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1.
Article in English | MEDLINE | ID: mdl-39012753

ABSTRACT

Learning based single image super-resolution (SISR) for real-world images has been an active research topic yet a challenging task, due to the lack of paired low-resolution (LR) and high-resolution (HR) training images. Most of the existing unsupervised real-world SISR methods adopt a twostage training strategy by synthesizing realistic LR images from their HR counterparts first, then training the super-resolution (SR) models in a supervised manner. However, the training of image degradation and SR models in this strategy are separate, ignoring the inherent mutual dependency between downscaling and its inverse upscaling process. Additionally, the ill-posed nature of image degradation is not fully considered. In this paper, we propose an image downscaling and SR model dubbed as SDFlow, which simultaneously learns a bidirectional manyto- many mapping between real-world LR and HR images unsupervisedly. The main idea of SDFlow is to decouple image content and degradation information in the latent space, where content information distribution of LR and HR images is matched in a common latent space. Degradation information of the LR images and the high-frequency information of the HR images are fitted to an easy-to-sample conditional distribution. Experimental results on real-world image SR datasets indicate that SDFlow can generate diverse realistic LR and SR images both quantitatively and qualitatively.

2.
IEEE Trans Image Process ; 33: 3385-3398, 2024.
Article in English | MEDLINE | ID: mdl-38787670

ABSTRACT

JPEG compression adopts the quantization of Discrete Cosine Transform (DCT) coefficients for effective bit-rate reduction, whilst the quantization could lead to a significant loss of important image details. Recovering compressed JPEG images in the frequency domain has recently garnered increasing interest, complementing the multitude of restoration techniques established in the pixel domain. However, existing DCT domain methods typically suffer from limited effectiveness in handling a wide range of compression quality factors or fall short in recovering sparse quantized coefficients and the components across different colorspaces. To address these challenges, we propose a DCT domain spatial-frequential Transformer, namely DCTransformer, for JPEG quantized coefficient recovery. Specifically, a dual-branch architecture is designed to capture both spatial and frequential correlations within the collocated DCT coefficients. Moreover, we incorporate the operation of quantization matrix embedding, which effectively allows our single model to handle a wide range of quality factors, and a luminance-chrominance alignment head that produces a unified feature map to align different-sized luminance and chrominance components. Our proposed DCTransformer outperforms the current state-of-the-art JPEG artifact removal techniques, as demonstrated by our extensive experiments.

3.
Cogn Res Princ Implic ; 9(1): 17, 2024 03 26.
Article in English | MEDLINE | ID: mdl-38530617

ABSTRACT

Previous work has demonstrated similarities and differences between aerial and terrestrial image viewing. Aerial scene categorization, a pivotal visual processing task for gathering geoinformation, heavily depends on rotation-invariant information. Aerial image-centered research has revealed effects of low-level features on performance of various aerial image interpretation tasks. However, there are fewer studies of viewing behavior for aerial scene categorization and of higher-level factors that might influence that categorization. In this paper, experienced subjects' eye movements were recorded while they were asked to categorize aerial scenes. A typical viewing center bias was observed. Eye movement patterns varied among categories. We explored the relationship of nine image statistics to observers' eye movements. Results showed that if the images were less homogeneous, and/or if they contained fewer or no salient diagnostic objects, viewing behavior became more exploratory. Higher- and object-level image statistics were predictive at both the image and scene category levels. Scanpaths were generally organized and small differences in scanpath randomness could be roughly captured by critical object saliency. Participants tended to fixate on critical objects. Image statistics included in this study showed rotational invariance. The results supported our hypothesis that the availability of diagnostic objects strongly influences eye movements in this task. In addition, this study provides supporting evidence for Loschky et al.'s (Journal of Vision, 15(6), 11, 2015) speculation that aerial scenes are categorized on the basis of image parts and individual objects. The findings were discussed in relation to theories of scene perception and their implications for automation development.


