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1.
Plant Cell Physiol ; 62(6): 1044-1057, 2021 Oct 11.
Article in English | MEDLINE | ID: mdl-34086919

ABSTRACT

Ubiquitination, one of the most frequently occurring post-translational modifications, is essential for regulating diverse cellular processes in plants during abiotic stress. The E3 ubiquitin (Ub) ligase Arabidopsis thaliana really interesting new gene (RING) zinc finger 1 (AtRZF1) mutation is known to enhance drought tolerance in A. thaliana seedlings. To further investigate the function of AtRZF1 in osmotic stress, we isolated Ub-associated protein 1 (AtUAP1) which interacts with AtRZF1 using a yeast two-hybrid system. AtUAP1, a Ub-associated motif containing protein, increased the amount of Ub-conjugated AtRZF1. Moreover, AtUAP1 RNA interference lines were more tolerant to osmotic stress than wild type, whereas AtUAP1-overexpressing (OX) transgenic lines showed sensitive responses, including cotyledon greening, water loss, proline accumulation and changes in stress-related genes expression, indicating that AtUAP1 could negatively regulate dehydration-mediated signaling. In addition, AtUAP1-green fluorescent protein fusion protein was observed in the nuclei of root cells of transgenic seedlings. Genetic studies showed that the AtRZF1 mutation could rescue the sensitive phenotype of AtUAP1-OX lines in response to osmotic stress, suggesting that AtRZF1 was epistatic to AtUAP1 in dehydration signaling. Taken together, our findings describe a new component in the AtRZF1 ubiquitination pathway which controls the dehydration response in A. thaliana.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/physiology , Dehydration , Abscisic Acid/metabolism , Abscisic Acid/pharmacology , Arabidopsis/drug effects , Arabidopsis Proteins/genetics , Binding Sites , Gene Expression Regulation, Plant , Osmotic Pressure , Plants, Genetically Modified , Polyubiquitin/metabolism , Protein Domains , Protein Interaction Maps , Two-Hybrid System Techniques , Ubiquitination
2.
Stress Biol ; 1(1): 14, 2021 Nov 22.
Article in English | MEDLINE | ID: mdl-37676545

ABSTRACT

Soil salinity severely hampers agricultural productivity. Under salt stress, excess Na+ accumulation causes cellular damage and plant growth retardation, and membrane Na+ transporters play central roles in Na+ uptake and exclusion to mitigate these adverse effects. In this study, we performed sos1 suppressor mutant (named sup) screening to uncover potential genetic interactors of SOS1 and additional salt tolerance mechanisms. Map-based cloning and sequencing identified a group of mutants harboring dominant gain-of-function mutations in the vacuolar Na+/H+ antiporter gene AtNHX1. The gain-of-function variants of AtNHX1 showed enhanced transporter activities in yeast cells and increased salt tolerance in Arabidopsis wild type plants. Ion content measurements indicated that at the cellular level, these gain-of-function mutations resulted in increased cellular Na+ accumulation likely due to enhanced vacuolar Na+ sequestration. However, the gain-of-function suppressor mutants showed reduced shoot Na+ but increased root Na+ accumulation under salt stress, indicating a role of AtNHX1 in limiting Na+ translocation from root to shoot. We also identified another group of sos1 suppressors with loss-of-function mutations in the Na+ transporter gene AtHKT1. Loss-of-function mutations in AtHKT1 and gain-of-function mutations in AtNHX1 additively suppressed sos1 salt sensitivity, which indicates that the three transporters, SOS1, AtNHX1 and AtHKT1 function independently but coordinately in controlling Na+ homeostasis and salt tolerance in Arabidopsis. Our findings provide valuable information about the target amino acids in NHX1 for gene editing to improve salt tolerance in crops.

