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1.
Europace ; 25(12)2023 12 06.
Article in English | MEDLINE | ID: mdl-38006390

ABSTRACT

AIMS: The mechanisms of transition from regular rhythms to ventricular fibrillation (VF) are poorly understood. The concordant to discordant repolarization alternans pathway is extensively studied; however, despite its theoretical centrality, cannot guide ablation. We hypothesize that complex repolarization dynamics, i.e. oscillations in the repolarization phase of action potentials with periods over two of classic alternans, is a marker of electrically unstable substrate, and ablation of these areas has a stabilizing effect and may reduce the risk of VF. To prove the existence of higher-order periodicities in human hearts. METHODS AND RESULTS: We performed optical mapping of explanted human hearts obtained from recipients of heart transplantation at the time of surgery. Signals recorded from the right ventricle endocardial surface were processed to detect global and local repolarization dynamics during rapid pacing. A statistically significant global 1:4 peak was seen in three of six hearts. Local (pixel-wise) analysis revealed the spatially heterogeneous distribution of Periods 4, 6, and 8, with the regional presence of periods greater than two in all the hearts. There was no significant correlation between the underlying restitution properties and the period of each pixel. CONCLUSION: We present evidence of complex higher-order periodicities and the co-existence of such regions with stable non-chaotic areas in ex vivo human hearts. We infer that the oscillation of the calcium cycling machinery is the primary mechanism of higher-order dynamics. These higher-order regions may act as niduses of instability and may provide targets for substrate-based ablation of VF.


Subject(s)
Heart Ventricles , Heart , Humans , Arrhythmias, Cardiac , Ventricular Fibrillation/surgery , Action Potentials/physiology
2.
medRxiv ; 2023 Aug 21.
Article in English | MEDLINE | ID: mdl-37662394

ABSTRACT

Background: Repolarization alternans, defined as period-2 oscillation in the repolarization phase of the action potentials, provides a mechanistic link between cellular dynamics and ventricular fibrillation (VF). Theoretically, higher-order periodicities (e.g., periods 4, 6, 8,...) are expected but have minimal experimental evidence. Methods: We studied explanted human hearts obtained from recipients of heart transplantation at the time of surgery. Optical mapping of the transmembrane potential was performed after staining the hearts with voltage-sensitive fluorescent dyes. Hearts were stimulated at an increasing rate until VF was induced. Signals recorded from the right ventricle endocardial surface prior to induction of VF and in the presence of 1:1 conduction were processed using the Principal Component Analysis and a combinatorial algorithm to detect and quantify higher-order dynamics. Results were correlated to the underlying electrophysiological characteristics as quantified by restitution curves and conduction velocity. Results: A prominent and statistically significant global 1:4 peak (corresponding to period-4 dynamics) was seen in three of the six studied hearts. Local (pixel-wise) analysis revealed the spatially heterogeneous distribution of periods 4, 6, and 8, with the regional presence of periods greater than two in all the hearts. There was no significant correlation between the underlying restitution properties and the period of each pixel. Discussion: We present evidence of higher-order periodicities and the co-existence of such regions with stable non-chaotic areas in ex-vivo human hearts. We infer from the independence of the period to the underlying restitution properties that the oscillation of the excitation-contraction coupling and calcium cycling mechanisms is the primary mechanism of higher-order dynamics. These higher-order regions may act as niduses of instability that can degenerate into chaotic fibrillation and may provide targets for substrate-based ablation of VF.