Subject(s)
Eye Movements , Visual Perception , Humans , Photic Stimulation/methods , Automation , Records
4.
Elife ; 122024 Mar 27.
Article in English | MEDLINE | ID: mdl-38536720

ABSTRACT

Chemoresistance is a major cause of treatment failure in many cancers. However, the life cycle of cancer cells as they respond to and survive environmental and therapeutic stress is understudied. In this study, we utilized a microfluidic device to induce the development of doxorubicin-resistant (DOXR) cells from triple negative breast cancer (TNBC) cells within 11 days by generating gradients of DOX and medium. In vivo chemoresistant xenograft models, an unbiased genome-wide transcriptome analysis, and a patient data/tissue analysis all showed that chemoresistance arose from failed epigenetic control of the nuclear protein-1 (NUPR1)/histone deacetylase 11 (HDAC11) axis, and high NUPR1 expression correlated with poor clinical outcomes. These results suggest that the chip can rapidly induce resistant cells that increase tumor heterogeneity and chemoresistance, highlighting the need for further studies on the epigenetic control of the NUPR1/HDAC11 axis in TNBC.


Subject(s)
Triple Negative Breast Neoplasms , Humans , Triple Negative Breast Neoplasms/genetics , Drug Resistance, Neoplasm , Doxorubicin/pharmacology , Nuclear Proteins/metabolism , Lab-On-A-Chip Devices , Cell Line, Tumor , Gene Expression Regulation, Neoplastic
5.
Methods Mol Biol ; 2764: 35-42, 2024.
Article in English | MEDLINE | ID: mdl-38393587

ABSTRACT

Chimeric antigen receptor (CAR) T cell therapy shows a highly effective therapeutic effect on B-cell malignancies. The tumor microenvironment (TME) of solid tumors in vivo poses a great challenge to CAR T cell therapy due to its complexity. Recently, tumor spheroids have attracted much attention because of their ability to recapitulate TME. However, the use of tumor spheroids for the CAR T cytotoxicity assay involves the difficult task of separating unbound T cells and dead tumor cells from the spheroids. Therefore, we developed a three-dimensional hanging spheroid plate (3DHSP) that facilitates spheroid formation and separation of unbound and dead cells from spheroids during cytotoxicity assays. In this work, detailed steps have been described for fabrication and operation of the 3DHSP. This new 3DHSP device is a 96-well plate in which each well consists of a hanging dripper and a spheroid separation plate. A tumor spheroid forms in a droplet hanging in the dripper and is mixed with CAR T cells. The mixture in the droplet is deposited into the spheroid separation plate by pipetting, and unbound and dead CAR T and tumor cells are detached from the spheroid and moved to the waste well in the plate by tilting the 3DHSP at 20°. The size of the spheroid can be used as a readout for CAR T cell cytotoxicity assay, suggesting that the 3DHSP does not require cumbersome fluorescent staining.


Subject(s)
Neoplasms , Receptors, Chimeric Antigen , Humans , Spheroids, Cellular , T-Lymphocytes , Cell Line, Tumor , Tumor Microenvironment
6.
Materials (Basel) ; 17(2)2024 Jan 18.
Article in English | MEDLINE | ID: mdl-38255634

ABSTRACT

Sisal fiber exhibits a fibrous and porous structure with significant surface roughness, making it highly suitable for storing phase change materials (PCMs). Its intricate morphology further aids in mitigating the risk of PCM leakage. This research successfully employs vacuum adsorption to encapsulate paraffin within sisal fiber, yielding a potentially cost-effective, durable, and environmentally friendly phase change energy storage medium. A systematic investigation was carried out to evaluate the effects of sisal-to-paraffin mass ratio, fiber length, vacuum level, and negative pressure duration on the loading rate of paraffin. The experimental results demonstrate that a paraffin loading rate of 8 wt% can be achieved by subjecting a 3 mm sisal fiber to vacuum adsorption with 16 wt% paraffin for 1 h at -0.1 MPa. Through the utilization of nano-CT imaging enhancement technology, along with petrographic microscopy, this study elucidates the mechanism underlying paraffin storage within sisal fiber during vacuum adsorption. The observations reveal that a substantial portion of paraffin is primarily stored within the pores of the fiber, while a smaller quantity is firmly adsorbed onto its surface, thus yielding a durable phase change energy storage medium. The research findings contribute to both the theoretical foundations and the available practical guidance for the fabrication and implementation of paraffin/sisal fiber composite phase change energy storage mediums.