3.
Plant Physiol Biochem ; 143: 320-328, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31539761

ABSTRACT

Sulfate metabolism and glucose (Glc) signaling are important processes required for plant growth, development, and environmental responses. However, whether sulfate metabolism is involved in Arabidopsis response to Glc stress remains largely unclear. Recently, we have found that proline content alterative 17 (pca17) is a double-mutant line in which both AtRZF1 (for Arabidopsis thaliana Ring Zinc Finger 1) and AHL (for Arabidopsis Halotolerance 2-like) genes are mutated. It was found that insensitive response of atrzf1 mutant to abiotic stresses was suppressed in pca17 mutant by regulating proline metabolism. Here, pca17 appeared to have sensitive response to Glc treatment by reducing cysteine (Cys) and adenosine monophosphate (AMP) contents in sulfate metabolism. Under Glc treatment, transcript levels of sulfate metabolism-related genes were significantly lower in pca17 than those in wild-type (WT) and atrzf1. Furthermore, AHL-overexpressing transgenic lines displayed more insensitive phenotypes than WT during Glc condition while ahl RNAi lines exhibited sensitive responses based on several parameters, including seed germination rate, cotyledon greening percentage, root elongation, and fresh weight. Interestingly, the pca17 phenotype in applied AMP with Glc treatment was similar to atrzf1 phenotype. Taken together, our results indicate that AHL is involved in Glc response by modulating sulfate metabolism in Arabidopsis.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Proline/metabolism , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Gene Expression Regulation, Plant/genetics , Gene Expression Regulation, Plant/physiology , Glucose/metabolism , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , RNA Interference , Signal Transduction/genetics , Signal Transduction/physiology , Sulfates/metabolism
4.
Front Plant Sci ; 6: 974, 2015.
Article in English | MEDLINE | ID: mdl-26594223

ABSTRACT

Inducible gene expression is a gene regulatory mechanism central to plant response to environmental cues. The inducible genes are often repressed under normal growth conditions while their expression levels are significantly elevated by conditions such as abiotic stresses. Induction of gene expression requires both cis-acting DNA elements and trans-acting proteins that are modulated through signal transduction pathways. Here we report several molecular events that affect salt induced expression of the Arabidopsis AtSOT12 gene. Promoter deletion analysis revealed that DNA elements residing in the 5' UTR are required for the salt induced expression of AtSOT12. Cytosine methylation in the promoter was low and salt stress slightly increased the DNA methylation level, suggesting that DNA methylation may not contribute to AtSOT12 gene repression. Co-transcriptional processing of AtSOT12 mRNA including capping and polyadenylation site selection was also affected by salt stress. The percentage of capped mRNA increased by salt treatment, and the polyadenylation sites were significantly different before and after exposure to salt stress. The expression level of AtSOT12 under normal growth conditions was markedly higher in the oxi1 mutant defective of reactive oxygen species (ROS) signaling than in the wild type. Moreover, AtSOT12 transcript level was elevated by treatments with DPI and DMTU, two chemicals preventing ROS accumulation. These results suggest that repression of AtSOT12 expression may require physiological level of ROS and ROS signaling.

5.
J Integr Plant Biol ; 57(3): 313-24, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25073793

ABSTRACT

The precise roles of the B-box zinc finger family of transcription factors in plant stress are poorly understood. Functional analysis was performed on AtCOL4, an Arabidopsis thaliana L. CONSTANS-like 4 protein that is a putative novel transcription factor, and which contains a predicted transcriptional activation domain. Analyses of an AtCOL4 promoter-ß-glucuronidase (GUS) construct revealed substantial GUS activity in whole seedlings. The expression of AtCOL4 was strongly induced by abscisic acid (ABA), salt, and osmotic stress. Mutation in atcol4 resulted in increased sensitivity to ABA and salt stress during seed germination and the cotyledon greening process. In contrast, AtCOL4-overexpressing plants were less sensitive to ABA and salt stress compared to the wild type. Interestingly, in the presence of ABA or salt stress, the transcript levels of other ABA biosynthesis and stress-related genes were enhanced induction in AtCOL4-overexpressing and WT plants, rather than in the atcol4 mutant. Thus, AtCOL4 is involved in ABA and salt stress response through the ABA-dependent signaling pathway. Taken together, these findings provide compelling evidence that AtCOL4 is an important regulator for plant tolerance to abiotic stress.