3.
ArXiv ; 2023 Sep 05.
Article in English | MEDLINE | ID: mdl-37461415

ABSTRACT

The reconstruction of electrical excitation patterns through the unobserved depth of the tissue is essential to realizing the potential of computational models in cardiac medicine. We have utilized experimental optical-mapping recordings of cardiac electrical excitation on the epicardial and endocardial surfaces of a canine ventricle as observations directing a local ensemble transform Kalman Filter (LETKF) data assimilation scheme. We demonstrate that the inclusion of explicit information about the stimulation protocol can marginally improve the confidence of the ensemble reconstruction and the reliability of the assimilation over time. Likewise, we consider the efficacy of stochastic modeling additions to the assimilation scheme in the context of experimentally derived observation sets. Approximation error is addressed at both the observation and modeling stages, through the uncertainty of observations and the specification of the model used in the assimilation ensemble. We find that perturbative modifications to the observations have marginal to deleterious effects on the accuracy and robustness of the state reconstruction. Further, we find that incorporating additional information from the observations into the model itself (in the case of stimulus and stochastic currents) has a marginal improvement on the reconstruction accuracy over a fully autonomous model, while complicating the model itself and thus introducing potential for new types of model error. That the inclusion of explicit modeling information has negligible to negative effects on the reconstruction implies the need for new avenues for optimization of data assimilation schemes applied to cardiac electrical excitation.

4.
Sci Rep ; 13(1): 11788, 2023 07 21.
Article in English | MEDLINE | ID: mdl-37479707

ABSTRACT

Cardiac Purkinje networks are a fundamental part of the conduction system and are known to initiate a variety of cardiac arrhythmias. However, patient-specific modeling of Purkinje networks remains a challenge due to their high morphological complexity. This work presents a novel method based on optimization principles for the generation of Purkinje networks that combines geometric and activation accuracy in branch size, bifurcation angles, and Purkinje-ventricular-junction activation times. Three biventricular meshes with increasing levels of complexity are used to evaluate the performance of our approach. Purkinje-tissue coupled monodomain simulations are executed to evaluate the generated networks in a realistic scenario using the most recent Purkinje/ventricular human cellular models and physiological values for the Purkinje-ventricular-junction characteristic delay. The results demonstrate that the new method can generate patient-specific Purkinje networks with controlled morphological metrics and specified local activation times at the Purkinje-ventricular junctions.


Subject(s)
Benchmarking , Heart , Humans , Cardiac Conduction System Disease , Heart Conduction System , Heart Ventricles
5.
bioRxiv ; 2023 May 02.
Article in English | MEDLINE | ID: mdl-37205562

ABSTRACT

Background: Repolarization alternans, defined as period-2 oscillation in the repolarization phase of the action potentials, is one of the cornerstones of cardiac electrophysiology as it provides a mechanistic link between cellular dynamics and ventricular fibrillation (VF). Theoretically, higher-order periodicities (e.g., period-4, period-8,...) are expected but have very limited experimental evidence. Methods: We studied explanted human hearts, obtained from the recipients of heart transplantation at the time of surgery, using optical mapping technique with transmembrane voltage-sensitive fluorescent dyes. The hearts were stimulated at an increasing rate until VF was induced. The signals recorded from the right ventricle endocardial surface just before the induction of VF and in the presence of 1:1 conduction were processed using the Principal Component Analysis and a combinatorial algorithm to detect and quantify higher-order dynamics. Results: A prominent and statistically significant 1:4 peak (corresponding to period-4 dynamics) was seen in three of the six studied hearts. Local analysis revealed the spatiotemporal distribution of higher-order periods. Period-4 was localized to temporally stable islands. Higher-order oscillations (period-5, 6, and 8) were transient and primarily occurred in arcs parallel to the activation isochrones. Discussion: We present evidence of higher-order periodicities and the co-existence of such regions with stable non-chaotic areas in ex-vivo human hearts before VF induction. This result is consistent with the period-doubling route to chaos as a possible mechanism of VF initiation, which complements the concordant to discordant alternans mechanism. The presence of higher-order regions may act as niduses of instability that can degenerate into chaotic fibrillation.

6.
ArXiv ; 2023 Apr 22.
Article in English | MEDLINE | ID: mdl-36776816

ABSTRACT

Over the past two decades there has been a steady trend towards the development of realistic models of cardiac conduction with increasing levels of detail. However, making models more realistic complicates their personalization and use in clinical practice due to limited availability of tissue and cellular scale data. One such limitation is obtaining information about myocardial fiber organization in the clinical setting. In this study, we investigated a chimeric model of the left atrium utilizing clinically derived patient-specific atrial geometry and a realistic, yet foreign for a given patient fiber organization. We discovered that even significant variability of fiber organization had a relatively small effect on the spatio-temporal activation pattern during regular pacing. For a given pacing site, the activation maps were very similar across all fiber organizations tested.