7.
Eur J Pharmacol ; 965: 176326, 2024 Feb 15.
Article in English | MEDLINE | ID: mdl-38220141

ABSTRACT

Osteoarthritis (OA) is a chronic degenerative joint disease characterized by cartilage degeneration and subchondral bone remodelling. Currently, conservative treatment strategies cannot effectively alleviate the progression of OA. In this study, we used computer network analysis to show that Nitisinone (NTBC) is closely related to extracellular matrix degradation in OA and mainly interferes with the TNF-α signaling pathway. NTBC is an orphan drug used to treat hereditary type I tyrosinemia by altering phenylalanine/tyrosine metabolic flow. In this study, we found that NTBC effectively reduced chondrocyte inflammation and extracellular matrix degradation induced by TNF-α. Mechanistically, NTBC inhibited the cGAS/STING signaling pathway and reduced activation of the STING-dependent NF-κB pathway to alleviate inflammation. In addition, NTBC inhibited osteoclastogenesis and delayed the occurrence of subchondral bone remodelling. In mice with ACLT-induced osteoarthritis, intra-articular injection of NTBC significantly reduced cartilage degradation and subchondral bone remodelling. NTBC showed impressive therapeutic efficacy as a potential pharmaceutical intervention for the treatment of OA.


Subject(s)
Cartilage, Articular , Cyclohexanones , Nitrobenzoates , Osteoarthritis , Mice , Animals , NF-kappa B/metabolism , Osteogenesis , Tumor Necrosis Factor-alpha/metabolism , Osteoarthritis/drug therapy , Osteoarthritis/metabolism , Inflammation/drug therapy , Chondrocytes
8.
IEEE Trans Image Process ; 33: 780-792, 2024.
Article in English | MEDLINE | ID: mdl-38198254

ABSTRACT

Learned video compression methods have gained various interests in the video coding community. Most existing algorithms focus on exploring short-range temporal information and developing strong motion compensation. Still, the ignorance of long-range temporal information utilization constrains the potential of compression. In this paper, we are dedicated to exploiting both long- and short-range temporal information to enhance video compression performance. Specifically, for long-range temporal information exploration, we propose a temporal prior that can be continuously supplemented and updated during compression within the group of pictures (GOP). With the updating scheme, the temporal prior can provide richer mutual information between the overall prior and the current frame for the entropy model, thus facilitating Gaussian parameter prediction. As for the short-range temporal information, we propose a progressive guided motion compensation to achieve robust and accurate compensation. In particular, we design a hierarchical structure to build multi-scale compensation, and by employing optical flow guidance, we generate pixel offsets as motion information at each scale. Additionally, the compensation results at each scale will guide the next scale's compensation, forming a flow-to-kernel and scale-by-scale stable guiding strategy. Extensive experimental results demonstrate that our method can obtain advanced rate-distortion performance compared to the state-of-the-art learned video compression approaches and the latest standard reference software in terms of PSNR and MS-SSIM. The codes are publicly available on: https://github.com/Huairui/LSTVC.

9.
Analyst ; 149(2): 475-481, 2024 Jan 15.
Article in English | MEDLINE | ID: mdl-38050728

ABSTRACT

Tumour spheroids are widely used in immune cell cytotoxicity assays and anticancer drug testing, providing a physiologically relevant model replicating the tumour microenvironment. However, co-culture of immune and tumour cells complicates quantification of immune cell killing efficiency. We present a novel 3D hanging spheroid-filter plate that efficiently facilitates spheroid formation and separates unbound/dead cells during cytotoxicity assays. Optical imaging directly measures the cytotoxic effects of anti-cancer drugs on tumour spheroids, eliminating the need for live/dead fluorescent staining. This approach enables cost-effective evaluation of T-cell cytotoxicity with specific chimeric antigen receptors (CARs), enhancing immune cell-based assays and drug testing in three-dimensional tumour models.


