The Evolutionary History of New Zealand Deschampsia Is Marked by Long-Distance Dispersal, Endemism, and Hybridization.

The contrasting evolutionary histories of endemic versus related cosmopolitan species provide avenues to understand the spatial drivers and limitations of biodiversity. Here, we investigated the evolutionary history of three New Zealand endemic Deschampsia species, and how they are related to cosmopolitan D. cespitosa. We used RADseq to test species delimitations, infer a dated species tree, and investigate gene flow patterns between the New Zealand endemics and the D. cespitosa populations of New Zealand, Australia and Korea. Whole plastid DNA analysis was performed on a larger worldwide sampling. Morphometrics of selected characters were applied to New Zealand sampling. Our RADseq review of over 55 Mbp showed the endemics as genetically well-defined from each other. Their last common ancestor with D. cespitosa lived during the last ten MY. The New Zealand D. cespitosa appears in a clade with Australian and Korean samples. Whole plastid DNA analysis revealed the endemics as members of a southern hemisphere clade, excluding the extant D. cespitosa of New Zealand. Both data provided strong evidence for hybridization between D. cespitosa and D. chapmanii. Our findings provide evidence for at least two migration events of the genus Deschampsia to New Zealand and hybridization between D. cespitosa and endemic taxa.

Chromosomal Differentiation of Deschampsia (Poaceae) Based on Four Satellite DNA Families.

Diverse families of satellite DNA (satDNA) were detected in heterochromatin regions of Deschampsia. This kind of repetitive DNA consists of tandem repeat sequences forming big arrays in genomes, and can contribute to lineages differentiation. The differentiation between types of satDNA is related to their sequence identity, the size and number of monomers forming the array, and their chromosomal location. In this work, four families of satDNA (D2, D3, D12, D13), previously isolated by genomic analysis, were studied on chromosomal preparations of 12 species of Deschampsia (D. airiformis, D. antarctica, D. cespitosa, D. cordillerarum, D. elongata, D. kingii, D. laxa, D. mendocina, D. parvula, D. patula, D. venustula, and Deschampsia sp) and one of Deyeuxia (D. eminens). Despite the number of satDNA loci showing interspecific variation, the general distribution pattern of each satDNA family is maintained. The four satDNA families are AT-rich and associated with DAPI + heterochromatin regions. D2, D3, and D12 have mainly subterminal distribution, while D13 is distributed in intercalary regions. Such conservation of satDNA patterns suggests a not random distribution in genomes, where the variation between species is mainly associated with the array size and the loci number. The presence of satDNA in all species studied suggests a low genetic differentiation of sequences. On the other hand, the variation of the distribution pattern of satDNA has no clear association with phylogeny. This may be related to high differential amplification and contraction of sequences between lineages, as explained by the library model.

The genus Deschampsia and the epithet " alpina".

The epithet "alpina" has been recurrently used in the genus Deschampsia to name plants located in northern regions of Europe, Asia and North America, as a species (Deschampsiaalpina (L.) Roem. & Schult.), but also in infraspecific categories (Deschampsiacespitosasubsp.alpina Tzvel. and Deschampsiacespitosavar.alpina Schur.). The morphological and molecular available evidence suggests the existence of a single species, Deschampsiacespitosa (L.) P. Beauv., in which individuals belonging to the same morphological gradient have received different names in different taxonomic categories throughout its wide distribution range. An evaluation of the available names indicates that all uses of the epithet "alpina" are illegitimate. A new combination is proposed at the infraspecific level as Deschampsiacespitosasubsp.neoalpina Chiapella, Xue & Greimler.

Unveiling new sequestrate Cortinarius species from northern Patagonian Nothofagaceae forests based on molecular and morphological data.

Because of systematic sampling campaigns in the northern Patagonian Nothofagaceae forests of Argentina, several specimens of sequestrate fungi were collected. Some of those collections showed phylogenetic affinities and morphological similarities to members of the formerly recognized sequestrate genus Thaxterogaster, currently a synonym of Cortinarius on the basis of molecular data. Comparisons of macro- and micromorphological features and sequences of nuc rDNA internal transcribed spacer (ITS) regions have revealed that these collections belong to formerly undescribed species. The sequences of the four new taxa presented here, Cortinarius flavopurpureus, C. translucidus, C. nahuelhuapensis, and C. infrequens, were combined into a data set including additional sequences generated from herbarium collections and retrieved from public gene databases and analyzed by maximum likelihood and Bayesian inference methods. The four new species were resolved as distinct clades with strong support; at the same time, they showed unique morphological characteristics (hypogeous to subhypogeous habit, complete gasteromycetation, and spore shape and ornamentation) that separate them from previously described Cortinarius species. In addition, several undescribed and/or not previously sequenced species from these forests were detected through phylogenetic analysis of ectomycorrhizal root tip sequences. A key of characters to identify the sequestrate Cortinarius from Patagonia is provided.