7.
IEEE Trans Biomed Eng ; 70(5): 1611-1621, 2023 05.
Article in English | MEDLINE | ID: mdl-36399589

ABSTRACT

Over the past two decades there has been a steady trend towards the development of realistic models of cardiac conduction with increasing levels of detail. However, making models more realistic complicates their personalization and use in clinical practice due to limited availability of tissue and cellular scale data. One such limitation is obtaining information about myocardial fiber organization in the clinical setting. In this study, we investigated a chimeric model of the left atrium utilizing clinically derived patient-specific atrial geometry and a realistic, yet foreign for a given patient fiber organization. We discovered that even significant variability of fiber organization had a relatively small effect on the spatio-temporal activation pattern during regular pacing. For a given pacing site, the activation maps were very similar across all fiber organizations tested.


Subject(s)
Atrial Fibrillation , Heart Conduction System , Humans , Arrhythmias, Cardiac , Heart Atria , Heart Rate , Electricity , Cardiac Pacing, Artificial
8.
Med Biol Eng Comput ; 61(1): 75-95, 2023 Jan.
Article in English | MEDLINE | ID: mdl-36322242

ABSTRACT

Customization of cardiac action potential models has become increasingly important with the recognition of patient-specific models and virtual patient cohorts as valuable predictive tools. Nevertheless, developing customized models by fitting parameters to data poses technical and methodological challenges: despite noise and variability associated with real-world datasets, traditional optimization methods produce a single "best-fit" set of parameter values. Bayesian estimation methods seek distributions of parameter values given the data by obtaining samples from the target distribution, but in practice widely known Bayesian algorithms like Markov chain Monte Carlo tend to be computationally inefficient and scale poorly with the dimensionality of parameter space. In this paper, we consider two computationally efficient Bayesian approaches: the Hamiltonian Monte Carlo (HMC) algorithm and the approximate Bayesian computation sequential Monte Carlo (ABC-SMC) algorithm. We find that both methods successfully identify distributions of model parameters for two cardiac action potential models using model-derived synthetic data and an experimental dataset from a zebrafish heart. Although both methods appear to converge to the same distribution family and are computationally efficient, HMC generally finds narrower marginal distributions, while ABC-SMC is less sensitive to the algorithmic settings including the prior distribution.


Subject(s)
Algorithms , Zebrafish , Animals , Bayes Theorem , Monte Carlo Method , Markov Chains
9.
PLoS One ; 17(8): e0273040, 2022.
Article in English | MEDLINE | ID: mdl-35969591

ABSTRACT

Integrated health-system specialty pharmacies (IHSSP) have shown high medication access, adherence, and provider satisfaction. The goal of this study was to explore healthcare providers' experiences with specialty medications distributed via Limited Distribution Networks (LDN) that do not include IHSSPs. We investigated healthcare providers' perceived impact of LDNs on clinic workflow, clinical practice, and patient outcomes. Interviews and focus groups were conducted with fourteen healthcare providers from four outpatient specialty clinics at an academic health system with an IHSSP. Qualitative analysis using an iterative inductive/deductive approach of coded transcripts was used to identify themes. Participants discussed requirements and barriers to communicating with insurance providers, drug manufacturers, and external pharmacies; time and effort required to navigate LDNs and impact on workload and clinic workflow; financial awareness of medication costs and methods for communication about financial information with patients; and advocating for patients to ensure access to necessary therapy and avoid missed doses or treatment lapse. Participants reported barriers to navigating LDNs that can interfere with clinic workflow and patient care. IHSSPs may reduce clinic burden by helping patients access, afford, and remain on therapy.


