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1.
Math Biosci Eng ; 20(5): 9041-9061, 2023 Mar 13.
Article in English | MEDLINE | ID: mdl-37161233

ABSTRACT

Garlic is a major condiment vegetable grown in South Korea. The price of garlic has a great impact on Korean society and the economy, which requires price stabilization through preemptive supply and demand management. Therefore, the government attempts to keep the price adjusted according to the predicted production cost. However, classic statistical models or well-known deep learning models have lower forecast accuracy when the number of input factors increases. The aforementioned issue could make analysis approaches and their implementation difficult, and the government would confront failure in proper supply and demand management. To solve this problem, we propose a new hybrid deep-learning approach that employs well-known attention models. Recent attention models have achieved outstanding performance in time-series dataset forecasting. However, when input datasets contain dozens or hundreds of variables, the forecasting performance cannot be guaranteed because the prediction accuracy decreases. In this study, a novel approach utilizing attention weights for forecasting prices is introduced. Experience shows that forecasting accuracy can be improved using the proposed model, which deals with different variables related to garlic prices, such as atmospheric conditions, logistics processes, and environmental circumstances. The proposed approach and its model contribute to forecasting outputs for different research domains by using a variety of attention weight models.

2.
Materials (Basel) ; 15(10)2022 May 10.
Article in English | MEDLINE | ID: mdl-35629444

ABSTRACT

Understanding the chemical reaction pathway of the metal-salt precursor is essential for modifying the properties of solution-processed metal-oxide thin films and further improving their electrical performance. In this study, we focused on the structural growth of solution-processed amorphous indium-zinc-oxide (a-IZO) films and the electrical behavior of a-IZO thin-film transistors (TFT). To this end, solution-processed a-IZO films were prepared with respect to the Zn molar ratio, and their structural characteristics were analyzed. For the structural characteristic analysis of the a-IZO film, the cross-section, morphology, crystallinity, and atomic composition characteristics were used as the measurement results. Furthermore, the chemical reaction pathway of the nitrate precursor-based IZO solution was evaluated for the growth process of the a-IZO film structure. These interpretations of the growth process and chemical reaction pathway of the a-IZO film were assumed to be due to the thermal decomposition of the IZO solution and the structural rearrangement after annealing. Finally, based on the structural/chemical results, the electrical performance of the fabricated a-IZO TFT depending on the Zn concentration was evaluated, and the electrical behavior was discussed in relation to the structural characteristics.

3.
ACS Omega ; 5(40): 26206-26210, 2020 Oct 13.
Article in English | MEDLINE | ID: mdl-33073146

ABSTRACT

A miniature millimeter-wave 5G antenna fabricated using anodized aluminum oxide (AAO) is devised and demonstrated for mobile devices. The proposed structure creates a dielectric layer on an aluminum plate using AAO topology and allows the antenna pattern to be placed on the dielectric layer. The proposed AAO-based antenna reduces the size (1.87 (0.18λ0) mm × 2.34 (0.22λ0) mm) of the antenna in proportion to the dielectric constant (εr = 6.7), which is higher than those of the conventional materials such as polycarbonates (PC) or a flame retardant (FR4). In addition, it is possible to precisely control the dielectric layer dimensions and generate a dielectric layer on the metal substrate itself, which greatly increases the design freedom. As a result, the devised antenna resonates at 29 GHz, and the measured gain is 5.02 dBi.

4.
J Microbiol Biotechnol ; 28(9): 1554-1562, 2018 Sep 28.
Article in English | MEDLINE | ID: mdl-30199924

ABSTRACT

The type I interferons (IFNs) play a vital role in activation of innate immunity in response to viral infection. Accordingly, viruses have evolved to employ various survival strategies to evade innate immune responses induced by type I IFNs. For example, HEV encoded papainlike cysteine protease (PCP) has been shown to inhibit IFN activation signaling by suppressing K63-linked de-ubiquitination of retinoic acid-inducible gene I (RIG-I) and TANK-binding kinase 1 (TBK1), thus effectively inhibiting down-stream activation of IFN signaling. In present study, we demonstrated that hepatitis E virus (HEV) inhibits poly inosinicpolycytidylic acid (poly(I:C))-induced IFN-ß transcriptional induction. Moreover, by using reporter assay with individual HEV-encoded gene, we showed that HEV methyltransferase (MeT), a non-structural protein, significantly decreases RIG-I-induced IFN-ß induction and NF-κB signaling activities in a dose-dependent manner. Taken together, we report here that MeT, along with PCP, is responsible for the inhibition of RIG-I-induced activation of type I IFNs, expanding the list of HEV-encoded antagonists of the host innate immunity.


