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1.
Clin Toxicol (Phila) ; 52(5): 561-5, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24779864

ABSTRACT

CONTEXT: A new group of novel psychoactive substance, the N-methoxybenzyl (NBOMe) derivatives of substituted phenethylamine, has recently emerged on the drug market, among which 25I-NBOMe and 25B-NBOMe have previously been implicated in clinical intoxications and fatalities. We report two cases of acute intoxication associated with these substances. CASE DETAILS: Two male patients (17 and 31 years of age) had ingested drugs labelled as 'NBOMe' or 'Holland film' and developed confusion, agitation, hypertension, tachycardia, hyperthermia, sweating and dilated pupils. Other features included convulsion, rhabdomyolysis and deranged liver function. The patients required benzodiazepines and other drugs for the control of symptoms. Urine samples from both patients were analysed using liquid-chromatography tandem mass spectrometry (LC-MS/MS) following glucuronidase digestion and solid-phase extraction. Identification was based upon comparison of the retention time and enhanced product ion scan with reference standards. In both urine samples, 25B-NBOMe was detected. Additionally, 25C-NBOMe was identified in one of the urine samples. DISCUSSION: The NBOMe compounds are highly potent 5HT2A receptor agonists and are also agonists at alpha-adrenergic receptors, which likely account for their serotonergic and sympathomimetic symptoms. The clinical testing of NBOMe drugs is not commonly available. Clinicians as well as laboratory staff play an important role in facilitating the detection of this group of potentially dangerous emerging drugs.


Subject(s)
Hallucinogens/poisoning , Illicit Drugs/poisoning , Phenethylamines/poisoning , Substance Abuse Detection/methods , Adolescent , Adrenergic alpha-Agonists/chemistry , Adrenergic alpha-Agonists/pharmacology , Adrenergic alpha-Agonists/poisoning , Adult , Chromatography, Liquid/methods , Hallucinogens/chemistry , Hallucinogens/pharmacology , Humans , Illicit Drugs/chemistry , Illicit Drugs/pharmacology , Male , Phenethylamines/chemistry , Phenethylamines/pharmacology , Serotonin 5-HT2 Receptor Agonists/chemistry , Serotonin 5-HT2 Receptor Agonists/pharmacology , Serotonin 5-HT2 Receptor Agonists/poisoning , Severity of Illness Index , Solid Phase Extraction/methods , Tandem Mass Spectrometry/methods
2.
Infect Immun ; 71(4): 1706-18, 2003 Apr.
Article in English | MEDLINE | ID: mdl-12654783

ABSTRACT

Anaplasma phagocytophilum is the causative agent of an emerging tick-borne zoonosis in the United States and Europe. The organism causes a febrile illness accompanied by other nonspecific symptoms and can be fatal, especially if treatment is delayed. Persistence of A. phagocytophilum within mammalian reservoir hosts is important for ensuring continued disease transmission. In the related organism Anaplasma marginale, persistence is associated with antigenic variation of the immunoprotective outer membrane protein MSP2. Extensive diversity of MSP2 is achieved by combinatorial gene conversion of a genomic expression site by truncated pseudogenes. The major outer membrane protein of A. phagocytophilum, MSP2(P44), is homologous to MSP2 of A. marginale, has a similar organization of conserved and variable regions, and is also encoded by a multigene family containing some truncated gene copies. This suggests that the two organisms could use similar mechanisms to generate diversity in outer membrane proteins from their small genomes. We define here a genomic expression site for MSP2(P44) in A. phagocytophilum. As in A. marginale, the msp2(p44) gene in this expression site is polymorphic in all populations of organisms we have examined, whether organisms are obtained from in vitro culture in human HL-60 cells, from culture in the tick cell line ISE6, or from infected human blood. Changes in culture conditions were found to favor the growth and predominance of certain msp2(p44) variants. Insertions, deletions, and substitutions in the region of the genomic expression site encoding the central hypervariable region matched sequence polymorphisms in msp2(p44) mRNA. These data suggest that, similarly to A. marginale, A. phagocytophilum uses combinatorial mechanisms to generate a large array of outer membrane protein variants. Such gene polymorphism has profound implications for the design of vaccines, diagnostic tests, and therapy.