Subject(s)
Attitude of Health Personnel , Health Personnel , Focus Groups , Humans , Patient Care , Qualitative Research
10.
Biophys J ; 121(16): 3061-3080, 2022 08 16.
Article in English | MEDLINE | ID: mdl-35836379

ABSTRACT

Epithelial-mesenchymal transition (EMT) is a biological process that plays a central role in embryonic development, tissue regeneration, and cancer metastasis. Transforming growth factor-ß (TGFß) is a potent inducer of this cellular transition, comprising transitions from an epithelial state to partial or hybrid EMT state(s), to a mesenchymal state. Recent experimental studies have shown that, within a population of epithelial cells, heterogeneous phenotypical profiles arise in response to different time- and TGFß dose-dependent stimuli. This offers a challenge for computational models, as most model parameters are generally obtained to represent typical cell responses, not necessarily specific responses nor to capture population variability. In this study, we applied a data-assimilation approach that combines limited noisy observations with predictions from a computational model, paired with parameter estimation. Synthetic experiments mimic the biological heterogeneity in cell states that is observed in epithelial cell populations by generating a large population of model parameter sets. Analysis of the parameters for virtual epithelial cells with biologically significant characteristics (e.g., EMT prone or resistant) illustrates that these sub-populations have identifiable critical model parameters. We perform a series of in silico experiments in which a forecasting system reconstructs the EMT dynamics of each virtual cell within a heterogeneous population exposed to time-dependent exogenous TGFß dose and either an EMT-suppressing or EMT-promoting perturbation. We find that estimating population-specific critical parameters significantly improved the prediction accuracy of cell responses. Thus, with appropriate protocol design, we demonstrate that a data-assimilation approach successfully reconstructs and predicts the dynamics of a heterogeneous virtual epithelial cell population in the presence of physiological model error and parameter uncertainty.


Subject(s)
Epithelial-Mesenchymal Transition , Transforming Growth Factor beta , Epithelial Cells , Population Dynamics
11.
Chaos ; 32(6): 063117, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35778132

ABSTRACT

Computational modeling and experimental/clinical prediction of the complex signals during cardiac arrhythmias have the potential to lead to new approaches for prevention and treatment. Machine-learning (ML) and deep-learning approaches can be used for time-series forecasting and have recently been applied to cardiac electrophysiology. While the high spatiotemporal nonlinearity of cardiac electrical dynamics has hindered application of these approaches, the fact that cardiac voltage time series are not random suggests that reliable and efficient ML methods have the potential to predict future action potentials. This work introduces and evaluates an integrated architecture in which a long short-term memory autoencoder (AE) is integrated into the echo state network (ESN) framework. In this approach, the AE learns a compressed representation of the input nonlinear time series. Then, the trained encoder serves as a feature-extraction component, feeding the learned features into the recurrent ESN reservoir. The proposed AE-ESN approach is evaluated using synthetic and experimental voltage time series from cardiac cells, which exhibit nonlinear and chaotic behavior. Compared to the baseline and physics-informed ESN approaches, the AE-ESN yields mean absolute errors in predicted voltage 6-14 times smaller when forecasting approximately 20 future action potentials for the datasets considered. The AE-ESN also demonstrates less sensitivity to algorithmic parameter settings. Furthermore, the representation provided by the feature-extraction component removes the requirement in previous work for explicitly introducing external stimulus currents, which may not be easily extracted from real-world datasets, as additional time series, thereby making the AE-ESN easier to apply to clinical data.


Subject(s)
Machine Learning , Neural Networks, Computer , Action Potentials , Computer Simulation , Time Factors
12.
Mach Learn Appl ; 82022 Jun 15.
Article in English | MEDLINE | ID: mdl-35755176