Subject(s)
DEAD Box Protein 58/metabolism , Hepatitis E virus/enzymology , Hepatitis E virus/immunology , Interferon-beta/genetics , Methyltransferases/metabolism , Cell Line, Tumor , Cysteine Proteases/metabolism , HEK293 Cells , Humans , Immune Evasion , Interferon-beta/drug effects , NF-kappa B/genetics , NF-kappa B/metabolism , Poly I-C/pharmacology , Receptors, Immunologic , Signal Transduction , Transcriptional Activation/drug effects
5.
J Healthc Eng ; 2018: 6410180, 2018.
Article in English | MEDLINE | ID: mdl-29796233

ABSTRACT

Many hospitals and medical clinics have been using a wearable sensor in its health care system because the wearable sensor, which is able to measure the patients' biometric information, has been developed to analyze their patients remotely. The measured information is saved to a server in a medical center, and the server keeps the medical information, which also involves personal information, on a cloud system. The server and network devices are used by connecting each other, and sensitive medical records are dealt with remotely. However, these days, the attackers, who try to attack the server or the network systems, are increasing. In addition, the server and the network system have a weak protection and security policy against the attackers. In this paper, it is suggested that security compliance of medical contents should be followed to improve the level of security. As a result, the medical contents are kept safely.


Subject(s)
Cloud Computing , Computer Security , Information Storage and Retrieval/methods , Medical Informatics/instrumentation , Monitoring, Ambulatory/instrumentation , Algorithms , Biometry , Confidentiality , Data Collection , Delivery of Health Care , Electronic Health Records , Humans , Internet , Medical Records , Programming Languages
6.
J Surg Oncol ; 117(2): 236-244, 2018 Feb.
Article in English | MEDLINE | ID: mdl-28787528

ABSTRACT

BACKGROUND AND OBJECTIVES: To examine association of lympho-vascular space invasion (LVSI) with clinico-pathological factors and to evaluate survival of women with low-grade serous ovarian carcinoma containing areas of LVSI. METHODS: This is a multicenter retrospective study examining consecutive cases of surgically treated stage I-IV low-grade serous ovarian carcinoma (n = 178). Archived histopathology slides for the ovarian tumors were reviewed, and LVSI was scored as present or absent. LVSI status was correlated to clinico-pathological findings and survival outcome. RESULTS: LVSI was seen in 79 cases (44.4%, 95% confidence interval [CI] 37.1-51.7). LVSI was associated with increased risk of omental metastasis (87.0% vs 64.9%, odds ratio [OR] 3.62, P = 0.001), high pelvic lymph node ratio (median 12.9% vs 0%, P = 0.012), and malignant ascites (49.3% vs 32.6%, OR 2.01, P = 0.035). On multivariable analysis, controlling for age, stage, and cytoreductive status, presence of LVSI in the ovarian tumor remained an independent predictor for decreased progression-free survival (5-year rates 21.0% vs 35.7%, adjusted-hazard ratio 1.57, 95%CI 1.06-2.34, P = 0.026). LVSI was significantly associated with increased risk of recurrence in lymph nodes (OR 2.62, 95%CI 1.08-6.35, P = 0.047). CONCLUSION: LVSI in the ovarian tumor is associated with adverse clinico-pathological characteristics and decreased progression-free survival in women with low-grade serous ovarian carcinoma.


Subject(s)
Cystadenocarcinoma, Serous/mortality , Cytoreduction Surgical Procedures/mortality , Lymph Nodes/pathology , Lymphatic Vessels/pathology , Neoplasm Recurrence, Local/mortality , Ovarian Neoplasms/mortality , Adult , Cystadenocarcinoma, Serous/pathology , Cystadenocarcinoma, Serous/surgery , Female , Follow-Up Studies , Humans , Lymph Node Excision , Lymph Nodes/surgery , Lymphatic Vessels/surgery , Middle Aged , Neoplasm Invasiveness , Neoplasm Recurrence, Local/pathology , Neoplasm Recurrence, Local/surgery , Ovarian Neoplasms/pathology , Ovarian Neoplasms/surgery , Prognosis , Retrospective Studies , Survival Rate
7.
Oncotarget ; 8(54): 92209-92226, 2017 Nov 03.
Article in English | MEDLINE | ID: mdl-29190909