Subject(s)
Abscisic Acid/pharmacology , Adaptation, Physiological , Arabidopsis Proteins/metabolism , Arabidopsis/physiology , Stress, Physiological , Transcription Factors/metabolism , Adaptation, Physiological/drug effects , Adaptation, Physiological/genetics , Arabidopsis/drug effects , Arabidopsis/genetics , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/genetics , Cell Nucleus/drug effects , Cell Nucleus/metabolism , Gene Expression Regulation, Plant/drug effects , Genes, Plant , Germination/drug effects , Germination/genetics , Glucuronidase/metabolism , Mannitol/pharmacology , Phenotype , Plants, Genetically Modified , Protein Structure, Tertiary , Protein Transport/drug effects , Salinity , Sodium Chloride/pharmacology , Stress, Physiological/drug effects , Stress, Physiological/genetics , Transcription Factors/chemistry , Transcription Factors/genetics , Transcriptional Activation/drug effects , Transcriptional Activation/genetics
6.
Plant Physiol Biochem ; 77: 7-14, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24525351

ABSTRACT

Protein ubiquitination is one of the major regulatory processes used by eukaryotic cells. The ubiquitin E3 ligase acts as a main determinant of substrate specificity. However, the precise roles of E3 ligase in plants to drought stress are poorly understood. In this study, a gourd family (Lagenaria siceraria) ortholog of Arabidopsis thaliana RING Zinc Finger 1 (AtRZF1) gene, designated LsRZF1, was identified and characterized. LsRZF1 was reduced by abscisic acid (ABA), osmotic stress, and drought conditions. Compared to wild type, transgenic Arabidopsis plants ectopic expressing LsRZF1 were hypersensitive to ABA and osmotic stress during early seedling development, indicating that LsRZF1 negatively regulates drought-mediated control of early seedling development. Moreover, the ectopic expression of the LsRZF1 gene was very influential in drought sensitive parameters including proline content, water loss, and the expression of dehydration stress-related genes. Furthermore, ubiquitin E3 ligase activity and genetic data indicate that AtRZF1 and LsRZF1 function in similar pathway to control proline metabolism in Arabidopsis under drought condition. Together, these results suggest that the E3 ligase LsRZF1 is an important regulator of water deficit stress during early seedling development.


Subject(s)
Adaptation, Physiological/genetics , Arabidopsis/genetics , Cucurbitaceae/genetics , Droughts , Genes, Plant , Ubiquitin-Protein Ligases/genetics , Water , Abscisic Acid , Amino Acid Sequence , Arabidopsis/growth & development , Arabidopsis/metabolism , Cucurbitaceae/growth & development , Cucurbitaceae/metabolism , Gene Expression , Gene Expression Regulation, Plant , Molecular Sequence Data , Plant Proteins/genetics , Plant Proteins/metabolism , Plants, Genetically Modified , Proline/genetics , Proline/metabolism , Seedlings/growth & development , Seedlings/metabolism , Stress, Physiological/genetics , Ubiquitin-Protein Ligases/metabolism , Ubiquitination/genetics , Zinc Fingers
7.
Plant Cell Rep ; 33(3): 401-9, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24258244

ABSTRACT

KEY MESSAGE: AtSKIP participated in cytokinin-regulated leaf initiation. Putative phosphorylated AtSKIP (AtSKIP (DD) ) displayed the opposite function in the leaf development from AtSKIP transgenic seedlings. ABSTRACT: AtSKIP, as a multiple protein, is involved in many physiological processes, such as flowering, cell cycle regulator, photomorphogenesis and stress tolerance. However, the mechanism of AtSKIP in these processes is unclear. Here, we identify one gene, AtSKIP, which is associated with cytokinin-regulated leaf growth process in Arabidopsis. The expression of AtSKIP was regulated by cytokinin. Leaf development in AtSKIP overproduced seedlings was independent of light, but promoted by cytokinin, and phosphorylation of AtSKIP (AtSKIP(DD)) partially interfered with AtSKIP function as a positive regulator in cytokinin signaling, indicative of true leaf formation, and the defects of AtSKIP(DD) in the true leaf formation could be recovered to some extent by the addition of cytokinin. Moreover, different cytokinin-responsive gene Authentic Response Regulator 7 (ARR7) promoter-GUS activity further proved that expression of AtSKIP or AtSKIP(DD) altered endogenous cytokinin signaling in plants. Together, these data indicate that AtSKIP participates in cytokinin-regulated promotion of leaf growth in photomorphogenesis, and that phosphorylation interferes with AtSKIP normal function.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Cytokinins/metabolism , Light , Transcription Factors/metabolism , Gene Expression Regulation, Plant , Phosphorylation , Plant Leaves/metabolism , Plant Proteins/metabolism , Signal Transduction
8.
Biochemistry ; 52(25): 4343-53, 2013 Jun 25.
Article in English | MEDLINE | ID: mdl-23692082