ABSTRACT

In recent years, machine-learning techniques, particularly deep learning, have outperformed traditional time-series forecasting approaches in many contexts, including univariate and multivariate predictions. This study aims to investigate the capability of (i) gated recurrent neural networks, including long short-term memory (LSTM) and gated recurrent unit (GRU) networks, (ii) reservoir computing (RC) techniques, such as echo state networks (ESNs) and hybrid physics-informed ESNs, and (iii) the nonlinear vector autoregression (NVAR) approach, which has recently been introduced as the next generation RC, for the prediction of chaotic time series and to compare their performance in terms of accuracy, efficiency, and robustness. We apply the methods to predict time series obtained from two widely used chaotic benchmarks, the Mackey-Glass and Lorenz-63 models, as well as two other chaotic datasets representing a bursting neuron and the dynamics of the El Niño Southern Oscillation, and to one experimental dataset representing a time series of cardiac voltage with complex dynamics. We find that even though gated RNN techniques have been successful in forecasting time series generally, they can fall short in predicting chaotic time series for the methods, datasets, and ranges of hyperparameter values considered here. In contrast, for the chaotic datasets studied, we found that reservoir computing and NVAR techniques are more computationally efficient and offer more promise in long-term prediction of chaotic time series.

13.
Front Physiol ; 12: 734178, 2021.
Article in English | MEDLINE | ID: mdl-34646159

ABSTRACT

The electrical signals triggering the heart's contraction are governed by non-linear processes that can produce complex irregular activity, especially during or preceding the onset of cardiac arrhythmias. Forecasts of cardiac voltage time series in such conditions could allow new opportunities for intervention and control but would require efficient computation of highly accurate predictions. Although machine-learning (ML) approaches hold promise for delivering such results, non-linear time-series forecasting poses significant challenges. In this manuscript, we study the performance of two recurrent neural network (RNN) approaches along with echo state networks (ESNs) from the reservoir computing (RC) paradigm in predicting cardiac voltage data in terms of accuracy, efficiency, and robustness. We show that these ML time-series prediction methods can forecast synthetic and experimental cardiac action potentials for at least 15-20 beats with a high degree of accuracy, with ESNs typically two orders of magnitude faster than RNN approaches for the same network size.

14.
Heart Rhythm O2 ; 2(4): 394-404, 2021 Aug.
Article in English | MEDLINE | ID: mdl-34430945

ABSTRACT

BACKGROUND: In March 2020, hydroxychloroquine (HCQ) alone or combined with azithromycin (AZM) was authorized as a treatment for COVID-19 in many countries. The therapy proved ineffective with long QT and deadly cardiac arrhythmia risks, illustrating challenges to determine the new safety profile of repurposed drugs. OBJECTIVE: To investigate proarrhythmic effects and mechanism of HCQ and AZM (combined and alone) with high doses of HCQ as in the COVID-19 clinical trials. METHODS: Proarrhythmic effects of HCQ and AZM are quantified using optical mapping with voltage-sensitive dyes in ex vivo Langendorff-perfused guinea pig (GP) hearts and with numerical simulations of a GP Luo-Rudy and a human O'Hara-Virag-Varro-Rudy models, for Epi, Endo, and M cells, in cell and tissue, incorporating the drug's effect on cell membrane ionic currents. RESULTS: Experimentally, HCQ alone and combined with AZM leads to long QT intervals by prolonging the action potential duration and increased spatial dispersion of action potential (AP) repolarization across the heart, leading to proarrhythmic discordant alternans. AZM alone had a lesser arrhythmic effect with less triangulation of the AP shape. Mathematical cardiac models fail to reproduce most of the arrhythmic effects observed experimentally. CONCLUSIONS: During public health crises, the risks and benefits of new and repurposed drugs could be better assessed with alternative experimental and computational approaches to identify proarrhythmic mechanisms. Optical mapping is an effective framework suitable to investigate the drug's adverse effects on cardiac cell membrane ionic channels at the cellular level and arrhythmia mechanisms at the tissue and whole-organ level.