Subject(s)
Amino Acid Sequence , Anaplasma phagocytophilum/genetics , Antigens, Bacterial , Bacterial Outer Membrane Proteins/genetics , Bacterial Outer Membrane Proteins/metabolism , Genetic Variation , Anaplasma phagocytophilum/metabolism , Animals , Bacterial Outer Membrane Proteins/chemistry , Base Sequence , Cell Line , Ehrlichiosis/microbiology , Genome, Bacterial , HL-60 Cells , Humans , Molecular Sequence Data , RNA, Messenger/genetics , RNA, Messenger/metabolism , Sequence Analysis, DNA , Ticks/cytology , Ticks/microbiology
3.
J Immunol ; 166(3): 1855-62, 2001 Feb 01.
Article in English | MEDLINE | ID: mdl-11160232

ABSTRACT

Previous studies of Ehrlichia chaffeensis infection in the mouse have demonstrated that passive transfer of polyclonal Abs from resistant immunocompetent mice to susceptible SCID mice ameliorated infection and disease, even when Abs were administered during established infection. To identify particular Abs that could mediate bacterial clearance in vivo, E. chaffeensis-specific mAbs were generated and administered to infected SCID mice. Bacterial infection in the livers was significantly lowered after administration of either of two Abs of different isotypes (IgG2a and IgG3). Moreover, repeated administration of one Ab (Ec56.5; IgG2a) rescued mice from an otherwise lethal infection for at least 5 wk. Both protective Abs recognized the E. chaffeensis major outer membrane protein (OMP)-1g. Further studies revealed that both Abs recognized closely related epitopes within the amino terminus of the first hypervariable region of OMP-1g. Analyses of human sera showed that E. chaffeensis-infected patients also generated serological responses to OMP-1g hypervariable region 1, indicating that humans and mice recognize identical or closely related epitopes. These studies demonstrate that OMP-specific mAbs can mediate bacterial elimination in SCID mice, and indicate that Abs, in the absence of cell-mediated immunity, can play a significant role in host defense during infection by this obligate intracellular bacterium.


Subject(s)
Antibodies, Monoclonal/administration & dosage , Antibody Specificity , Bacterial Outer Membrane Proteins/immunology , Ehrlichia chaffeensis/immunology , Ehrlichiosis/mortality , Ehrlichiosis/prevention & control , Intracellular Fluid/immunology , Intracellular Fluid/microbiology , Amino Acid Sequence , Animals , Antibodies, Bacterial/biosynthesis , Antibodies, Monoclonal/metabolism , Antigen-Antibody Reactions , Bacterial Outer Membrane Proteins/metabolism , Cell Line , Dogs , Ehrlichia chaffeensis/pathogenicity , Ehrlichiosis/immunology , Ehrlichiosis/microbiology , Epitopes/metabolism , Humans , Immunity, Innate , Injections, Intraperitoneal , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Mice, SCID , Molecular Sequence Data
4.
Clin Infect Dis ; 31(5): 1288-91, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11073767

ABSTRACT

Neurologic manifestations of human ehrlichiosis are unusual and have been described almost exclusively in human monocytic ehrlichiosis associated with Ehrlichia chaffeensis. We report here a case of a previously healthy 42-year-old woman who developed bilateral facial nerve palsies in association with infection by the agent of human granulocytic ehrlichiosis (aoHGE). The diagnosis was made by specific polymerase chain reaction amplification of aoHGE sequences from samples of the patient's blood and cerebrospinal fluid (CSF), as well as propagation of aoHGE in culture of HL60 cells inoculated with the patient's CSF. To our knowledge, this is the first report directly demonstrating the presence of aoHGE in CSF, and it underscores the importance of considering HGE in patients presenting with a nonspecific febrile illness and unexplained neurologic manifestations. HGE should also be considered in the differential diagnosis of bilateral facial palsy-a rare occurrence.