ABSTRACT

Gastric cancer (GC), one of the most common cancers worldwide, has a high mortality rate due to limited treatment options. Identifying novel and promising molecular targets is a major challenge that must be overcome if treatment of advanced GC is to be successful. Here, we used comparative genomic hybridization and gene expression microarrays to examine genome-wide DNA copy number alterations (CNAs) and global gene expression in 38 GC samples from old and young patients. We identified frequent CNAs, which included copy number gains on chromosomes 3q, 7p, 8q, 20p, and 20q and copy number losses on chromosomes 19p and 21p. The most frequently gained region was 7p21.1 (55%), whereas the most frequently deleted region was 21p11.1 (50%). Recurrent highly amplified regions 17q12 and 7q31.1-7q31.31 harbored two well-known oncogenes: ERBB2 and MET. Correlation analysis of CNAs and gene expression levels identified CAPZA2 (co-amplified with MET) and genes GRB7, MIEN1, PGAP3, and STARD3 (co-amplified with ERBB2) as potential candidate cancer-promoting genes (CPGs). Public dataset analysis confirmed co-amplification of these genes with MET or ERBB2 in GC tissue samples, and revealed that high expression (except for PGAP3) was significantly associated with shorter overall survival. Knockdown of these genes using small interfering RNA led to significant suppression of GC cell proliferation and migration. Reduced GC cell proliferation mediated by CAPZA2 knockdown was attributable to attenuated cell cycle progression and increased apoptosis. This study identified novel candidate CPGs co-amplified with MET or ERBB2, and suggests that they play a functional role in GC.

8.
PLoS One ; 12(10): e0185826, 2017.
Article in English | MEDLINE | ID: mdl-28977029

ABSTRACT

Dermatofibrosarcoma protuberans (DFSP) is a very rare soft tissue sarcoma, generally of low-grade malignancy. DFSP is locally aggressive with a high recurrence rate, but metastasis occurs rarely. To investigate the mechanism of metastasis in DFSP, we analyzed the whole exome sequencing data of serial tumor samples obtained from a patient who had a 10-year history of recurrent and metastatic DFSP. Tracking various genomic alterations, namely somatic mutations, copy number variations, and chromosomal rearrangements, we observed a dramatic change in tumor cell population during the occurrence of metastasis in this DFSP case. The new subclone that emerged in metastatic DFSP harbored a completely different set of somatic mutations and new focal amplifications, which had not been observed in the primary clone before metastasis. The COL1A1-PDGFB fusion, characteristic of DFSP, was found in all of the serial samples. Moreover, the break position on the fusion gene was identical in all samples. Based on these observations, we suggest a clonal evolution model to explain the mechanism underlying metastasis in DFSP and identified several candidate target genes responsible for metastatic DFSP by utilizing The Cancer Genome Atlas database. This is the first study to observe clonal evolution in metastatic DFSP and provide insight for a possible therapeutic strategy for imatinib-resistant or metastatic DFSP.


Subject(s)
Clonal Evolution , Dermatofibrosarcoma/pathology , Neoplasm Metastasis , Collagen Type I/genetics , Collagen Type I, alpha 1 Chain , Dermatofibrosarcoma/genetics , Gene Fusion , Humans , Male , Middle Aged , Proto-Oncogene Proteins c-sis/genetics , Recurrence
9.
Oncotarget ; 8(37): 61538-61550, 2017 Sep 22.
Article in English | MEDLINE | ID: mdl-28977883

ABSTRACT

Triple-negative breast cancer is characterized by the absence of estrogen and progesterone receptors and human epidermal growth factor receptor 2, and is associated with a poorer outcome than other subtypes of breast cancer. Moreover, there are no accurate prognostic genes or effective therapeutic targets, thereby necessitating continued intensive investigation. This study analyzed the genetic mutation landscape in 70 patients with triple-negative breast cancer by targeted exome sequencing of tumor and matched normal samples. Sequencing showed that more than 50% of these patients had deleterious mutations and homozygous deletions of DNA repair genes, such as ATM, BRCA1, BRCA2, WRN, and CHEK2. These findings suggested that a large number of patients with triple-negative breast cancer have impaired DNA repair function and that therefore a poly ADP-ribose polymerase inhibitor may be an effective drug in the treatment of this disease. Notably, homozygous deletion of three genes, EPHA5, MITF, and ACSL3, was significantly associated with an increased risk of recurrence or distant metastasis in adjuvant chemotherapy-treated patients.