15.
Front Physiol ; 12: 681943, 2021.
Article in English | MEDLINE | ID: mdl-34135774

ABSTRACT

Genetic mutations in genes encoding for potassium channel protein structures have been recently associated with episodes of atrial fibrillation in asymptomatic patients. The aim of this study is to investigate the potential arrhythmogenicity of three gain-of-function mutations related to atrial fibrillation-namely, KCNH2 T895M, KCNH2 T436M, and KCNE3-V17M-using modeling and simulation of the electrophysiological activity of the heart. A genetic algorithm was used to tune the parameters' value of the original ionic currents to reproduce the alterations experimentally observed caused by the mutations. The effects on action potentials, ionic currents, and restitution properties were analyzed using versions of the Courtemanche human atrial myocyte model in different tissues: pulmonary vein, right, and left atrium. Atrial susceptibility of the tissues to spiral wave generation was also investigated studying the temporal vulnerability. The presence of the three mutations resulted in an overall more arrhythmogenic substrate. Higher current density, action potential duration shortening, and flattening of the restitution curves were the major effects of the three mutations at the single-cell level. The genetic mutations at the tissue level induced a higher temporal vulnerability to the rotor's initiation and progression, by sustaining spiral waves that perpetuate until the end of the simulation. The mutation with the highest pro-arrhythmic effects, exhibiting the widest sustained VW and the smallest meandering rotor's tip areas, was KCNE3-V17M. Moreover, the increased susceptibility to arrhythmias and rotor's stability was tissue-dependent. Pulmonary vein tissues were more prone to rotor's initiation, while in left atrium tissues rotors were more easily sustained. Re-entries were also progressively more stable in pulmonary vein tissue, followed by the left atrium, and finally the right atrium. The presence of the genetic mutations increased the susceptibility to arrhythmias by promoting the rotor's initiation and maintenance. The study provides useful insights into the mechanisms underlying fibrillatory events caused by KCNH2 T895M, KCNH2 T436M, and KCNE3-V17M and might aid the planning of patient-specific targeted therapies.

16.
Intellect Dev Disabil ; 59(2): 123-140, 2021 04 01.
Article in English | MEDLINE | ID: mdl-33793785

ABSTRACT

This study identifies factors (state of residence, personal characteristics, and living situation) associated with access to self-directed funding (SDF) for adults with intellectual disability in the United States. Data from 10,033 participants from 26 states in the 2012-2013 National Core Indicators Adult Consumer Survey were analyzed. We examined state, age group, residence type, disability diagnoses, mental health status, and type of disability support funding used. Availability of SDF for people with ID varied by state and aligned mostly with state-by-state policy data on SDF eligibility and availability. The results of a logistic regression analysis demonstrated that access to SDF was lower in older adults and higher for people who lived in their parents' or relatives' home, an independent home, and with certain personal characteristics. Potential influences from policy and practice, and approaches to increase access to SDF are discussed.


Subject(s)
Disabled Persons , Intellectual Disability , Aged , Eligibility Determination , Housing , Humans , Policy , United States
17.
Chaos ; 31(1): 013118, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33754752

ABSTRACT

Reconstructions of excitation patterns in cardiac tissue must contend with uncertainties due to model error, observation error, and hidden state variables. The accuracy of these state reconstructions may be improved by efforts to account for each of these sources of uncertainty, in particular, through the incorporation of uncertainty in model specification and model dynamics. To this end, we introduce stochastic modeling methods in the context of ensemble-based data assimilation and state reconstruction for cardiac dynamics in one- and three-dimensional cardiac systems. We propose two classes of methods, one following the canonical stochastic differential equation formalism, and another perturbing the ensemble evolution in the parameter space of the model, which are further characterized according to the details of the models used in the ensemble. The stochastic methods are applied to a simple model of cardiac dynamics with fast-slow time-scale separation, which permits tuning the form of effective stochastic assimilation schemes based on a similar separation of dynamical time scales. We find that the selection of slow or fast time scales in the formulation of stochastic forcing terms can be understood analogously to existing ensemble inflation techniques for accounting for finite-size effects in ensemble Kalman filter methods; however, like existing inflation methods, care must be taken in choosing relevant parameters to avoid over-driving the data assimilation process. In particular, we find that a combination of stochastic processes-analogously to the combination of additive and multiplicative inflation methods-yields improvements to the assimilation error and ensemble spread over these classical methods.