Subject(s)
Antineoplastic Agents , Spheroids, Cellular , Cell Line, Tumor , Coculture Techniques , Antineoplastic Agents/pharmacology , T-Lymphocytes
10.
FASEB J ; 37(12): e23303, 2023 12.
Article in English | MEDLINE | ID: mdl-37983963

ABSTRACT

Lumbar intervertebral disc degeneration(IDD) is a prevalent inflammatory disease caused by many proinflammatory factors, such as TNF and IL-1ß. Migration inhibitory factor (MIF) is an upstream inflammatory factor widely expressed in vivo that is associated with a variety of inflammatory diseases or malignant tumors and has potential therapeutic value in many diseases. We explored the role of MIF in intervertebral disc degeneration by regulating the content of exogenous MIF or the expression of MIF in cells. Upon inducing degeneration of nucleus pulposus (NP) cells with IL-1ß, we found that the increase in intracellular and exogenous MIF promoted the catabolism induced by proinflammatory factors in NP cells, while silencing of the MIF gene alleviated the degeneration to some extent. In a mouse model, the intervertebral disc degeneration of MIF-KO mice was significantly less than that of wild-type mice. To explore the treatment of intervertebral disc degeneration, we selected the small-molecular MIF inhibitor CPSI-1306. CPSI-1306 had a therapeutic effect on intervertebral disc degeneration in the mouse model. In summary, we believe that MIF plays an important role in intervertebral disc degeneration and is a potential therapeutic target for the treatment of intervertebral disc degeneration.


Subject(s)
Intervertebral Disc Degeneration , Intervertebral Disc , Macrophage Migration-Inhibitory Factors , Nucleus Pulposus , Mice , Animals , NF-kappa B/metabolism , Intervertebral Disc Degeneration/metabolism , Signal Transduction/physiology , Macrophage Migration-Inhibitory Factors/metabolism , Nucleus Pulposus/metabolism , Intervertebral Disc/metabolism
11.
Front Microbiol ; 14: 1190530, 2023.
Article in English | MEDLINE | ID: mdl-37744897

ABSTRACT

Introduction: The phenotypic screening of drugs against Balamuthia mandrillaris, a neuropathogenic amoeba, involves two simultaneous phases: an initial step to test amoebicidal activity followed by an assay for cytotoxicity to host cells. The emergence of three-dimensional (3D) cell cultures has provided a more physiologically relevant model than traditional 2D cell culture for studying the pathogenicity of B. mandrillaris. However, the measurement of ATP, a critical indicator of cell viability, is complicated by the overgrowth of B. mandrillaris in coculture with host cells during drug screening, making it challenging to differentiate between amoebicidal activity and drug toxicity to human cells. Methods: To address this limitation, we introduce a novel assay that utilizes three-dimensional hanging spheroid plates (3DHSPs) to evaluate both activities simultaneously on a single platform. Results and discussion: Our study showed that the incubation of neurospheroids with clinically isolated B. mandrillaris trophozoites resulted in a loss of neurospheroid integrity, while the ATP levels in the neurospheroids decreased over time, indicating decreased host cell viability. Conversely, ATP levels in isolated trophozoites increased, indicating active parasite metabolism. Our findings suggest that the 3DHSP-based assay can serve as an endpoint for the phenotypic screening of drugs against B. mandrillaris, providing a more efficient and accurate approach for evaluating both parasite cytotoxicity and viability.

12.
J Exp Psychol Gen ; 152(8): 2190-2204, 2023 Aug.
Article in English | MEDLINE | ID: mdl-36951742

ABSTRACT

Humans continuously scan their visual environment for relevant information. Such visual search behavior has typically been studied with tasks in which the search goal is constant and well-defined, requiring relatively little interplay between memory and orienting. Here we studied a situation in which the target is not known in advance, and instead, memory needs to be dynamically updated during the actual search. Observers compared two simultaneously presented arrays of objects for any matching pair of items-a task that requires continuous comparisons between what is seen now and what was seen a few moments ago. To manipulate the balance between memorizing and scanning, we ran two versions of the task. In an eye-tracking version, the objects were continuously available and could be scanned with relative ease. The results suggested that observers preferred scanning over memorizing. In a mouse-tracking version, perceptual availability was limited, and scanning was slowed. Now observers substantially increased their memory use. Thus, the results revealed a flexible and dynamic interplay between memory and perception. The findings aid in further bridging the research fields of attention and memory. (PsycInfo Database Record (c) 2023 APA, all rights reserved).