Subject(s)
Ehrlichia chaffeensis , Ehrlichiosis/complications , Facial Paralysis/etiology , Adult , DNA, Bacterial/genetics , Ehrlichia chaffeensis/genetics , Ehrlichia chaffeensis/growth & development , Ehrlichiosis/microbiology , Female , Granulocytes/microbiology , HL-60 Cells , Humans , Polymerase Chain Reaction
5.
Transfusion ; 40(3): 285-9, 2000 Mar.
Article in English | MEDLINE | ID: mdl-10738027

ABSTRACT

BACKGROUND: Babesiosis can be life-threatening in immunocompromised individuals. Although the disease is usually transmitted by tick bite, more than 20 cases have been reported of infection transmitted by transfusion of blood or blood components obtained from apparently healthy donors from endemic areas in the United States. This report describes several recent cases of transfusion-transmitted babesiosis in New York State. STUDY DESIGN AND METHODS: Transfusion-associated incidents of babesiosis infection were identified and investigated. Seroprevalence of babesiosis in healthy blood donors in a highly endemic area was ascertained. RESULTS: In three incidents, babesiosis was diagnosed in five of eight patients given infected blood: two premature infants, an elderly patient with gastrointestinal bleeding, and two patients with thalassemia. Seroprevalence in blood donors on Shelter Island (Suffolk County, eastern Long Island), a highly endemic area, was 4.3 percent in May 1998. CONCLUSIONS: Infected donors lived in endemic areas and were asymptomatic with no history of tick bite. Blood collected in January 1997 from one donor was infectious. Those transfusion recipients who were infected were neonatal, elderly, or chronically transfused patients. Babesiosis should be included in the differential diagnosis of febrile illness in immunocompromised recipients of blood transfusion, particularly in the Northeastern United States.


Subject(s)
Babesiosis/transmission , Transfusion Reaction , Adult , Aged , Animals , Babesiosis/blood , Babesiosis/epidemiology , Blood Donors , Humans , Immunoglobulin M/blood , Infant , Infant, Newborn , Infant, Premature , Male , New York/epidemiology , Polymerase Chain Reaction
6.
Infect Immun ; 68(4): 2187-95, 2000 Apr.
Article in English | MEDLINE | ID: mdl-10722619

ABSTRACT

It is generally accepted that cellular, but not humoral immunity, plays an important role in host defense against intracellular bacteria. However, studies of some of these pathogens have provided evidence that antibodies can provide immunity if present during the initiation of infection. Here, we examined immunity against infection by Ehrlichia chaffeensis, an obligate intracellular bacterium that causes human monocytic ehrlichiosis. Studies with mice have demonstrated that immunocompetent strains are resistant to persistent infection but that SCID mice become persistently and fatally infected. Transfer of immune serum or antibodies obtained from immunocompetent C57BL/6 mice to C57BL/6 scid mice provided significant although transient protection from infection. Bacterial clearance was observed when administration occurred at the time of inoculation or well after infection was established. The effect was dose dependent, occurred within 2 days, and persisted for as long as 2 weeks. Weekly serum administration prolonged the survival of susceptible mice. Although cellular immunity is required for complete bacterial clearance, the data show that antibodies can play a significant role in the elimination of this obligate intracellular bacterium during active infection and thus challenge the paradigm that humoral responses are unimportant for immunity to such organisms.


Subject(s)
Antibodies, Bacterial/immunology , Ehrlichia chaffeensis/immunology , Ehrlichia chaffeensis/metabolism , Animals , Antigens, Bacterial/immunology , B-Lymphocytes/immunology , Blood/immunology , Blotting, Western , Cell Line , Dogs , Fluorescent Antibody Technique , Immunity , Immunization, Passive , Liver/immunology , Liver/microbiology , Mice , Mice, Inbred C57BL , Mice, SCID , Receptors, Antigen, T-Cell/immunology , Spleen/immunology , Spleen/microbiology , T-Lymphocytes/immunology , Time Factors
7.
Vet Parasitol ; 78(2): 137-45, 1998 Jul 31.
Article in English | MEDLINE | ID: mdl-9735918

ABSTRACT

Human blood collected from two patients from Westchester County, New York with human granulocytic ehrlichia (HGE) infection was inoculated into two ponies. Inoculated ponies developed clinical signs similar to a previous report (Madigan et al., 1995). Histopathological changes involved follicular hyperplasia of lymphoid tissues. HGE DNA was detected by PCR in muscle, fascia, peritoneum, and adrenal gland after the ponies produced a high level of antibodies to HGE. We suggest that HGE may reside in poorly vascularized connective tissues, where the antibodies may have some difficulties to penetrate, resulting in persistent infection. Since HGE and E. equi cause very similar diseases in both humans and horses, they may be the same organism with minor genetic differences.