ABSTRACT

The roles of four conserved basic amino acids in the reaction catalyzed by the ferredoxin-dependent nitrate reductase from the cyanobacterium Synechococcus sp. PCC 7942 have been investigated using site-directed mutagenesis in combination with measurements of steady-state kinetics, substrate-binding affinities, and spectroscopic properties of the enzyme's two prosthetic groups. Replacement of either Lys58 or Arg70 by glutamine leads to a complete loss of activity, both with the physiological electron donor, reduced ferredoxin, and with a nonphysiological electron donor, reduced methyl viologen. More conservative, charge-maintaining K58R and R70K variants were also completely inactive. Replacement of Lys130 by glutamine produced a variant that retained 26% of the wild-type activity with methyl viologen as the electron donor and 22% of the wild-type activity with ferredoxin as the electron donor, while replacement by arginine produces a variant that retains a significantly higher percentage of the wild-type activity with both electron donors. In contrast, replacement of Arg146 by glutamine had minimal effect on the activity of the enzyme. These results, along with substrate-binding and spectroscopic measurements, are discussed in terms of an in silico structural model for the enzyme.


Subject(s)
Amino Acids, Basic/chemistry , Ferredoxins/chemistry , Nitrate Reductase/chemistry , Synechococcus/enzymology , Amino Acid Sequence , Amino Acid Substitution/genetics , Conserved Sequence , Glutamine/chemistry , Glutamine/genetics , Molecular Sequence Data , Nitrate Reductase/genetics , Substrate Specificity/genetics , Synechococcus/genetics
9.
Biochim Biophys Acta ; 1824(2): 392-403, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22155275

ABSTRACT

The arsenate reductase from the cyanobacterium Synechocystis sp. PCC 6803 has been characterized in terms of the redox properties of its cysteine residues and their role in the reaction catalyzed by the enzyme. Of the five cysteines present in the enzyme, two (Cys13 and Cys35) have been shown not to be required for catalysis, while Cys8, Cys80 and Cys82 have been shown to be essential. The as-isolated enzyme contains a single disulfide, formed between Cys80 and Cys82, with an oxidation-reduction midpoint potential (E(m)) value of -165mV at pH 7.0. It has been shown that Cys15 is the only one of the four cysteines present in Synechocystis sp. PCC 6803 glutaredoxin A required for its ability to serve as an electron donor to arsenate reductase, while the other three cysteines (Cys18, Cys36 and Cys70) play no role. Glutaredoxin A has been shown to contain a single redox-active disulfide/dithiol couple, with a two-electron, E(m) value of -220mV at pH 7.0. One cysteine in this disulfide/dithiol couple has been shown to undergo glutathionylation. An X-ray crystal structure, at 1.8Å resolution, has been obtained for glutaredoxin A. The probable orientations of arsenate reductase disulfide bonds present in the resting enzyme and in a likely reaction intermediate of the enzyme have been examined by in silico modeling, as has the surface environment of arsenate reductase in the vicinity of Cys8, the likely site for the initial reaction between arsenate and the enzyme.


Subject(s)
Arsenate Reductases/chemistry , Bacterial Proteins/chemistry , Glutaredoxins/chemistry , Synechocystis/enzymology , Arsenate Reductases/genetics , Arsenates/metabolism , Biocatalysis , Cloning, Molecular , Cysteine/chemistry , Glutathione/chemistry , Molecular Sequence Data , Oxidation-Reduction , Sequence Homology, Amino Acid
10.
Plant Cell Physiol ; 53(1): 193-203, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22121246