10.
Neoplasia ; 19(10): 735-749, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28843398

ABSTRACT

Toxicity and resistance remain major challenges for advanced or recurrent cervical cancer therapies, as treatment requires high doses of chemotherapeutic agents. Restoration of TP53 and hypophosphorylated-retinoblastoma (pRB) proteins by human papillomavirus (HPV) E6/E7 siRNA sensitizes HPV-positive cervical cancer cells toward chemotherapeutic agents. Here, we investigated the therapeutic effects of E6/E7 siRNA on the dynamic behavior of TP53 and RB/E2F signaling networks in deciding the cell fate. The synergistic effect of HPV E6/E7 siRNA pool (SP) with chemotherapeutic agents on TP53 and RB/E2F signaling, proliferation, and apoptosis was analyzed in vitro and in vivo. Compared to the E6/E7 SP alone, E6/E7 SP with cisplatin treatment effectively restored TP53 and RB/E2F signaling and contributes to differences in cell fate, such as apoptosis or cell cycle arrest. We also developed a cellular dynamics model that includes TP53-RB/E2F dynamics and cell proliferation profiles, and confirmed its utility for investigating E6/E7 siRNA-based combination regimens. Using a dual reporter system, we further confirmed the cross talk between TP53 and RB/E2F signaling mechanisms. Treatment of E6/E7 SP cationic liposome (i.v.) with cisplatin and paclitaxel (i.p.) potentially inhibited tumor growth in BALB/c-nude mice. Altogether, our findings suggest that stabilization of TP53 and the RB/E2F repressor complex by E6/E7 SP combined with low-dose chemotherapy can effectively suppress tumor growth.


Subject(s)
Antineoplastic Agents/pharmacology , E2F Transcription Factors/genetics , Oncogene Proteins, Viral/genetics , Papillomaviridae/genetics , RNA Interference , RNA, Small Interfering , Tumor Suppressor Protein p53/genetics , Animals , Apoptosis/drug effects , Apoptosis/genetics , Cell Line, Tumor , Cell Proliferation/drug effects , Cell Proliferation/genetics , Cell Tracking , Disease Models, Animal , E2F Transcription Factors/metabolism , Gene Expression , Gene Expression Regulation/drug effects , Genes, Reporter , Humans , Mice , Microscopy, Confocal , Signal Transduction/drug effects , Tumor Suppressor Protein p53/metabolism , Xenograft Model Antitumor Assays
11.
Pathology ; 49(6): 618-626, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28818465

ABSTRACT

Girdin is an actin-binding Akt substrate that is an integral component of the PI3K/Akt signalling pathway. However, the clinicopathological significance of Girdin expression in breast cancer has not been clarified. The purpose of this study was to characterise the clinicopathological implication of Girdin expression in breast cancer. Immunohistochemistry-based protein expression analyses of 892 human breast cancer tissues showed that Girdin was expressed in 289 (32.4%) cases. Girdin expression was significantly associated with larger tumour size, frequent lymph node invasion, advanced cancer stage, and expression of oestrogen and progesterone receptors. Patients who had breast cancer with Girdin expression experienced significantly poorer overall survival (OS) (p=0.021) and disease-free survival (DFS) (p=0.002) than those without Girdin expression. In subtype analyses, Girdin expression was significantly correlated with poorer OS and DFS in HER2 subtype (p=0.004 and p=0.034, respectively). In triple negative breast cancer (TNBC) subtype, Girdin expression was significantly correlated with poorer DFS (p=0.035), and there was a trend toward poorer OS (p=0.060) in TNBC patients with Girdin expression. Multivariate analysis revealed that Girdin expression was an independent prognostic factor for OS (p=0.022) and DFS (p=0.030) in patients with breast cancer. In HER2 subtype under multivariate analysis, Girdin expression retained its role as an independent prognostic predictor for worse OS (p=0.023), and there was a trend toward poorer DFS (p=0.086) in patients with HER2 subtype expressing Girdin. Girdin expression may serve as a useful prognostic factor for invasive breast cancer, especially for the HER2 subtype.


Subject(s)
Breast Neoplasms/diagnosis , Microfilament Proteins/metabolism , Receptor, ErbB-2/metabolism , Triple Negative Breast Neoplasms/diagnosis , Vesicular Transport Proteins/metabolism , Adult , Aged , Aged, 80 and over , Breast Neoplasms/metabolism , Breast Neoplasms/pathology , Disease-Free Survival , Female , Humans , Immunohistochemistry , Middle Aged , Neoplasm Staging , Prognosis , Signal Transduction , Triple Negative Breast Neoplasms/metabolism , Triple Negative Breast Neoplasms/pathology , Young Adult
12.
Sci Rep ; 7(1): 1573, 2017 05 08.
Article in English | MEDLINE | ID: mdl-28484281