Subject(s)
Ehrlichia/physiology , Ehrlichiosis/veterinary , Horse Diseases/microbiology , Adrenal Glands/microbiology , Adrenal Glands/pathology , Aged , Animals , DNA, Bacterial/analysis , DNA, Bacterial/blood , Ehrlichia/classification , Ehrlichia/genetics , Ehrlichiosis/microbiology , Ehrlichiosis/pathology , Fascia/microbiology , Fascia/pathology , Horse Diseases/pathology , Horses , Humans , Joints/microbiology , Joints/pathology , Liver/pathology , Lung/microbiology , Lung/pathology , Lymph Nodes/microbiology , Lymph Nodes/pathology , Lymphatic System/pathology , Male , Middle Aged , Muscle, Skeletal/microbiology , Muscle, Skeletal/pathology , Peritoneum/microbiology , Peritoneum/pathology , Polymerase Chain Reaction/veterinary , Specific Pathogen-Free Organisms , Spleen/pathology
8.
Infect Immun ; 66(8): 3892-9, 1998 Aug.
Article in English | MEDLINE | ID: mdl-9673277

ABSTRACT

To determine the basis of susceptibility and resistance to human monocytic ehrlichiosis (HME), immunocompetent and immunocompromised mice were infected with Ehrlichia chaffeensis and bacterial loads were measured by PCR and by immunohistochemistry. Immunocompetent (C. B-17 and C57BL/6) mice cleared the bacteria within 10 days, but immunocompromised SCID and SCID/BEIGE mice developed persistent infection in the spleen, liver, peritoneal cavity, brain, lung, and bone marrow and became moribund within 24 days. Both immunocompromised strains lack T and B lymphocytes, but the SCID/BEIGE strain is also deficient in natural killer (NK) cell function. During advanced stages of disease, the infections were associated with wasting, splenomegaly, lymphadenopathy, liver granulomas and necroses, intravascular coagulation, and granulomatous inflammation. Histochemical and immunohistochemical localization studies confirmed the presence of bacteria in tissues, and viable bacteria were cultured from infected animals. The data reveal that T and/or B cells play an essential role during resistance of immunocompetent mice to infection with E. chaffeensis and demonstrate the utility of immunocompromised mice as an experimental model for the study of HME.


Subject(s)
Ehrlichia chaffeensis/physiology , Ehrlichiosis/physiopathology , Animals , Disease Models, Animal , Drug Administration Routes , Ehrlichia chaffeensis/growth & development , Ehrlichiosis/microbiology , Ehrlichiosis/pathology , Female , Humans , Immunocompromised Host , Mice , Mice, Inbred C57BL , Mice, SCID , Splenomegaly , Weight Loss
9.
Mol Cell Probes ; 12(2): 93-9, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9633044

ABSTRACT

The potential of fatal outcome for patients afflicted with human ehrlichioses (HME and HGE) necessitates fast and accurate detection of the aetiologic agents and timely antibiotic treatment. A polymerase chain reaction (PCR)-based protocol is described that can detect as little as 10 copies of ehrlichial 16S rDNA and as few as 0.3 HGE-infected neutrophils. The method employs DNAzol for rapid DNA extraction from unfractionated whole blood in less than 1 h. For DNA amplification, highly specific oligonucleotide primers are designed that efficiently detect and distinguish between Ehrlichia chaffeensis and the HGE agent. These primers do not prime DNA extracted from closely related ehrlichial and rickettsial species. Although total DNA extracted from human blood contains nucleic acids that can be non-specifically amplified at moderate to high MgCI2 concentrations, such non-specific priming of non-ehrlichial DNA can be completely eliminated by lowering the MgCI2 concentration to 1 mM. Thus, this PCR-based procedure can detect and differentiate HGE and HME with speed, simplicity, specificity and sensitivity.


