evolution of Psettodoidei involved similar but not identical genes. Our work provides valuable resources and insights for understanding the genetic origins of the unusual body plan of flatfishes.


Subject(s)
Flatfishes/anatomy & histology , Flatfishes/genetics , Phylogeny , Sequence Analysis, DNA , Amino Acid Sequence , Animal Fins/anatomy & histology , Animals , Biocatalysis , Evolution, Molecular , Gene Expression Regulation , Molecular Sequence Annotation , Mutation/genetics , Organ Size , Species Specificity
9.
Ann Transl Med ; 9(1): 38, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33553331

ABSTRACT

BACKGROUND: Sorafenib can prolong the survival of patients with advanced hepatocellular carcinoma (HCC). However, drug resistance remains the main obstacle to improving its efficiency. This study aimed to explore the likely molecular mechanism of sorafenib resistance. METHODS: Differentially expressed microRNAs (miRNAs) related to sorafenib response were analyzed with the Limma package in R software. The expression levels of miR-126-3p and sprouty-related EVH1 domain-containing protein 1 (SPRED1) in HCC cells were measured by quantitative reverse transcription polymerase chain reaction (qRT-PCR). Cell viability and proliferation were detected with Cell Counting Kit-8 (CCK-8), EdU proliferation, and clone formation assays. Transwell assays were performed to measure cell migration and invasion. TargetScan, MicroRNA Target Prediction Database (miRDB), and StarBase v2.0 were used to predict the targets of miR-126-3p. SPRED1 was confirmed as a target gene of miR-126-3p by dual-luciferase reporter assay and Western blotting. Finally, the in vivo anti-tumor effect of LV-miR-126-3p inhibitor combined with sorafenib was evaluated via subcutaneous tumor models. RESULTS: HCC cells with high expression of miR-126-3p exhibited increased resistance to sorafenib. The results of bioinformatics analysis and the dual-luciferase reporter assay showed that miR-126-3p directly targeted SPRED1. The sensitivity of HCC cells to sorafenib was markedly enhanced by SPRED1 upregulation. Gain- and loss-of function experiments verified that miR-126-3p induced sorafenib resistance in HCC through downregulating SPRED1. Furthermore, the inhibition of miR-126-3p markedly increased the effectiveness of sorafenib against HCC in vivo. Mechanistically, our results suggested that miR-126-3p promoted sorafenib resistance via targeting SPRED1 and activating the ERK signaling pathway. CONCLUSIONS: Our study demonstrates that regulating the miR-126-3p/SPRED1 axis might be a promising strategy for enhancing the antitumor effect of sorafenib in the treatment of HCC.

10.
Sci China Life Sci ; 64(1): 1-21, 2021 01.
Article in English | MEDLINE | ID: mdl-33165812

ABSTRACT

The rumen is the hallmark organ of ruminants and hosts a diverse ecosystem of microorganisms that facilitates efficient digestion of plant fibers. We analyzed 897 transcriptomes from three Cetartiodactyla lineages: ruminants, camels and cetaceans, as well as data from ruminant comparative genomics and functional assays to explore the genetic basis of rumen functional innovations. We identified genes with relatively high expression in the rumen, of which many appeared to be recruited from other tissues. These genes show functional enrichment in ketone body metabolism, regulation of microbial community, and epithelium absorption, which are the most prominent biological processes involved in rumen innovations. Several modes of genetic change underlying rumen functional innovations were uncovered, including coding mutations, genes newly evolved, and changes of regulatory elements. We validated that the key ketogenesis rate-limiting gene (HMGCS2) with five ruminant-specific mutations was under positive selection and exhibits higher synthesis activity than those of other mammals. Two newly evolved genes (LYZ1 and DEFB1) are resistant to Gram-positive bacteria and thereby may regulate microbial community equilibrium. Furthermore, we confirmed that the changes of regulatory elements accounted for the majority of rumen gene recruitment. These results greatly improve our understanding of rumen evolution and organ evo-devo in general.