Subject(s)
Heart , Stochastic Processes , Uncertainty
18.
Chaos ; 31(2): 023139, 2021 Feb.
Article in English | MEDLINE | ID: mdl-33653066

ABSTRACT

Certain cardiac arrhythmias are preceded by electrical alternans, a state characterized by beat-to-beat alternation in cellular action potential duration. Cardiac alternans may arise from different mechanisms including instabilities in voltage or intracellular calcium cycling. Although a number of techniques have been proposed to suppress alternans, these methods have mainly been tested using models that do not support calcium-driven alternans. Therefore, it is important to understand how control methods may perform when alternans is driven by instabilities in calcium cycling. In this study, we applied controllability analysis to a discrete map of alternans dynamics in a cardiac cell. We compared two different controllability measures to determine to what extent different control strategies could suppress alternans and tested these predictions using three feedback controllers. We found a modal controllability measure, unlike the minimum singular value of the controllability matrix, consistently indicated the control strategies requiring the least control effort and yielding the smallest closed-loop eigenvalue. In addition, action potential duration was identified as the most effective variable through which control can be applied, regardless of alternans mechanism, although sarcoplasmic reticulum calcium load was also useful for the calcium-driven alternans cases.


Subject(s)
Calcium , Myocytes, Cardiac , Action Potentials , Calcium/metabolism , Calcium Signaling , Myocytes, Cardiac/metabolism , Sarcoplasmic Reticulum/metabolism
19.
Article in English | MEDLINE | ID: mdl-35754517

ABSTRACT

Aims: Cardiac modeling in heart structures for the study of arrhythmia mechanisms requires the use of software that runs on supercomputers. Therefore, computational studies are limited to groups with access to computer clusters and personnel with high-performance computing experience. We present how to use and implement WebGL programs via a custom-written library to run and visualize simulations of the most complex ionic models in 2D and 3D, in real time, interactively using the multi-core GPU of a single computer. Methods: We use Abubu.js, a library we developed for solving partial differential equations such as those describing crystal growth and fluid flow, along with a newly implemented visualization algorithm, to simulate complex ionic cell models. By combining this library with JavaScript, we allow direct real-time interactions with simulations. We implemented: 1) modification of any model parameters and equations at any time, with direct access to the code while it runs, 2) electrode stimulation anywhere in the 2D/3D tissue with a mouse click, 3) saving the solution of the system at any time to re-initiate the dynamics from saved initial conditions, and 4) rotation/visualization of 3D structures at any angle. Results: As examples of this modeling platform, we implemented a phenomenological cell model and the human ventricular OVVR model (41 variables). In 2D we illustrate the dynamics in an annulus, disk, and square tissue; in 2D and 3D porcine ventricles, we show the initiation of functional/anatomical reentry, spiral wave dynamics in different regimes, initiation of early afterdepolarizations (EADs), and the effects of model parameter variations in real time. Conclusions: We present the first simulations of complex models in anatomical structures with enhanced visualization and extended interactivity that run on a single PC, without software downloads, and as fast as in real-time even for 3D full ventricles.

20.
Article in English | MEDLINE | ID: mdl-35754519

ABSTRACT

Long-QT is commonly associated with an increased risk of polymorphic ventricular tachycardia from drug therapy. However, not all drugs prolonging QT interval are proarrhythmic. This study aimed to characterize cellular and tissue mechanisms under which QT-interval prolonging drugs and their combination are proarrhythmic, examining arrhythmia susceptibility due to action potential (AP) triangulation and spatial dispersion of action potential duration (APD). Additionally, we aimed to elucidate that Torsades de Pointe (TdP) associated with long-QT are not necessarily caused by early-after-depolarization (EADs) but are related to the presence of AP alternans in both time and space. Isolated Guinea Pig hearts were Langendorff perfused, and optical mapping was done with a voltage dye-sensitive dye. Two commonly used drugs at the beginning of the COVID-19 pandemic, hydroxychloroquine (HCQ) and Azithromycin (AZM), were added to study the effects of QT interval prolongation. Alternans in time and space were characterized by performing restitution pacing protocols. Comparing APs, HCQ prolongs APD during phase-III repolarization, resulting in a higher triangulation ratio than AZM alone or AZM combined with HCQ. Lower triangulation ratios with AZM are associated with phase-II prolongation, lower arrhythmia, and lower incidence of spatially discordant alternans.

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