Subject(s)
Ehrlichia chaffeensis/isolation & purification , Ehrlichia/isolation & purification , Ehrlichiosis/blood , Ehrlichiosis/microbiology , Granulocytes/microbiology , Monocytes/microbiology , Polymerase Chain Reaction/methods , Animals , DNA Primers/chemical synthesis , DNA Probes/chemical synthesis , DNA, Bacterial/genetics , Ehrlichia/genetics , Ehrlichia chaffeensis/genetics , Ehrlichiosis/etiology , Horses , Humans , Magnesium/pharmacology , Nucleic Acid Hybridization , RNA, Ribosomal, 16S/genetics , Sensitivity and Specificity
10.
Nucleic Acids Res ; 19(24): 6863-9, 1991 Dec 25.
Article in English | MEDLINE | ID: mdl-1762916

ABSTRACT

The T4 phage td intron-encoded endonuclease (I-Tev I) cleaves the intron-deleted td gene (td delta I) 23 nucleotides upstream of the intron insertion site on the noncoding strand and 25 nucleotides upstream of this site on the coding strand, to generate a 2-base hydroxyl overhang in the 3' end of each DNA strand. I-Tev I-157, a truncated form in which slightly more than one third (88 residues) of the endonuclease is deleted, was purified to homogeneity and shown to possess endonuclease activity similar to that of I-TEV I, the full-length enzyme (245 residues). The minimal length of the td delta I gene that was cleaved by I-Tev I and I-Tev I-157 has been determined to be exactly 39 basepairs, from -27 (upstream in exon1) to +12 (downstream in exon2) relative to the intron insertion site. Similar to the full-length endonuclease, I-Tev I-157 cuts the intronless thymidylate synthase genes from such diverse organisms as Escherichia coli, Lactobacillus casei and the human. The position and nature of the in vitro endonucleolytic cut in these genes are homologous to those in td delta I. Point mutational analysis of the td delta I substrate based on the deduced consensus nucleotide sequence has revealed a very low degree of specificity on either side of the cleavage site, for both the full-length and truncated I-TEV I.


Subject(s)
Endodeoxyribonucleases/metabolism , T-Phages/enzymology , Thymidylate Synthase/genetics , Base Sequence , Consensus Sequence , DNA Mutational Analysis , DNA, Viral/genetics , DNA, Viral/metabolism , Endodeoxyribonucleases/genetics , Endodeoxyribonucleases/isolation & purification , Introns/genetics , Molecular Sequence Data , Nucleic Acid Heteroduplexes/metabolism , Restriction Mapping , Substrate Specificity , T-Phages/genetics
11.
Mol Microbiol ; 4(6): 867-71, 1990 Jun.
Article in English | MEDLINE | ID: mdl-2215214

ABSTRACT

Group I introns are present in at least three bacteriophage T4 genes: td, nrdB and sunY. The transcription products of these three genes have similar intron consensus regions and secondary structures, which render them capable of guanosine-mediated in vitro autocatalytic splicing reactions. Moreover, it has been shown that the 245-amino-acid protein encoded in the td intron expresses an endonuclease that cleaves near the joining site for the two exons in the intron-deleted thymidylate synthase gene. The intron-containing td gene is resistant to the enzyme. As in the case of other group I intron-containing genes that have been described in eukaryotes, which also encode site-specific endonucleases, the td intron is highly mobile and can insert into the intron-less td gene by a process initiated by endonuclease cleavage near the insertion site. Whether intron transposition reactions have any physiological significance to the phage, or represent an early imprint on the evolution of introns, remains to be determined.