Subject(s)
Attention , Motivation , Humans , Visual Perception , Memory, Short-Term
13.
Iran J Basic Med Sci ; 26(2): 157-163, 2023 Feb.
Article in English | MEDLINE | ID: mdl-36742139

ABSTRACT

Objectives: Recently, studies on microRNAs (miRNAs) and their targets and related genes have provided new therapeutic opportunities for controlling intervertebral disc degeneration (IDD). We aimed to investigate the effects of miR-148a-3p overexpression on IDD progression. Materials and Methods: This study used microRNA microarrays to analyze key regulators of IDD. Q-PCR was used to verify the IL-1ß-induced down-regulation of miR-148a-3p expression both in nucleus pulposus (NP) tissues of IDD patients and in degenerated NP cells (NPCs) of rats. Rat NPC micromass cultures and ex vivo intervertebral disc (IVD) culture models were established, and histological staining was performed to verify the effect of miR-148a-3p on the general morphology and proteoglycan and collagen contents of IVDs. In addition, q-PCR and western blotting analyses were performed to examine the expression of ECM molecules and matrix-degrading enzymes. A luciferase reporter assay was used to confirm the target genes of miR-148a-3p. Results: Our data revealed that miR-148a-3p was down-regulated in IDD. Overexpression of miR-148a-3p had no effect on ACAN or COL2A1 gene expression but decreased MMP3, MMP13, and ADAMTS5 gene expression. The matrix deposited by miR-148a-3p-overexpressing rat NPCs contained high levels of proteoglycans and collagen. The ex vivo experiments verified that agomiR-148a-3p alleviated the NPC matrix degradation induced by IL-1ß. A luciferase reporter assay confirmed that miR-148a-3p directly targeted ADAMTS5 and MMP13. Conclusion: We proved that miR-148a-3p can attenuate ECM loss and protect NP function by inhibiting matrix-degrading enzymes.

14.
Biochim Biophys Acta Mol Basis Dis ; 1869(1): 166569, 2023 01 01.
Article in English | MEDLINE | ID: mdl-36243293

ABSTRACT

BACKGROUND: Hippocampus plays critical roles in drug addiction. Cocaine-induced modifications in dopamine receptor function and the downstream signaling are important regulation mechanisms in cocaine addiction. Rac regulates actin filament accumulation while Cdc42 stimulates the formation of filopodia and neurite outgrowth. Based on the region specific roles of small GTPases in brain, we focused on the hippocampal subregions to detect the regulation of Cdc42 signaling in long-term morphological and behavioral adaptations to cocaine. METHODS: Genetically modified mouse models of Cdc42, dopamine receptor D1 (D1R) and D2 (D2R) and expressed Cdc42 point mutants that are defective in binding to and activation of its downstream effector molecules PAK and N-WASP were generated, respectively, in CA1 or dentate gyrus (DG) subregion. RESULTS: Cocaine induced upregulation of Cdc42 signaling activity. Cdc42 knockout or mutants blocked cocaine-induced increase in spine plasticity in hippocampal CA1 pyramidal neurons, leading to a decreased conditional place preference (CPP)-associated memories and spatial learning and memory in water maze. Cdc42 knockout or mutants promoted cocaine-induced loss of neurogenesis in DG, leading to a decreased CPP-associated memories and spatial learning and memory in water maze. Furthermore, by using D1R knockout, D2R knockout, and D2R/Cdc42 double knockout mice, we found that D2R, but not D1R, regulated Cdc42 signaling in cocaine-induced neural plasticity and behavioral changes. CONCLUSIONS: Cdc42 acts downstream of D2R in the hippocampus and plays an important role in cocaine-induced neural plasticity through N-WASP and PAK-LIMK-Cofilin, and Cdc42 signaling pathway correlatively links specific brain regions (CA1, dentate gyrus) to cocaine-induced CPP behavior.