The Plastid Genome of Deschampsia cespitosa (Poaceae).

Plastid genome analysis of non-model organisms provides valuable information for basic research e.g., molecular evolutionary genomics, phylogeny and phylogeography. Deschampsia cespitosa is the most widespread species of the genus and it is a common grass that is found across Eurasia and North America. Scattered populations in regions of appropriate ecological conditions are also found in Australia, New Zealand and southern South America, where it is sympatric with D. antarctica. We analyzed the plastid genome of a sample of Deschampsia cespitosa of the Austrian Alps using high-throughput sequencing. The plastid (cp) genome shows the typical quadripartite structure with a length of 135,340 bp, comprising a large single-copy (LSC) region of 79,992 bp, a small single-copy (SSC) region of 12,572 bp and two inverted repeats (IR) regions of 21,388 bp each. It contains 115 genes, including 85 protein-coding genes, four ribosomal RNA genes and 30 transfer RNA genes. The GC content (%), number of repeats and microsatellites, RNA editing sites and codon usage were highly similar to those of D. antarctica. The results of this present study highlight the extremely conserved nature of the cp genome in this group, since the comparison involved individuals separated by about 13,000 km, from the Alps to Antarctica.

Munroa argentina, a Grass of the South American Transition Zone, Survived the Andean Uplift, Aridification and Glaciations of the Quaternary.

The South American Transition Zone (SATZ) is a biogeographic area in which not only orogeny (Andes uplift) and climate events (aridification) since the mid-Miocene, but also Quaternary glaciation cycles had an important impact on the evolutionary history of the local flora. To study this effect, we selected Munroa argentina, an annual grass distributed in the biogeographic provinces of Puna, Prepuna and Monte. We collected 152 individuals from 20 localities throughout the species' range, ran genetic and demographic analyses, and applied ecological niche modeling. Phylogenetic and population genetic analyses based on cpDNA and AFLP data identified three phylogroups that correspond to the previously identified subregions within the SATZ. Molecular dating suggests that M. argentina has inhabited the SATZ since approximately 3.4 (4.2-1.2) Ma and paleomodels predict suitable climate in these areas during the Interglacial period and the Last Glacial Maximum. We conclude that the current distribution of M. argentina resulted from the fragmentation of its once continuous range and that climate oscillations promoted ecological differences that favored isolation by creating habitat discontinuity.

Plant endemism in the Sierras of Córdoba and San Luis (Argentina): understanding links between phylogeny and regional biogeographical patterns.

We compiled a checklist with all known endemic plants occurring in the Sierras of Córdoba and San Luis, an isolated mountainous range located in central Argentina. In order to obtain a better understanding of the evolutionary history, relationships and age of the regional flora, we gathered basic information on the biogeographical and floristic affinities of the endemics, and documented the inclusion of each taxon in molecular phylogenies. We listed 89 taxa (including 69 species and 20 infraspecific taxa) belonging to 53 genera and 29 families. The endemics are not distributed evenly, being more abundant in the lower than in the middle and upper vegetation belts. Thirty-two genera (60.3%) have been included in phylogenetic analyses, but only ten (18.8%) included local endemic taxa. A total of 28 endemic taxa of the Sierras CSL have a clear relationship with a widespread species of the same genus, or with one found close to the area. Available phylogenies for some taxa show divergence times between 7.0 - 1.8 Ma; all endemic taxa are most probably neoendemics sensu Stebbins and Major. Our analysis was specifically aimed at a particular geographic area, but the approach of analyzing phylogenetic patterns together with floristic or biogeographical relationships of the endemic taxa of an area, delimited by clear geomorphological features, could reveal evolutionary trends shaping the area.