Subject(s)
Adaptation, Physiological/genetics , Camelus/genetics , Cetacea/genetics , Gene Expression Profiling/methods , Genomics/methods , Rumen/metabolism , Ruminants/genetics , Amino Acid Sequence , Animals , Camelus/classification , Camelus/microbiology , Cetacea/classification , Cetacea/microbiology , Cluster Analysis , Epithelium/metabolism , Epithelium/microbiology , Microbiota , Models, Genetic , Phylogeny , Rumen/microbiology , Ruminants/classification , Ruminants/microbiology , Sequence Homology, Amino Acid
11.
Sci Rep ; 10(1): 15882, 2020 09 28.
Article in English | MEDLINE | ID: mdl-32985577

ABSTRACT

Fireflies are among the most charismatic insects for their spectacular bioluminescence, but the origin and evolution of bioluminescence remain elusive. Especially, the genic basis of luciferin (D-luciferin) biosynthesis and light patterns is largely unknown. Here, we present the high-quality reference genomes of two fireflies Lamprigera yunnana (1053 Mb) and Abscondita terminalis (501 Mb) with great differences in both morphology and luminous behavior. We sequenced the transcriptomes and proteomes of luminous organs of two species. We created the CRISPR/Cas9-induced mutants of Abdominal B gene without luminous organs in the larvae of A. terminalis and sequenced the transcriptomes of mutants and wild-types. Combining gene expression analyses with comparative genomics, we propose a more complete luciferin synthesis pathway, and confirm the convergent evolution of bioluminescence in insects. Using experiments, the function of the firefly acyl-CoA thioesterase (ACOT1) to convert L-luciferin to D-luciferin was validated for the first time. Comparisons of three-dimension reconstruction of luminous organs and their differentially expressed genes among two species suggest that two positive genes in the calcium signaling pathway and structural difference of luminous organs may play an important role in the evolution of flash pattern. Altogether, our results provide important resources for further exploring bioluminescence in insects.


Subject(s)
Biological Evolution , Fireflies/genetics , Firefly Luciferin/metabolism , Animals , Fireflies/metabolism , Proteome , Species Specificity , Transcriptome
12.
Int J Food Microbiol ; 330: 108783, 2020 Oct 02.
Article in English | MEDLINE | ID: mdl-32659523

ABSTRACT

The contamination of Aspergillus carbonarius causes decreases and great decay of agricultural products, and threatens the human and animal health by producing mycotoxins, especially ochratoxin A. Bacillus subtilis has been proved to efficiently inhibit the growth of A. carbonarius. Revealing the major active compound and the mechanisms for the antifungal of B. subtilis are essential to enhance its antifungal activity and control the quality of antifungal products made of it. In this study, we determined that iturin A is the major compound that inhibits Aspergillus carbonarius, a widespread fungal pathogen of grape and other fruits. Iturin A significantly inhibited growth and ochratoxin A production of A. carbonarius with minimal inhibitory concentrations (MICs) of 10 µg/mL and 0.312 µg/mL, respectively. Morphological observations revealed that iturin A caused swelling of the fungal cells and thinning of the cell wall and membrane at 1/2 MIC, whereas it inhibited fungal spore germination and caused mitochondrial swelling at higher concentrations. A differential transcriptomic analysis indicated that the mechanisms used by iturin A to inhibit A. carbonarius were to downregulate the expression of genes related to cell membrane, transport, osmotic pressure, oxidation-reduction processes, and energy metabolism. Among the down-regulated genes, those related to the transport capacity were most significantly influenced, including the increase of energy-related transport pathways and decrease of other pathways. Notably, the genes related to taurine and hypotaurine metabolism were also decreased, indicating iturin A potentially cause the occurrence of osmotic imbalance in A. carbonarius, which may be the intrinsic cause for the swelling of fungal cells and mitochondria. Overall, iturin A produced by B. subtilis played important roles to inhibit A. carbonarius via changing the fungal cell structure and causing perturbations to energy, transport and osmotic pressure metabolisms in fungi. The results indicated a new direction for researches on the mechanisms for lipopeptides and provided useful information to develop more efficient antifungal agents, which are important to agriculture and biomedicine.


