ABSTRACT
BACKGROUND: Atherosclerosis is the main cause of cardiovascular diseases such as ischemic stroke and coronary heart disease. Gene-specific promoter methylation changes have been suggested as one of the causes underlying the development of atherosclerosis. We aimed to identify and validate specific genes that are differentially expressed through promoter methylation in atherosclerotic plaques. We performed the present study in four steps: (1) profiling and identification of gene-specific promoter methylation changes in atherosclerotic tissues; (2) validation of the promoter methylation changes of genes in plaques by comparison with non-plaque intima; (3) evaluation of promoter methylation status of the genes in vascular cellular components composing atherosclerotic plaques; and (4) evaluation of promoter methylation differences in genes among monocytes, T cells, and B cells isolated from the blood of ischemic stroke patients. RESULTS: Upon profiling, AIRE1, ALOX12, FANK1, NETO1, and SERHL2 were found to have displayed changes in promoter methylation. Of these, AIRE1 and ALOX12 displayed higher methylation levels in plaques than in non-plaque intima, but lower than those in the buffy coat of blood. Between inflammatory cells, the three genes were significantly less methylated in monocytes than in T and B cells. In the vascular cells, AIRE1 methylation was lower in endothelial and smooth muscle cells. ALOX12 methylation was higher in endothelial, but lower in smooth muscle cells. Immunofluorescence staining showed that co-localization of ALOX12 and AIRE1 was more frequent in CD14(+)-monocytes than in CD4(+)-T cell in plaque than in non-plaque intima. CONCLUSIONS: Promoter methylation changes in AIRE1 and ALOX12 occur in atherosclerosis and can be considered as novel epigenetic markers.
Subject(s)
Arachidonate 12-Lipoxygenase/genetics , Atherosclerosis/genetics , Epigenesis, Genetic , Transcription Factors/genetics , Atherosclerosis/metabolism , Biomarkers/metabolism , DNA Methylation , Endothelium, Vascular/metabolism , Lymphocytes/metabolism , Monocytes/metabolism , Muscle, Smooth, Vascular/metabolism , Plaque, Atherosclerotic/genetics , Promoter Regions, Genetic , AIRE ProteinABSTRACT
An orange, rod-shaped, gliding bacterium, designated strain CBA3208T, was isolated from sea water of Jeju Island, Republic of Korea. Cells were observed to be Gram-stain negative, strictly aerobic, catalase positive and oxidase negative and to hydrolyse starch, gelatin, and Tweens 40 and 80. The major fatty acids were identified as iso-C15:0, iso-C17:0 3-OH, and iso-C15:1 G. The only isoprenoid quinone was found to be menaquinone-6 (MK-6) and the major polar lipids were identified as phosphatidylethanolamine, two aminolipids and four unidentified polar lipids. The DNA G+C content of strain CBA3208T was determined to be 34.9 mol%. Strain CBA3208T is considered to represent a novel species of the genus Aquimarina, for which the name Aquimarina seongsanensis sp. nov. is proposed based on this polyphasic taxonomic analysis. The type strain is CBA3208T (=KACC 17667T =JCM 19529T).
Subject(s)
Bacteria/isolation & purification , Sequence Analysis, DNA , Bacteria/genetics , Bacterial Typing Techniques , Base Composition , DNA, Bacterial , Fatty Acids , Phylogeny , RNA, Ribosomal, 16S , Republic of Korea , Seawater/microbiology , Vitamin K 2ABSTRACT
Strain CBA3207T, a novel Gram-stain-negative, aerobic and rod-shaped bacterium, was isolated from the seashore sand of Jeju island in South Korea. Strain CBA3207T grew optimally at 25-30 °C and pH 7.0-7.5 with 3.0-4.0â% (w/v) NaCl. It was catalase-positive, oxidase-negative, and hydrolysed starch, gelatin, and Tweens 20, 40 and 80. The 16S rRNA gene sequence of strain CBA3207T showed 96.0, 95.6, 95.6, 95.5 and 95.5â% similarity to that of Aquimarinamytili PSC33T, Aquimarinaagarivorans HQM9T, Aquimarinalatercula DSM 2041T, Aquimarinaintermedia KMM 6258T and Aquimarinaamphilecti 92VT, respectively. The major fatty acids were iso-C15â:â0, iso-C17â:â0 3-OH, iso-C15â:â1 G and summed feature 9 (10-methyl C16â:â0 and/or iso-C17â:â1ω9c). The major respiratory quinone was menaquinone-6, and the major polar lipids were phosphatidylethanolamine, an unidentified aminolipid and six unidentified lipids. The G+C content of the genomic DNA was 38.8 mol%. Based on phenotypic, genotypic and phylogenetic analyses, strain CBA3207T represents a novel species in the genus Aquimarina, for which the name Aquimarinaversatilissp. nov. is proposed. The type strain is CBA3207T (=KACC 17666T=JCM 19528T).
Subject(s)
Flavobacteriaceae/classification , Phylogeny , Seawater/microbiology , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Flavobacteriaceae/genetics , Flavobacteriaceae/isolation & purification , Islands , Phosphatidylethanolamines/chemistry , RNA, Ribosomal, 16S/genetics , Republic of Korea , Sequence Analysis, DNA , Silicon Dioxide , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistryABSTRACT
Single-phase layered titanium carbide (TiC) was successfully synthesized by reacting carbon nanotubes (CNTs) and titanium dioxide (TiO2) under a high direct current (DC) pulse. Single-phase TiC layer fabrication is confirmed as the transformation of multi-layered graphene from MWCNTs. Therefore its thickness and width is almost identical to those of transformed graphene layers. This is the first report on the formation of single-phase layered nano-TiC. Scanning electron microscopy (SEM), x-ray diffraction (XRD), x-ray photoelectron spectroscopy (XPS) and high-resolution transmission electron microscopy (HR-TEM) were used for the characteristic analysis of single-phase layered TiC structures.