Subject(s)
Introns , RNA Splicing , T-Phages/genetics , Base Sequence , Molecular Sequence Data , RNA, Messenger/metabolism
12.
Proc Natl Acad Sci U S A ; 87(9): 3574-8, 1990 May.
Article in English | MEDLINE | ID: mdl-2159153

ABSTRACT

The 1016-base-pair (bp) intron in the T4 bacteriophage thymidylate synthase gene (td) contains a 735-bp open reading frame that encodes a protein product with endonucleolytic activity. The endonuclease shows specificity for the intronless form of the td gene. Highly purified endonuclease cleaves the DNA of the intronless form of the td gene in vitro at 24 bp upstream of the exon 1-exon 2 junction, generating a 2-base staggered cut with 3'-hydroxyl overhangs. Although the endonuclease cleaves in exon 1, it requires some exon 2 sequence for recognition. The maximum recognition sequence lies in an 87-bp stretch, from 52 bp upstream to 35 bp downstream of the cleavage site, ending at 11 bp into exon 2. The td intron endonuclease appears involved in the conversion of the intronless form of td to intron-containing td gene in the T-even phages. A role for intron mobility is discussed.


Subject(s)
Endonucleases/genetics , Escherichia coli/genetics , Introns , T-Phages/genetics , Thymidylate Synthase/genetics , Base Sequence , Endonucleases/metabolism , Exons , Gene Conversion , Genes, Viral , Molecular Sequence Data , Restriction Mapping , Substrate Specificity , T-Phages/enzymology , Viral Structural Proteins/genetics
13.
FASEB J ; 2(3): 216-23, 1988 Mar 01.
Article in English | MEDLINE | ID: mdl-3280375

ABSTRACT

Group 1 introns, first demonstrated in the nuclear large rRNA of Tetrahymena thermophila and subsequently in many yeast, fungal mitochondrial, and chloroplast precursor RNAs, are capable of intron excision and exon ligation in vitro, although this process occurs much more rapidly in vivo. The discovery and characterization of a similar intron in the T4 phage thymidylate synthase gene (td) led to the finding of additional group 1 introns in other T4 genes and in genes of the related T2 and T6 phages. Because protein factors are not required in the splicing of group 1 introns in vitro, it has been postulated that the precursor RNA can assume a critical conformation enabling it to undergo site-specific autocatalytic cleavage and ligation (self-splicing). By means of site-directed mutation, it has been shown unequivocally that several sequence elements in the Tetrahymena rRNA intron are involved in the formation of base-paired stem structures that are essential for the self-splicing process. These sequence elements have been demonstrated in other eukaryotic group 1 introns, as well as in the td intron. In this brief review we shall describe the biochemical and structural properties of the td intron in relation to other newly found phage introns. The interesting implications arising from these revelations will also be discussed.


Subject(s)
RNA Splicing , T-Phages/genetics , Base Sequence , Biomechanical Phenomena , Introns
14.
J Bacteriol ; 169(9): 4368-75, 1987 Sep.
Article in English | MEDLINE | ID: mdl-2442142

ABSTRACT

Southern hybridization analyses of procaryotic DNA from Escherichia coli, lambda bacteriophage, and T1 to T7 phages were carried out. The hybridization probes used consisted of DNA restriction fragments derived from the T4 phage intron-containing thymidylate synthase gene (td) and short synthetic oligodeoxynucleotides defining specific exon and intron regions of the gene. It was shown that intact as well as restricted DNA from the T-even phages hybridized not only to both T4 phage td intron- and exon-specific probes but also to probes defining the td 5' (exon I-intron) and 3' (intron-exon II) presplice junctions. These data strongly suggest that, analogous to the T4 phage, only the T2 and T6 phages among the procaryotes tested contain interrupted td genes. The td intervening sequence in each phage is roughly 1 kilobase pair (kb) in size and interrupts the td gene at a site analogous to that in the T4 phage. This was confirmed by data from Northern (RNA) hybridization analysis of td-specific in vitro transcripts of these phage DNAs. [alpha-32P]GTP in vitro labeling of total RNA from T4 phage-infected cells produced five species of labeled RNAs that were 1, 0.9, 0.83, 0.75, and 0.6 kb in size. Only the 1-, 0.9-, and 0.75-kb species were labeled in RNA from T2- or T6-infected cells. The commonly present 1-kb RNA is the excised td intron, which exists in both linear and circular forms in the respective T-even-phage-infected cells, while the 0.6-kb RNA unique to T4 may be the excised intron derived from the ribonucleotide reductase small subunit gene (nrdB) of the phage. The remaining labeled RNA species are likely candidates for other self-splicing introns.