ABSTRACT

CCCH-type zinc finger proteins are important for developmental and environmental responses. However, the precise roles of these proteins in plant stress tolerance are poorly understood. Arabidopsis thaliana Oxidation-related Zinc Finger 2 (AtOZF2) (At4g29190) is an AtOZF1 homolog previously isolated from Arabidopsis, which confers oxidative stress tolerance on plants. The AtOZF2 protein is localized in the plasma membrane, as is AtOZF1. Disruption expression of AtOZF2 led to reduced root length and leaf size. AtOZF2 was implicated to be involved in the ABA and salinity responses. atozf2 antisense lines were more sensitive to ABA and salt stress during the seed germination and cotyledon greening processes. In contrast, AtOZF2-overexpressing plants were more insensitive to ABA and salt stress than the wild type. Interestingly, in the presence of ABA and salt stress, the transcript level of ABA insensitive 2 (ABI2), but not that of ABI1, in AtOZF2-overexpressing plants was lower than that in the wild type, whereas the expression of ABI2 in atozf2 was significantly enhanced. Thus, AtOZF2 is involved in the ABA and salt stress response through the ABI2-mediated signaling pathway. Taken together, these findings provide compelling evidence that AtOZF2 is an important regulator for plant tolerance to abiotic stress.


Subject(s)
Abscisic Acid/pharmacology , Arabidopsis Proteins/genetics , Arabidopsis/genetics , Carrier Proteins/genetics , Cell Membrane/metabolism , Phosphoprotein Phosphatases/metabolism , Sodium Chloride/pharmacology , Stress, Physiological/drug effects , Adaptation, Physiological/drug effects , Adaptation, Physiological/genetics , Arabidopsis/physiology , Arabidopsis Proteins/metabolism , Carrier Proteins/metabolism , Cell Membrane/drug effects , Gene Expression Regulation, Plant/drug effects , Gene Knockdown Techniques , Genes, Plant/genetics , Glucuronidase/metabolism , Organ Size/drug effects , Organ Size/genetics , Oxidation-Reduction/drug effects , Phenotype , Phosphoprotein Phosphatases/genetics , Plant Leaves/anatomy & histology , Plant Leaves/drug effects , Plant Leaves/genetics , Plant Roots/anatomy & histology , Plant Roots/drug effects , Plant Roots/genetics , Plants, Genetically Modified , Protein Transport/drug effects , RNA, Antisense/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism , Signal Transduction/drug effects , Signal Transduction/genetics , Stress, Physiological/genetics , Subcellular Fractions/drug effects , Subcellular Fractions/metabolism , Zinc Fingers
11.
Plant Cell Physiol ; 52(1): 149-61, 2011 Jan.
Article in English | MEDLINE | ID: mdl-21097475

ABSTRACT

Through sos3 (salt overly sensitive 3) suppressor screening, two allelic suppressor mutants that are weak alleles of the strong sos3 suppressor sos3hkt1-1 were recovered. Molecular characterization identified T-DNA insertions in the distal promoter region of the Arabidopsis thaliana HKT1 (AtHKT1, At4g10310) in these two weak sos3 suppressors, which results in physical separation of a tandem repeat from the proximal region of the AtHKT1 promoter. The tandem repeat is approximately 3.9 kb upstream of the ATG start codon and functions as an enhancer element to promote reporter gene expression. A putative small RNA target region about 2.6 kb upstream of the ATG start codon is heavily methylated. CHG and CHH methylation but not CG methylation is significantly reduced in the small RNA biogenesis mutant rdr2, indicating that non-CG methylation in this region is mediated by small RNAs. Analysis of AtHKT1 expression in rdr2 suggests that non-CG methylation in the putative small RNA target region represses AtHKT1 expression in shoots. The DNA methylation-deficient mutant met1-3 has nearly complete loss of total cytosine methylation in the putative small RNA target region and is hypersensitive to salt stress. The putative small RNA target region and the tandem repeat are essential for maintaining AtHKT1 expression patterns crucial for salt tolerance.