ABSTRACT

Ulcerative colitis is a multi-factorial disease involving a dysregulated immune response. Disruptions to the intestinal epithelial barrier and translocation of bacteria, resulting in inflammation, are common in colitis. The mechanisms underlying epithelial barrier dysfunction or regulation of tight junction proteins during disease progression of colitis have not been clearly elucidated. Increase in phospholipase D (PLD) activity is associated with disease severity in colitis animal models. However, the role of PLD2 in the maintenance of intestinal barrier integrity remains elusive. We have generated intestinal-specific Pld2 knockout mice (Pld2 IEC-KO) to investigate the mechanism of intestinal epithelial PLD2 in colitis. We show that the knockout of Pld2 confers protection against dextran sodium sulphate (DSS)-induced colitis in mice. Treatment with DSS induced the expression of PLD2 and downregulated occludin in colon epithelial cells. PLD2 was shown to mediate phosphorylation of occludin and induce its proteasomal degradation in a c-Src kinase-dependent pathway. Additionally, we have shown that treatment with an inhibitor of PLD2 can rescue mice from DSS-induced colitis. To our knowledge, this is the first report showing that PLD2 is pivotal in the regulation of the integrity of epithelial tight junctions and occludin turn over, thereby implicating it in the pathogenesis of colitis.


Subject(s)
Colitis/metabolism , Colitis/pathology , Epithelial Cells/metabolism , Gene Deletion , Intestines/pathology , Occludin/metabolism , Phospholipase D/genetics , Animals , Colitis/chemically induced , Dextran Sulfate , Dinitrofluorobenzene/analogs & derivatives , Down-Regulation , HT29 Cells , Humans , Mice, Inbred C57BL , Mice, Knockout , Models, Biological , Organ Specificity , Phospholipase D/antagonists & inhibitors , Phospholipase D/metabolism , Phosphorylation , Proteasome Endopeptidase Complex/metabolism , Proteolysis , src-Family Kinases/metabolism
13.
Breast Cancer Res Treat ; 164(1): 41-56, 2017 Jul.
Article in English | MEDLINE | ID: mdl-28409241

ABSTRACT

PURPOSE: More accurate prediction of patient outcome based on molecular subtype is required to identify patients who will benefit from specific treatments. METHODS: We selected novel 16 candidate prognostic genes, including 10 proliferation-related genes (p-genes) and 6 immune response-related genes (i-genes), from the gene list identified in our previous study. We then analyzed the association between their expression, measured by quantitative real-time reverse transcription-PCR in formalin-fixed, paraffin-embedded tissues, and clinical outcome in 819 breast cancer patients according to molecular subtype. RESULTS: The prognostic significance of clinical and gene variables varied according to the molecular subtype. Univariate analysis showed that positive lymph node status was significantly correlated with the increased risk of distant metastasis in all subtypes except the hormone receptor-negative, HER2-positive (HR-/HER2+) subtype. Most p-genes were significantly associated with poor prognosis in patients with the HR+/HER2- subtype, whereas i-genes correlated with a favorable outcome in patients with HR-/HER2+ breast cancer. In HR-/HER2+ breast cancer, four genes (three i-genes BTN3A2, CD2, and TRBC1 and the p-gene MMP11) were significantly associated with distant metastasis-free survival (DMFS). A new prognostic model for HR-/HER2+ breast cancer based on the expression of MMP11 and CD2 was developed and the DMFS for patients in the high-risk group according to our model was significantly lower than that for those in the low-risk group. Multivariate analyses revealed that our risk score is an independent prognostic factor for DMFS. Moreover, C-index showed that our risk score has a superior prognostic performance to traditional clinicopathological factors. CONCLUSIONS: Our new prognostic model for HR-/HER2+ breast cancer provides more accurate information on the risk of distant metastasis than traditional clinical prognostic factors and may be used to identify patients with a good prognosis in this aggressive subtype of breast cancer.


Subject(s)
Breast Neoplasms/genetics , CD2 Antigens/genetics , Matrix Metalloproteinase 11/genetics , Prognosis , Receptor, ErbB-2/genetics , Adult , Aged , Aged, 80 and over , Biomarkers, Tumor/genetics , Breast Neoplasms/immunology , Breast Neoplasms/pathology , Cell Proliferation/genetics , Disease-Free Survival , Female , Gene Expression Regulation, Neoplastic , Humans , Immunity, Innate/genetics , Lymphatic Metastasis/genetics , Lymphatic Metastasis/pathology , Middle Aged
14.
Sci Rep ; 7: 45554, 2017 03 28.
Article in English | MEDLINE | ID: mdl-28350001