Subject(s)
DNA, Viral/analysis , Genes, Viral , Introns , RNA Splicing , T-Phages/genetics , Thymidylate Synthase/genetics , DNA, Bacterial/analysis , Escherichia coli/genetics , Gene Expression Regulation , Nucleic Acid Hybridization , RNA, Bacterial/analysis , RNA, Viral/analysis , RNA, Viral/genetics , RNA, Viral/metabolism , T-Phages/enzymology
15.
Biochemistry ; 26(11): 3050-7, 1987 Jun 02.
Article in English | MEDLINE | ID: mdl-3038175

ABSTRACT

The splicing of a procaryotic precursor RNA transcribed from the T4 phage thymidylate synthase (td) gene with SP6 RNA polymerase was investigated in vitro. The intron excision-cyclization reaction increased progressively to 60 degrees C. Exon ligation, though barely detectable at the lower temperatures, was greatly enhanced at 60 degrees C. Both reactions required Mg2+. The addition of guanosine to the 5' end of an intron-exon II intermediate via a 3',5'-phosphodiester bond was essential for the ligation of exon I to exon II. The added guanosine and the first intron-encoded uridine are subsequently lost as a dinucleotide from the 5' end during cyclization of the linear form of the excised intron RNA. Exon ligation is intramolecular and occurs more readily in the nascent RNA molecule (cotranscriptionally) than in the finished transcript (posttranscriptionally). These data and the identification of various structural elements (P, Q, R, S, E, E') in the td intron that are found typically in eucaryotic class I introns firmly establish the td intron as the first example of class I intron of procaryotic origin.


Subject(s)
Escherichia coli/genetics , Genes, Viral , Genes , RNA Splicing , RNA, Viral/genetics , T-Phages/genetics , Thymidylate Synthase/genetics , Transcription, Genetic , DNA Restriction Enzymes , Nucleic Acid Hybridization , Plasmids , T-Phages/enzymology , Templates, Genetic
16.
Gene ; 57(1): 143-8, 1987.
Article in English | MEDLINE | ID: mdl-3322944

ABSTRACT

The nucleotide (nt) sequence in a 757-bp [corrected] segment downstream from the intron-containing T4 phage thymidylate synthase gene (td) has been determined. This region was found to contain two open reading frames (ORFs). The first ORF(ORF2) [corrected] 261 bp [corrected] in length, is 24 [corrected] nt downstream from the td gene. The second ORF(ORF3) [corrected]) is 200 bp long at 558 [corrected] nt from the td gene and extends to the end of the Eco RI fragment. The amino acid (aa) sequence (66 aa residues) deduced from the second truncated ORF shows 59% homology to the sequence of the N-terminal portion of the ribonucleotide reductase large subunit of either Escherichia coli (B1 subunit) or mouse (M1 subunit). This tentatively identifies the truncated gene to be the 5' end of the T4 phage ribonucleotide reductase subunit B1 (nrdA) gene and pinpoints its exact location on the T4 phage genomic map. Southern hybridization analysis suggests good sequence homology among the nrdA genes of various T-even phages.


Subject(s)
Escherichia coli/genetics , Genes, Viral , Genes , Ribonucleotide Reductases/genetics , T-Phages/genetics , Amino Acid Sequence , Base Sequence , Escherichia coli/enzymology , Exons , Introns , Macromolecular Substances , Molecular Sequence Data , Plasmids , Sequence Homology, Nucleic Acid , T-Phages/enzymology
18.
Cell ; 45(2): 157-66, 1986 Apr 25.
Article in English | MEDLINE | ID: mdl-3698096

ABSTRACT

The td gene contains a 735 bp open reading frame within its 1017 bp intron. A 12 nucleotide stretch may form a stable secondary structure with the putative Shine-Dalgarno sequence of the intron open reading frame and thus impair its translation. SP6 RNA polymerase transcripts of the td gene synthesized in vitro at 40 degrees C encompass a 2.7 kb primary transcript, a 1.7 kb mRNA, and a 1 kb intron RNA. The excised intron RNA consisted of linear and cyclized forms. RNAase H studies and resistance of the cyclized intron to linearization by HeLa cell debranching enzyme suggest it to be circular. Self-splicing of isolated td primary transcript occurred only marginally at 28 degrees C, but increased progressively to 50 degrees C, and required the presence of both Mg++ and a guanosine cofactor. An internal guide sequence is evident which may align the 5' splice site with the 3' end, presumably for precise exon ligation.