Subject(s)
Cocaine-Related Disorders , Cocaine , Animals , Mice , Cocaine/pharmacology , Cocaine/metabolism , Cocaine-Related Disorders/genetics , Cocaine-Related Disorders/metabolism , Dopamine/metabolism , Hippocampus/metabolism , Mice, Knockout , Receptors, Dopamine D2/genetics , Receptors, Dopamine D2/metabolism
15.
Molecules ; 27(21)2022 Oct 28.
Article in English | MEDLINE | ID: mdl-36364157

ABSTRACT

Cancer is a leading cause of death worldwide, with an increasing mortality rate over the past years. The early detection of cancer contributes to early diagnosis and subsequent treatment. How to detect early cancer has become one of the hot research directions of cancer. Tumor biomarkers, biochemical parameters for reflecting cancer occurrence and progression have caused much attention in cancer early detection. Due to high sensitivity, convenience and low cost, biosensors have been largely developed to detect tumor biomarkers. This review describes the application of various biosensors in detecting tumor markers. Firstly, several typical tumor makers, such as neuron-specific enolase (NSE), carcinoembryonic antigen (CEA), prostate-specific antigen (PSA), squamous cell carcinoma antigen (SCCA), carbohydrate, antigen19-9 (CA19-9) and tumor suppressor p53 (TP53), which may be helpful for early cancer detection in the clinic, are briefly described. Then, various biosensors, mainly focusing on electrochemical biosensors, optical biosensors, photoelectrochemical biosensors, piezoelectric biosensors and aptamer sensors, are discussed. Specifically, the operation principles of biosensors, nanomaterials used in biosensors and the application of biosensors in tumor marker detection have been comprehensively reviewed and provided. Lastly, the challenges and prospects for developing effective biosensors for early cancer diagnosis are discussed.


Subject(s)
Biosensing Techniques , Nanostructures , Neoplasms , Male , Humans , Biomarkers, Tumor , Early Detection of Cancer , Neoplasms/diagnosis , Biomarkers
16.
Article in English | MEDLINE | ID: mdl-36193143

ABSTRACT

Background: Vascular damage is a major consequence of bone fracture. Taohong Siwu decoction (TSD) can raise the expression of vascular endothelial growth factor (VEGF) in fracture healing. However, its molecular mechanism in promoting angiogenesis is still unknown. The aim of this study was to investigate the potential mechanisms of TSD in the regulation of osteo-angiogenesis in fracture healing. Methods: A rat tibial fracture model was established. After low- (4.5 g·kg-1), medium- (9 g·kg-1), and high-dose TSD (18 g·kg-1) and panax notoginsenoside (25 mg kg-1) treatment, hematoxylin-eosin staining was employed to visualize pathological changes in bone tissues. The levels of cytokines (interleukin (IL)-2, tumor necrosis factor-α (TNF-α), IL-6, and IL-1ß), thromboxane B2 (TXB2), and 6 ketone prostaglandin F1α (6-Keto-PGF1α) were quantified by enzyme-linked immunosorbent assay (ELISA). Immunofluorescence was used to identify the rat aortic endothelial cells (RAECs). Control serum, 10% TSD-containing serum, and 10% TSD-containing serum combined with hypoxia-inducible factor-1α (HIF-1α) inhibitor were used to treat the RAECs and rat osteoblasts. Transwell migration assay was utilized to examine the migration of the RAECs. The Matrigel tubulogenesis assay was used for the assessment of angiogenesis. The expression of angiogenesis- (von Hippel-Lindau tumor suppressor (VHL), HIF-1α, VEGF, angiopoietin-2 (Ang-2), and pVHL) and osteogenesis-related (alkaline phosphatase (ALP), runt-related transcription factor 2 (Runx2), and osteopontin-1 (OPN-1)) protein and gene was detected by western blot and quantitative real-time PCR (qRT-PCR). Results: Compared with the model group, TSD increased the trabecular bone areas, numbers, and thicknesses in fractured rats. In the plasma, the levels of cytokines and TXB2 in the middle- and high-dose TSD group were significantly lower than those in the model group (P < 0.01). The 6-keto-PGF1α content was increased by middle- and high-dose TSD intervention (P < 0.01). Compared to the control serum group, the angiogenesis and migration of the RAECs were enhanced in the TSD group (P < 0.001). The expression of HIF-1α, VEGF, and Ang-2 in the TSD group upregulated significantly (P < 0.001). VHL and pVHL were inhibited under TSD-containing serum treatment (P < 0.001). ALP, Runx2, and OPN-1 were increased obviously in the TSD group (P < 0.001). Nevertheless, the HIF-1α inhibitor reversed these changes (P < 0.001). Conclusion: TSD promotes angiogenesis and osteogenesis by regulating the HIF-1α signaling pathway. Meanwhile, it can effectively reduce the risk of inflammation and improve blood circulation.