ResumenSe presenta una lista comentada de todas las especies endémicas conocidas de las Sierras de Córdoba y San Luis, una región montañosa aislada del centro de Argentina. A fin de obtener una mejor comprensión de la historia evolutiva, relaciones y edad de la flora regional, recopilamos información básica sobre afinidades florísiticas y biogeográficas de las endémicas, y relevamos su inclusión en estudios filogenéticos moleculares. El listado incluye 89 taxones (69 species y 20 taxones infraespecíficos), pertenecientes a 53 géneros y 29 familias. La distribución altitudinal de los endemismos no es uniforme, ya que el piso de vegetación inferior tiene más taxones endémicos que los pisos intermedio y superior. Treinta y dos géneros (60.3%) han sido incluidos en algún análisis filogenético, pero sólo 10 de ellos (18.8%) incluyeron taxones locales. Un total de 28 taxones endémicos de las Sierras CSL tienen una clara relación con una especie de amplia distribución del mismo género, o con una de distribución cercana al área. Las filogenias disponibles para algunos taxones muestran tiempos de divergencia entre 7.0 ­ 1.8 Ma; todos los endemismos del área son probablemente neoendemismos sensu Stebbins y Major. Aunque nuestro análisis estaba dirigido específicamente a un área geográfica particular, el enfoque de analizar patrones filogenéticos junto con relaciones florísticas y biogeográficas de los endemismos de un área delimitada por características geomorfológicas, podría revelar las tendencias evolutivas que modelaron el área.

Molecular phylogeny of Gymnocalycium (Cactaceae): assessment of alternative infrageneric systems, a new subgenus, and trends in the evolution of the genus.

PREMISE OF THE STUDY: The South American genus Gymnocalycium (Cactoideae-Trichocereae) demonstrates how the sole use of morphological data in Cactaceae results in conflicts in assessing phylogeny, constructing a taxonomic system, and analyzing trends in the evolution of the genus. METHODS: Molecular phylogenetic analysis was performed using parsimony and Bayesian methods on a 6195-bp data matrix of plastid DNA sequences (atpI-atpH, petL-psbE, trnK-matK, trnT-trnL-trnF) of 78 samples, including 52 species and infraspecific taxa representing all the subgenera of Gymnocalycium. We assessed morphological character evolution using likelihood methods to optimize characters on a Bayesian tree and to reconstruct possible ancestral states. KEY RESULTS: The results of the phylogenetic study confirm the monophyly of the genus, while supporting overall the available infrageneric classification based on seed morphology. Analysis showed the subgenera Microsemineum and Macrosemineum to be polyphyletic and paraphyletic. Analysis of morphological characters showed a tendency toward reduction of stem size, reduction in quantity and hardiness of spines, increment of seed size, development of napiform roots, and change from juicy and colorful fruits to dry and green fruits. CONCLUSIONS: Gymnocalycium saglionis is the only species of Microsemineum and a new name is required to identify the clade including the remaining species of Microsemineum; we propose the name Scabrosemineum in agreement with seed morphology. Identifying morphological trends and environmental features allows for a better understanding of the events that might have influenced the diversification of the genus.

A morphological and molecular study in the Deschampsia cespitosa complex (Poaceae; Poeae; Airinae) in northern North America.

PREMISE OF THE STUDY: In the North American Arctic, the existence of one or several taxa closely related to Deschampsia cespitosa var. cespitosa has remained a puzzle for many years. Extreme morphological variation, lack of clear limits between alleged forms, and an extended geographic range often render identification keys incomplete, and raise the question of how many species this taxon represents. METHODS: Morphological and molecular analysis, including multivariate statistics, ITS and the cpDNA marker trnK-rps16, was conducted on D. cespitosa var. cespitosa and related taxa using 201 herbarium specimens from northern North America (Alaska, Canada, and Greenland). Fifty-three morphological centeracters were recorded from all specimens, while sequences were retrieved from 167 specimens. KEY RESULTS: Results show that Deschampsia cespitosa (L.) P. Beauv. var. cespitosa, D. cespitosa subsp. alpina (L.) Tzvelev, D. cespitosa subsp. beringensis (Hultén) W. E. Lawr., D. brevifolia R. Br., D. cespitosa (L.) P. Beauv. subsp. glauca (Hartm.) C. Hartm., D. mackenzieana Raup, D. cespitosa subsp. orientalis Hultén, and D. pumila (Griseb.) Ostenf. differed significantly in a few morphological variables, but molecularly are a closely related group with several sequences and haplotypes that are nearly identical. CONCLUSIONS: Overall, the evidence points to the existence of a single species, Deschampsia cespitosa. The occurrence of slightly different morphological types related to specific geographical distributions allows recognition of three additional taxa at the infraspecific level, D. cespitosa subsp. alpina, D. cespitosa subsp. beringensis, and D. brevifolia. All studied taxa showed morphological variation in a gradient, suggesting the existence of phenotypic plasticity.