Subject(s)
RNA Splicing , T-Phages/genetics , Thymidylate Synthase/genetics , Viral Proteins/genetics , Base Sequence , DNA-Directed RNA Polymerases/metabolism , Genes , Genes, Viral , Guanosine/metabolism , Magnesium/metabolism , Nucleic Acid Conformation , RNA, Messenger/metabolism , RNA, Viral/metabolism
19.
J Biol Chem ; 261(1): 172-7, 1986 Jan 05.
Article in English | MEDLINE | ID: mdl-3941069

ABSTRACT

Peptide N-glycosidase from Flavobacterium meningosepticum cleaves complex as well as neutral glycoproteins (Plummer, T.H., Jr., Elder, J.H., Alexander, S., Phelan, A.W., and Tarentino, A.L. (1984) J. Biol. Chem. 259, 10700-10704). Examples of neutral glycoprotein substrates include ribonuclease B (one high mannose oligosaccharide chain) and yeast external invertase (nine chains/invertase subunit). The rate of deglycosylation by the glycosidase was greatly enhanced if the glycoprotein substrate was denatured prior to enzyme treatment, from a low of 11-fold for external invertase to a high of 844-fold for ribonuclease B. Peptide N-glycosidase F was unable to cleave the asparaginyl-N-acetylglucosamine bond in endo-beta-N-acetylglucosaminidase H-modified external invertase or ribonuclease B, although that in similarly modified glycopeptide substrate was cleaved. Ribonuclease B was digested sequentially with various exoglycosidases to produce an oligosaccharide chain of varied length. Using the resulting forms of ribonuclease B as substrates for peptide N-glycosidase F, the minimum oligosaccharide chain for cleavage was the di-N-acetyl-chitobiosyl core unit.


Subject(s)
Amidohydrolases/metabolism , Glycoproteins/metabolism , Mannose/metabolism , Oligosaccharides/metabolism , Chemical Phenomena , Chemistry , Flavobacterium/enzymology , Hexosaminidases/metabolism , Hot Temperature , Peptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine Amidase , Protein Denaturation , Ribonucleases/metabolism
20.
Gene ; 41(1): 93-102, 1986.
Article in English | MEDLINE | ID: mdl-2422090

ABSTRACT

The splice junction sequence of td mRNA from T4-infected cells has been determined (5'....GGU-CUA....3') and shown to be identical to that of the RNA ligation product encoded by the cloned gene [Belfort et al. Cell 41 (1985) 375-382]. The RNA processing functions, T4 RNA ligase, T4 polynucleotide kinase, and the host prr gene product appear not to be essential for exon ligation; neither are the host endoribonucleases RNase III, RNase P and RNase E required for intron excision. While these results are consistent with the autocatalytic splicing mechanism demonstrated in vitro [Chu et al. J. Biol. Chem. 260 (1985) 10680-10688], they leave unanswered the question of which protein(s), if any, might stimulate the in vivo reaction. Analysis of the products of the cloned td gene has led to identification of two td-encoded polypeptides, namely a polypeptide corresponding to the exon-I-coding sequence (NH2-TS), and the catalytically active thymidylate synthase (TS). Kinetic and nucleotide sequence data provide evidence that NH2-TS is the product of the primary transcript and that TS is encoded by spliced mRNA. These results suggest that splicing may provide a switch controlling the relative expression of NH2-TS and TS, two proteins with markedly different temporal appearances despite their identical transcriptional and translational start sites.


Subject(s)
RNA Splicing , RNA, Messenger/genetics , T-Phages/genetics , Base Sequence , Cloning, Molecular , Escherichia coli/genetics , Genes , Genes, Bacterial , Genes, Viral , Kinetics , Plasmids , RNA-Directed DNA Polymerase , Thymidylate Synthase/genetics
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