ABSTRACT

To make an optimal treatment decision for early stage breast cancer, it is important to identify risk of recurrence. Here, we developed and validated a new prognostic model for predicting the risk of distant metastasis in patients with pN0-N1, hormone receptor-positive, HER2-negative (HR+/HER2-) breast cancer treated with hormone therapy alone. RNA was extracted from formalin-fixed, paraffin-embedded tumor tissues and gene expression was measured by quantitative real-time reverse transcription-PCR. The relative expression of six novel prognostic genes was combined with two clinical variables (nodal status and tumor size) to calculate a risk score (BCT score). In the validation cohort treated with hormone therapy alone, the 10 year rate of distant metastasis in the high-risk group (26.3%) according to BCT score was significantly higher than that in the low-risk group (3.8%) (P < 0.001). Multivariate analysis adjusted for clinical variables revealed that BCT score is an independent predictor of distant metastasis. Moreover, the C-index estimate revealed that BCT score has a prognostic power superior to that of prognostic models based on clinicopathological parameters. The BCT score outperforms prognostic models based on traditional clinicopathological factors and predicts the risk of distant metastasis in patients with HR+/HER2- early breast cancer.


Subject(s)
Breast Neoplasms/pathology , Breast Neoplasms/secondary , Decision Support Techniques , Neoplasm Metastasis/diagnostic imaging , Pathology, Molecular/methods , Receptor, ErbB-2/analysis , Transcription Factors/analysis , Female , Gene Expression Profiling , Humans , Middle Aged , Prognosis , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction
15.
Oncotarget ; 7(35): 56933-56943, 2016 Aug 30.
Article in English | MEDLINE | ID: mdl-27486766

ABSTRACT

Inactivating mutations in ARID1A are found in a broad spectrum of cancer types, with the highest frequency in gynecologic cancers. However, therapeutic strategies targeting ARID1A-mutant cancer cells remain limited. In this study, we aimed to identify drugs sensitivities in ARID1A-mutant cancer cell lines. By analyzing the Genomics of Drug Sensitivity in Cancer database, we found that ARID1A-mutant cancer cell lines were more sensitive to treatment with the reactive oxygen species (ROS)-inducing agent elesclomol. In a panel of 14 gynecologic cancer cell lines, treatment with elesclomol inhibited growth and induced apoptosis more potently in ARID1A-mutant cells. Knockdown of ARID1A in RMG1 and OVCA432 ovarian cancer cells resulted in increased sensitivity to elesclomol, whereas restoration of ARID1A expression in TOV21G ovarian cancer cells resulted in increased resistance to elesclomol. Furthermore, we found that knockdown of ARID1A expression resulted in increased intracellular ROS levels. In ovarian clear cell carcinoma patient samples, low expression of ARID1A correlated with high expression of 8-hydroxyguanosine, a marker for oxidative stress. In summary, we demonstrate for the first time that loss of ARID1A leads to accumulation of ROS and suggest that elesclomol may be used to target ARID1A-mutant gynecologic cancer cells.


Subject(s)
Gene Expression Regulation, Neoplastic , Hydrazines/pharmacology , Nuclear Proteins/genetics , Ovarian Neoplasms/genetics , Reactive Oxygen Species/metabolism , Transcription Factors/genetics , Adenocarcinoma, Clear Cell/drug therapy , Adenocarcinoma, Clear Cell/genetics , Apoptosis , Cell Line, Tumor , Cell Proliferation , DNA-Binding Proteins , Female , Genomics , Humans , Inhibitory Concentration 50 , Mutation , Ovarian Neoplasms/drug therapy , Ovarian Neoplasms/metabolism , Oxidative Stress , RNA, Small Interfering/metabolism
16.
Oncotarget ; 7(17): 24141-53, 2016 Apr 26.
Article in English | MEDLINE | ID: mdl-27007161

ABSTRACT

Malignant pheochromocytoma/paraganglioma (PCC/PGL) is defined by the presence of metastases at non-chromaffin sites, which makes it difficult to prospectively diagnose malignancy. Here, we performed array CGH (aCGH) and paired gene expression profiling of fresh, frozen PCC/PGL samples (n = 12), including three malignant tumors, to identify genes that distinguish benign from malignant tumors. Most PCC/PGL cases showed few copy number aberrations, regardless of malignancy status, but mRNA analysis revealed that 390 genes were differentially expressed in benign and malignant tumors. Expression of the enzyme, phenylethanolamine N-methyltransferase (PNMT), which catalyzes the methylation of norepinephrine to epinephrine, was significantly lower in malignant PCC/PGL as compared to benign samples. In 62 additional samples, we confirmed that PNMT mRNA and protein levels were decreased in malignant PCC/PGL using quantitative real-time polymerase chain reaction and immunohistochemistry. The present study demonstrates that PNMT downregulation correlates with malignancy in PCC/PGL and identifies PNMT as one of the most differentially expressed genes between malignant and benign tumors.