Subject(s)
Antifungal Agents/pharmacology , Aspergillus/drug effects , Aspergillus/metabolism , Bacillus subtilis/metabolism , Peptides, Cyclic/pharmacology , Antifungal Agents/metabolism , Aspergillus/genetics , Aspergillus/growth & development , Biological Transport/drug effects , Biological Transport/genetics , Energy Metabolism/drug effects , Energy Metabolism/genetics , Gene Expression Regulation, Fungal/drug effects , Microbial Sensitivity Tests , Mycotoxins/metabolism , Osmotic Pressure/drug effects , Peptides, Cyclic/metabolism , Spores, Fungal/drug effects , Spores, Fungal/growth & development , Spores, Fungal/metabolism , Transcriptome
13.
Sci China Life Sci ; 63(11): 1734-1743, 2020 Nov.
Article in English | MEDLINE | ID: mdl-32347474

ABSTRACT

Phloretin is an important skin-lightening and depigmenting agent from the peel of apples. Although de novo production of phloretin has been realized in microbes using the natural pathway from plants, the efficiency of phloretin production is still not enough for industrial application. Here, we established an artificial pathway in the yeast to produce phloretin via assembling two genes of p-coumaroyl-CoA ligase (4CL) and chalcone synthase (CHS). CHS is a key enzyme which conventionally condenses a CoA-tethered starter with three molecules of malonyl-CoA to form the backbone of flavonoids. However, there was 33% of by-product generated via CHS by condensing two molecules of malonyl-CoA during the fermentation process. Hence, we introduced a more efficient CHS and improved the supply of malonyl-CoA through two pathways; the by-product ratio was decreased from 33% to 17% and the production of phloretin was improved from 48 to 83.2 mg L-1. Finally, a fed-batch fermentation process was optimized and the production of phloretin reached 619.5 mg L-1, which was 14-fold higher than that of the previous studies. Our work established a platform for the biosynthesis of phloretin from the low-cost raw material 3-(4-hydroxyphenyl) propanoic acid and also illustrated the potential for industrial scale bio-manufacturing of phloretin.


Subject(s)
Acyltransferases/genetics , Phloretin/metabolism , Saccharomyces cerevisiae/genetics , Acyltransferases/metabolism , Bioreactors , Biosynthetic Pathways , Fermentation , Malonyl Coenzyme A/biosynthesis , Metabolic Engineering , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Saccharomyces cerevisiae/metabolism
14.
Front Neurosci ; 14: 615435, 2020.
Article in English | MEDLINE | ID: mdl-33519365

ABSTRACT

Medical image fusion, which aims to derive complementary information from multi-modality medical images, plays an important role in many clinical applications, such as medical diagnostics and treatment. We propose the LatLRR-FCNs, which is a hybrid medical image fusion framework consisting of the latent low-rank representation (LatLRR) and the fully convolutional networks (FCNs). Specifically, the LatLRR module is used to decompose the multi-modality medical images into low-rank and saliency components, which can provide fine-grained details and preserve energies, respectively. The FCN module aims to preserve both global and local information by generating the weighting maps for each modality image. The final weighting map is obtained using the weighted local energy and the weighted sum of the eight-neighborhood-based modified Laplacian method. The fused low-rank component is generated by combining the low-rank components of each modality image according to the guidance provided by the final weighting map within pyramid-based fusion. A simple sum strategy is used for the saliency components. The usefulness and efficiency of the proposed framework are thoroughly evaluated on four medical image fusion tasks, including computed tomography (CT) and magnetic resonance (MR), T1- and T2-weighted MR, positron emission tomography and MR, and single-photon emission CT and MR. The results demonstrate that by leveraging the LatLRR for image detail extraction and the FCNs for global and local information description, we can achieve performance superior to the state-of-the-art methods in terms of both objective assessment and visual quality in some cases. Furthermore, our method has a competitive performance in terms of computational costs compared to other baselines.