17.
Curr Protoc ; 2(9): e529, 2022 Sep.
Article in English | MEDLINE | ID: mdl-36066205

ABSTRACT

Tumor spheroid models are widely used for drug screening as in vitro models of the tumor microenvironment. There are various ways in which tumor spheroid models can be prepared, including the self-assembly of cells using low-adherent plates, micro-patterned plates, or hanging-drop plates. Recently, drug high-throughput screening (HTS) approaches have incorporated the use of these culture systems. These HTS culture systems, however, require complicated equipment, such as robot arms, detectors, and software for handling solutions and data processing. Here, we describe protocols that allow tumor spheroids to be tested with different concentrations of a drug in a parallel fashion using a microfluidic device that generates a gradient of anti-cancer drugs. This microfluidic spheroid culture device with a concentration gradient generator (µFSCD-CGG) enables the formation of 50 tumor spheroids and the testing of drugs at five different concentrations. First, we provide a protocol for the fabrication of the µFSCD-CGG, which has both a culture array in which tumor cells are injected and aggregate to form spheroids and a concentration gradient generator for drug testing. Second, we provide a protocol for tumor spheroid formation and HTS of anti-cancer drugs using the device. Finally, we provide a protocol for assessing the response of tumor spheroids at different drug concentrations. To address the needs of the pharmaceutical industry, this protocol can be used for various cell types, including stem cells, and the number of tumor spheroids and drug concentration ranges that can be tested in the µFSCD-CGG can be increased. © 2022 Wiley Periodicals LLC. Basic Protocol 1: Fabrication of a microfluidic spheroid culture device with a concentration gradient generator (µFSCD-CGG) Basic Protocol 2: Seeding cells and formation of spheroids in the µFSCD-CGG Basic Protocol 3: Drug treatment and assessment of cell viability in the µFSCD-CGG.


Subject(s)
Antineoplastic Agents , Lab-On-A-Chip Devices , Antineoplastic Agents/pharmacology , Cell Line, Tumor , Drug Screening Assays, Antitumor , High-Throughput Screening Assays/methods , Microfluidics/methods , Spheroids, Cellular
18.
J Pharm Biomed Anal ; 219: 114946, 2022 Sep 20.
Article in English | MEDLINE | ID: mdl-35882177

ABSTRACT

Florfenicol (FF), used popularly in prevention and treatment of virus infections in livestock and poultry, has widely been found in eggs and harmful to human health. In this work, a sensitive and quantitative on-site detecting solution, monoclonal antibody-based carboxylated fluorescent microsphere immunochromatographic test strip assay (FM-ICTS), is design and applied for FF detection. The proposed method can sensitively detect FF in low detection limit of 0.030 ng/g and quantitatively measure its concentration from 0.1 ng/mL to 8.1 ng/mL (R2 = 0.9991) with high repeatability (CV<8.0 %). In addition, the established FM-ICTS method exhibited high measurement accuracy in FF samples as compared with HPLC-MS analysis and demonstrated satisfied recoveries (99.1-101.3 %). More importantly, the quantitative FF test strip demonstrate ultra-high stability, which presents approximately equivalent detection ability to the fresh one after stored at 4 °C for more than one year or stored at 37 °C for 60 days. Therefore, the proposed method is a promising solution for rapidly and sensitively quantitative determination of FF in eggs.