Subject(s)
Adrenal Gland Neoplasms/pathology , Biomarkers, Tumor/metabolism , Neoplasm Recurrence, Local/pathology , Paraganglioma/pathology , Phenylethanolamine N-Methyltransferase/metabolism , Pheochromocytoma/pathology , Adrenal Gland Neoplasms/enzymology , Adult , Aged , Down-Regulation , Female , Follow-Up Studies , Humans , Male , Middle Aged , Neoplasm Recurrence, Local/enzymology , Paraganglioma/enzymology , Pheochromocytoma/enzymology , Prognosis , Survival Rate
17.
Int Immunopharmacol ; 31: 223-32, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26771170

ABSTRACT

Isoliquiritigenin (isoLQ), a chalcone found in licorice, has shown a variety of biological activity including anti-inflammatory and antioxidative effects, and the distribution of isoLQ in gastrointestinal tract was higher than any other tissues. Thus, we evaluated whether or not isoLQ attenuated the dextran sulfate sodium (DSS)-induced colitis by observing the physiological changes (body weight loss, diarrhea, bleeding stool, overall disease activity index (DAI) scores, colon length), histopathological analysis and myeloperoxidase (MPO) activities of esophagus and colon. Also, the MAPK pathways including phosphorylation of ERK1/2, p38, and AKT, and the activation of NK-κB were evaluated in colon tissue. Interestingly, the reduction of body weight and colon length, increase of diarrhea, bloody stool, DAI scores and MPO activity, and histologic disturbances in DSS-induced colitis were recovered by isoLQ treatment. Also, isoLQ treatment suppressed the phosphorylation of ERK1/2 and p38, and the activation of NK-κB compared to those in DSS-induced colitis mice. In addition, the distributions of isoLQ in colon were relatively higher in DSS-induced colitis models. All of these results suggested that isoLQ has potential activity to ameliorate the DSS-induced colitis through the inhibition of MAPK pathway.


Subject(s)
Anti-Inflammatory Agents/administration & dosage , Chalcones/administration & dosage , Colitis/drug therapy , Colon/drug effects , Glycyrrhiza/immunology , Animals , Anti-Inflammatory Agents/therapeutic use , Chalcones/therapeutic use , Colitis/chemically induced , Colon/physiology , Dextran Sulfate , Disease Progression , Extracellular Signal-Regulated MAP Kinases/metabolism , Male , Mice , Mice, Inbred ICR , NF-kappa B/metabolism , Peroxidase/metabolism , Signal Transduction/drug effects
18.
PLoS One ; 10(10): e0139112, 2015.
Article in English | MEDLINE | ID: mdl-26444008

ABSTRACT

CD24 is associated with unfavourable prognoses in various cancers, but the prevalence of CD24 expression and its influence on clinical outcome in subtypes of breast cancers remain unclear. CD24 expression was analyzed by immunohistochemistry in 747 breast cancer tissues, and DNA methylation and histone modification status in the promoter region of CD24 were assessed using bisulfite sequencing and chromatin immunoprecipitation assay. 213 (28.5%) samples exhibited high CD24 expression in the membrane and/or cytoplasm of breast cancer cells, and CD24 overexpression was significantly correlated with the presence of lymph node metastasis and more advanced pathological stage. Patients with CD24-high tumours had significantly shorter patient survival than those with CD24-low tumours. Importantly, multivariate analysis that included tumour size, lymph node metastasis and chemotherapy demonstrated that high CD24 expression is independently associated with poorer survival in luminal A and triple-negative breast cancer (TNBC) subtypes. Furthermore, CD24 gene expression was associated with histone acetylation independent of DNA methylation, suggesting its epigenetic regulation in breast cancer. Our results suggest that CD24 overexpression is an independent unfavourable prognostic factor in breast cancer, especially for luminal A and TNBC subtypes, and CD24 may be a promising therapeutic target for specific subtypes of breast cancer.