15.
Curr Biol ; 30(1): 108-114.e5, 2020 01 06.
Article in English | MEDLINE | ID: mdl-31839456

ABSTRACT

As the only endemic neotropical parrot to have recently lived in the northern hemisphere, the Carolina parakeet (Conuropsis carolinensis) was an iconic North American bird. The last surviving specimen died in the Cincinnati Zoo in 1918 [1]. The cause of its extinction remains contentious: besides excessive mortality associated to habitat destruction and active hunting, their survival could have been negatively affected by its range having become increasingly patchy [2] or by the exposure to poultry pathogens [3, 4]. In addition, the Carolina parakeet showed a predilection for cockleburs, an herbaceous plant that contains a powerful toxin, carboxyatractyloside, or CAT [5], which did not seem to affect them but made the birds notoriously toxic to most predators [3]. To explore the demographic history of this bird, we generated the complete genomic sequence of a preserved specimen held in a private collection in Espinelves (Girona, Spain), as well as of a close extant relative, Aratinga solstitialis. We identified two non-synonymous genetic changes in two highly conserved proteins known to interact with CAT that could underlie a specific dietary adaptation to this toxin. Our genomic analyses did not reveal evidence of a dramatic past demographic decline in the Carolina parakeet; also, its genome did not exhibit the long runs of homozygosity that are signals of recent inbreeding and are typically found in endangered species. As such, our results suggest its extinction was an abrupt process and thus likely solely attributable to human causes.


Subject(s)
Biological Evolution , Diet/veterinary , Extinction, Biological , Genome , Parrots/physiology , Animals , Parakeets/genetics , Parakeets/physiology , Parrots/genetics
16.
J Cancer ; 10(12): 2745-2753, 2019.
Article in English | MEDLINE | ID: mdl-31258782

ABSTRACT

Background: Sorafenib appears to increase the survival rate of hepatocellular carcinoma (HCC) patients, but its response rate is seriously limited due to drug resistance. Molecular mechanisms underlying sorafenib resistance are still unknown. Herein, we explored the possible role of miR-1226-3p in sorafenib resistance of HCC. Methods: The miR-1226-3p expression level in HCC cell lines was evaluated by qRT-PCR. Cell viabilities to sorafenib were measured by CCK-8 assay. Cell apoptosis and proliferation were detected by flow cytometry and EdU proliferation assay. A luciferase reporter of DUSP4 3'-UTR was used for validation as a target gene of miR-1226-3p. Finally, the effects of in vivo antitumor efficacy of miR-1226-3p combined with sorafenib were evaluated by HCC tumor xenografts in nude mice. Results: Bioinformatics analysis from Gene Expression Omnibus (GEO) datasets GSE56059 suggested that miR-1226-3p expression was downregulated in HCC patients who showed progressive disease (PD) after sorafenib treatment. SK-HEP-1 cells expressed lower levels of miR-1226-3p than HepG2 cells. We confirmed that SK-HEP-1 cells were more resistant to sorafenib compared to HepG2 cells. In addition, miR-1226-3p mimic increased cell apoptosis of SK-HEP-1 cells, whereas miR-1226-3p inhibitor significantly impaired cell apoptosis of HepG2 cells after sorafenib treatment. Moreover, we validated that miR-1226-3p directly targeted dual specificity phosphatase 4 (DUSP4), and further demonstrated that knockdown of DUSP4 reduced sorafenib resistance by regulating the JNK-Bcl-2 axis. Conclusions: miR-1226-3p promotes sorafenib sensitivity of HCC through downregulation of DUSP4 expression, and targeting miR-1226-3p may be a novel therapeutic strategy for overcoming sorafenib resistance.

17.
Science ; 364(6446)2019 06 21.
Article in English | MEDLINE | ID: mdl-31221829

ABSTRACT

The reindeer is an Arctic species that exhibits distinctive biological characteristics, for which the underlying genetic basis remains largely unknown. We compared the genomes of reindeer against those of other ruminants and nonruminant mammals to reveal the genetic basis of light arrhythmicity, high vitamin D metabolic efficiency, the antler growth trait of females, and docility. We validate that two reindeer vitamin D metabolic genes (CYP27B1 and POR) show signs of positive selection and exhibit higher catalytic activity than those of other ruminants. A mutation upstream of the reindeer CCND1 gene endows an extra functional binding motif of the androgen receptor and thereby may result in female antlers. Furthermore, a mutation (proline-1172→threonine) in reindeer PER2 results in loss of binding ability with CRY1, which may explain circadian arrhythmicity in reindeer.