Subject(s)
Thiamphenicol , Chromatography, Affinity/methods , Eggs/analysis , Humans , Immunoassay/methods , Limit of Detection , Microspheres , Thiamphenicol/analogs & derivatives , Thiamphenicol/analysis
19.
Cancer Res ; 82(19): 3573-3587, 2022 Oct 04.
Article in English | MEDLINE | ID: mdl-35895752

ABSTRACT

Glioblastoma (GBM) is the most common type of primary adult brain tumor. Glioma stem cell (GSC) residence and temozolomide (TMZ) resistance in GBM both contribute to poor patient outcome. TRAF4 is a scaffold protein with E3 ubiquitin ligase activity that has recently been discovered to promote invasion and metastasis in several malignancies, but the effects and functions of TRAF4 in GBM remain to be determined. Here, we report that TRAF4 is preferentially overexpressed in GSCs and is required for stem-like properties as well as TMZ sensitivity in GBM cells. TRAF4 specifically interacted with the N-terminal tail of Caveolin-1 (CAV1), an important contributor to the tumorigenicity of GBM cells. TRAF4 regulated CAV1 stability by preventing ZNRF1-mediated ubiquitination and facilitating USP7-mediated deubiquitination independently of its E3 ubiquitin ligase catalytic activity. TRAF4-mediated stabilization of CAV1 activated protumorigenic AKT/ERK1/2 signaling, and disruption of this axis resulted in defects in stemness maintenance. In addition, expression of TRAF4 and CAV1 was positively correlated and predicted poor prognosis in human GBM samples. Screening of common nervous system drugs identified risperidone interaction with TRAF4, and risperidone treatment resulted in the dissociation of TRAF4 and CAV1. Importantly, pharmacologic inhibition of TRAF4 with risperidone potently inhibited self-renewal, abrogated tumorigenicity, and reversed TMZ resistance in GBM. Overall, TRAF4-mediated stabilization of CAV1 promotes stemness and TMZ resistance in GBM, providing a therapeutic strategy that could improve patient outcomes. SIGNIFICANCE: The identification of a TRAF4/Caveolin-1 axis that plays a crucial role in malignant progression of glioblastoma provides new insights into the function of TRAF4 in ubiquitin signaling and suggests TRAF4 as a potential therapeutic target.


Subject(s)
Brain Neoplasms , Glioblastoma , Brain Neoplasms/drug therapy , Brain Neoplasms/genetics , Brain Neoplasms/metabolism , Caveolin 1/genetics , Caveolin 1/metabolism , Cell Line, Tumor , Drug Resistance, Neoplasm , Glioblastoma/drug therapy , Glioblastoma/genetics , Glioblastoma/metabolism , Humans , Neoplastic Stem Cells/pathology , Proto-Oncogene Proteins c-akt/metabolism , Risperidone/metabolism , Risperidone/pharmacology , Risperidone/therapeutic use , TNF Receptor-Associated Factor 4/metabolism , Temozolomide/pharmacology , Temozolomide/therapeutic use , Ubiquitin-Protein Ligases/metabolism , Ubiquitin-Specific Peptidase 7/metabolism , Ubiquitins/metabolism
20.
IEEE Trans Image Process ; 31: 4173-4185, 2022.
Article in English | MEDLINE | ID: mdl-35700252

ABSTRACT

For a typical Scene Graph Generation (SGG) method in image understanding, there usually exists a large gap in the performance of the predicates' head classes and tail classes. This phenomenon is mainly caused by the semantic overlap between different predicates as well as the long-tailed data distribution. In this paper, a Predicate Correlation Learning (PCL) method for SGG is proposed to address the above problems by taking the correlation between predicates into consideration. To measure the semantic overlap between highly correlated predicate classes, a Predicate Correlation Matrix (PCM) is defined to quantify the relationship between predicate pairs, which is dynamically updated to remove the matrix's long-tailed bias. In addition, PCM is integrated into a predicate correlation loss function ( LPC ) to reduce discouraging gradients of unannotated classes. The proposed method is evaluated on several benchmarks, where the performance of the tail classes is significantly improved when built on existing methods.

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