Subject(s)
CD24 Antigen/genetics , Triple Negative Breast Neoplasms/genetics , Triple Negative Breast Neoplasms/pathology , Adult , Aged , Aged, 80 and over , Biomarkers, Tumor/genetics , Cell Line, Tumor , DNA Methylation/genetics , Epigenesis, Genetic/genetics , Female , Humans , Immunohistochemistry/methods , Lymphatic Metastasis/genetics , Lymphatic Metastasis/pathology , Middle Aged , Prognosis , Receptor, ErbB-2/genetics , Young Adult
19.
Int J Mol Sci ; 16(6): 12243-60, 2015 May 29.
Article in English | MEDLINE | ID: mdl-26035754

ABSTRACT

The functional inactivation of TP53 and Rb tumor suppressor proteins by the HPV-derived E6 and E7 oncoproteins is likely an important step in cervical carcinogenesis. We have previously shown siRNA technology to selectively silence both E6/E7 oncogenes and demonstrated that the synthetic siRNAs could specifically block its expression in HPV-positive cervical cancer cells. Herein, we investigated the potentiality of E6/E7 siRNA candidates as radiosensitizers of radiotherapy for the human cervical carcinomas. HeLa and SiHa cells were transfected with HPV E6/E7 siRNA; the combined cytotoxic effect of E6/E7 siRNA and radiation was assessed by using the cell viability assay, flow cytometric analysis and the senescence-associated ß-galactosidase (SA-ß-Gal) assay. In addition, we also investigated the effect of combined therapy with irradiation and E6/E7 siRNA intravenous injection in an in vivo xenograft model. Combination therapy with siRNA and irradiation efficiently retarded tumor growth in established tumors of human cervical cancer cell xenografted mice. In addition, the chemically-modified HPV16 and 18 E6/E7 pooled siRNA in combination with irradiation strongly inhibited the growth of cervical cancer cells. Our results indicated that simultaneous inhibition of HPV E6/E7 oncogene expression with radiotherapy can promote potent antitumor activity and radiosensitizing activity in human cervical carcinomas.


Subject(s)
Oncogene Proteins, Viral/antagonists & inhibitors , Papillomavirus Infections/therapy , RNA, Small Interfering/administration & dosage , Radiation-Sensitizing Agents/administration & dosage , Uterine Cervical Neoplasms/therapy , Animals , Cell Proliferation/drug effects , Cell Survival/drug effects , Cell Survival/radiation effects , Combined Modality Therapy , Female , HeLa Cells , Human papillomavirus 16/drug effects , Human papillomavirus 16/metabolism , Human papillomavirus 18/drug effects , Human papillomavirus 18/metabolism , Humans , Mice , Papillomavirus E7 Proteins/antagonists & inhibitors , RNA, Small Interfering/pharmacology , Radiation-Sensitizing Agents/pharmacology , Uterine Cervical Neoplasms/virology , Xenograft Model Antitumor Assays
20.
Mol Cancer Res ; 12(12): 1779-95, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25061104

ABSTRACT

UNLABELLED: SMAD4 has been suggested to inhibit the activity of the WNT/ß-catenin signaling pathway in cancer. However, the mechanism by which SMAD4 antagonizes WNT/ß-catenin signaling in cancer remains largely unknown. Aurora A kinase (AURKA), which is frequently overexpressed in cancer, increases the transcriptional activity of ß-catenin/T-cell factor (TCF) complex by stabilizing ß-catenin through the inhibition of GSK-3ß. Here, SMAD4 modulated AURKA in a TGFß-independent manner. Overexpression of SMAD4 significantly suppressed AURKA function, including colony formation, migration, and invasion of cell lines. In addition, SMAD4 bound to AURKA induced degradation of AURKA by the proteasome. A luciferase activity assay revealed that the transcriptional activity of the ß-catenin/TCF complex was elevated by AURKA, but decreased by SMAD4 overexpression. Moreover, target gene analysis showed that SMAD4 abrogated the AURKA-mediated increase of ß-catenin target genes. However, this inhibitory effect of SMAD4 was abolished by overexpression of AURKA or silencing of AURKA in SMAD4-overexpressed cells. Meanwhile, the SMAD4-mediated repression of AURKA and ß-catenin was independent of TGFß signaling because blockage of TGFßR1 or restoration of TGFß signaling did not prevent suppression of AURKA and ß-catenin signaling by SMAD4. These results indicate that the tumor-suppressive function of SMAD4 is mediated by downregulation of ß-catenin transcriptional activity via AURKA degradation in a TGFß-independent manner. IMPLICATIONS: SMAD4 interacts with AURKA and antagonizes its tumor-promoting potential, thus demonstrating a novel mechanism of tumor suppression.


Subject(s)
Aurora Kinase A/metabolism , Neoplasms/pathology , Smad4 Protein/metabolism , Transforming Growth Factor beta/metabolism , beta Catenin/metabolism , Animals , Aurora Kinase A/genetics , Cell Line, Tumor , Cell Movement , HeLa Cells , Humans , Mice , Mutation , NIH 3T3 Cells , Neoplasm Metastasis , Neoplasms/genetics , Neoplasms/metabolism , Proteasome Endopeptidase Complex/metabolism , Signal Transduction , Smad4 Protein/genetics , beta Catenin/genetics
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