Subject(s)
Adaptation, Biological , Antlers/growth & development , Circadian Rhythm/physiology , Reindeer/genetics , Reindeer/physiology , Amino Acid Motifs/genetics , Amino Acid Substitution , Animals , Arctic Regions , Binding Sites/genetics , Circadian Rhythm/genetics , Cyclin D1/genetics , Female , Period Circadian Proteins/genetics , Proline/genetics , Reindeer/metabolism , Threonine/genetics , Vitamin D/metabolism
18.
Science ; 364(6446)2019 06 21.
Article in English | MEDLINE | ID: mdl-31221830

ABSTRACT

Ruminants are the only extant mammalian group possessing bony (osseous) headgear. We obtained 221 transcriptomes from bovids and cervids and sequenced three genomes representing the only two pecoran lineages that convergently lack headgear. Comparative analyses reveal that bovid horns and cervid antlers share similar gene expression profiles and a common cellular basis developed from neural crest stem cells. The rapid regenerative properties of antler tissue involve exploitation of oncogenetic pathways, and at the same time some tumor suppressor genes are under strong selection in deer. These results provide insights into the evolutionary origin of ruminant headgear as well as mammalian organ regeneration and oncogenesis.


Subject(s)
Antlers/physiology , Regeneration/genetics , Ruminants/genetics , Ruminants/physiology , Animals , Antlers/metabolism , Biological Evolution , Carcinogenesis/genetics , Genes, Tumor Suppressor , Neoplasms/genetics , Neoplasms/veterinary , Organogenesis/genetics , Selection, Genetic , Transcriptome
19.
Front Psychiatry ; 10: 205, 2019.
Article in English | MEDLINE | ID: mdl-31031657

ABSTRACT

Aim: This paper proposes a novel alcoholism identification approach that can assist radiologists in patient diagnosis. Method: AlexNet was used as the basic transfer learning model. The global learning rate was small, at 10-4, and the iteration epoch number was at 10. The learning rate factor of replaced layers was 10 times larger than that of the transferred layers. We tested five different replacement configurations of transfer learning. Results: The experiment shows that the best performance was achieved by replacing the final fully connected layer. Our method yielded a sensitivity of 97.44%± 1.15%, a specificity of 97.41 ± 1.51%, a precision of 97.34 ± 1.49%, an accuracy of 97.42 ± 0.95%, and an F1 score of 97.37 ± 0.97% on the test set. Conclusion: This method can assist radiologists in their routine alcoholism screening of brain magnetic resonance images.

20.
HPB (Oxford) ; 21(7): 784-792, 2019 07.
Article in English | MEDLINE | ID: mdl-30878490

ABSTRACT

BACKGROUND: The objective of this meta-analysis was to evaluate the effectiveness and safety of lymph node dissection (LND) in patients with intrahepatic cholangiocarcinoma (ICC). METHODS: A literature search with a date range of January 2000 to January 2018 was performed to identify studies comparing lymph node dissection (LND+) with non-lymph node dissection (LND-) for patients with ICC. The LND + group was further divided into positive (LND + N+) and negative (LND + N-) lymph node status groups based on pathological analysis. RESULTS: 13 studies including 1377 patients were eligible. There were no significant differences in overall survival (OS) (HR 1.13, 95% CI 0.94-1.36; P = 0.20), disease-free survival (DFS) (HR 1.23, 95% CI 0.94-1.60; P = 0.13), or recurrence (OR 1.39, 95% CI 0.90-2.15; P = 0.14) between LND + group and LND-group. Postoperative morbidity was significantly higher in the LND + group (OR 2.67, 95% CI 1.74-4.10; P < 0.001). A subset analysis showed that OS was similar between LND + N- and LND-groups (HR 1.13, 95% CI 0.82-1.56; P = 0.450). However when comparing, OS of the LND-group to the LND+N+ group there was a significant increase in OS for the LND-group (HR 3.26, 95% CI 1.85-5.76; P < 0.001). CONCLUSIONS: LND does not seem to positively affect overall survival and is associated with increased post-operative morbidity.


Subject(s)
Bile Duct Neoplasms/surgery , Cholangiocarcinoma/surgery , Hepatectomy , Lymph Node Excision , Lymph Nodes/surgery , Bile Duct Neoplasms/mortality , Bile Duct Neoplasms/secondary , Cholangiocarcinoma/mortality , Cholangiocarcinoma/secondary , Disease Progression , Disease-Free Survival , Hepatectomy/adverse effects , Hepatectomy/mortality , Humans , Lymph Node Excision/adverse effects , Lymph Node Excision/mortality , Lymph Nodes/pathology , Lymphatic Metastasis , Risk Factors , Time Factors
SELECTION OF CITATIONS
SEARCH DETAIL
...