Subject(s)
Adaptation, Physiological , Arabidopsis Proteins/genetics , Arabidopsis/physiology , Cation Transport Proteins/genetics , DNA Methylation , Gene Expression Regulation, Plant , Promoter Regions, Genetic , Sodium Chloride , Symporters/genetics , Arabidopsis/genetics , Base Sequence , Molecular Sequence Data , Polymerase Chain Reaction
12.
Biochim Biophys Acta ; 1804(12): 2213-21, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20849982

ABSTRACT

AtTDX is an enzyme present in Arabidopsis thaliana which is composed of two domains, a thioredoxin (Trx)-motif containing domain and a tetratricopeptide (TPR)-repeat domain. This enzyme has been shown to function as both a thioredoxin and a chaperone. The midpoint potential (E(m)) of AtTDX was determined by redox titrations using the thiol-specific modifiers, monobromobimane (mBBr) and mal-PEG. A NADPH/Trx reductase (NTR) system was used both to validate these E(m) determination methods and to demonstrate that AtTDX is an electron-accepting substrate for NTR. Titrations of full-length AtTDX revealed the presence of a single two-electron couple with an E(m) value of approximately -260 mV at pH 7.0. The two cysteines present in a typical, conserved Trx active site (WCGPC), which are likely to play a role in the electron transfer processes catalyzed by AtTDX, have been replaced by serines by site-directed mutagenesis. These replacements (i.e., C304S, C307S, and C304S/C307S) resulted in a complete loss of the redox process detected using either the mBBr or mal-PEG method to monitor disulfide/dithiol redox couples. This result supports the conclusion that the couple with an E(m) value of -260 mV is a disulfide/dithiol couple involving Cys304 and Cys307. Redox titrations for the separately-expressed Trx-motif containing C-domain also revealed the presence of a single two-electron couple with an E(m) value of approximately -260 mV at 20°C. The fact that these two E(m) values are identical, provides additional support for assignment of the redox couple to a disulfide/dithiol involving C304 and C307. It was found that, while the disulfide/dithiol redox chemistry of AtTDX was not affected by increasing the temperature to 40°C, no redox transitions were observed at 50°C and higher temperatures. In contrast, Escherichia coli thioredoxin was shown to remain redox-active at temperatures as high as 60°C. The temperature-dependence of the AtTDX redox titration is similar to that observed for the redox activity of the protein in enzymatic assays.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/enzymology , Thioredoxins/metabolism , Amino Acid Motifs/genetics , Amino Acid Sequence , Amino Acid Substitution , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/genetics , Catalytic Domain/genetics , Circular Dichroism , Cysteine/chemistry , Cysteine/genetics , Cysteine/metabolism , Disulfides/metabolism , Electrophoresis, Polyacrylamide Gel , Kinetics , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed , Oxidation-Reduction , Protein Binding , Protein Structure, Tertiary , Sequence Homology, Amino Acid , Serine/chemistry , Serine/genetics , Serine/metabolism , Substrate Specificity , Temperature , Thioredoxin-Disulfide Reductase/metabolism , Thioredoxins/chemistry , Thioredoxins/genetics , Toluene/analogs & derivatives , Toluene/metabolism
13.
Biochemistry ; 49(36): 7790-7, 2010 Sep 14.
Article in English | MEDLINE | ID: mdl-20690702

ABSTRACT

In photosynthetic organisms, ferredoxin (Fd) interacts with many proteins, acting as a shuttle for electrons from Photosystem I to a group of enzymes involved in NADP(+) reduction, sulfur and nitrogen assimilation, and the regulation of carbon assimilation. The study of the dynamic interactions between ferredoxin and these enzymes by nuclear magnetic resonance is severely hindered by the paramagnetic [2Fe-2S] cluster of a ferredoxin. To establish whether ferredoxin in which the cluster has been replaced by Ga is a suitable diamagnetic mimic, the solution structure of Synechocystis Ga-substituted ferredoxin has been determined and compared with the structure of the native protein. The ensemble of 10 structures with the lowest energies has an average root-mean-square deviation of 0.30 +/- 0.05 A for backbone atoms and 0.65 +/- 0.04 A for all heavy atoms. Comparison of the NMR structure of GaFd with the crystal structure of the native Fd indicates that the general structural fold found for the native, iron-containing ferredoxin is conserved in GaFd. The ferredoxin contains a single gallium and no inorganic sulfide. The distortion of the metal binding loop caused by the single gallium substitution is small. The binding site on Fd for binding ferredoxin:NADP(+) reductase in solution, determined using GaFd, includes the metal binding loop and its surroundings, consistent with the crystal structures of related complexes. The results provide a structural justification for the use of the gallium-substituted analogue in interaction studies.


Subject(s)
Bacterial Proteins/chemistry , Ferredoxins/chemistry , Gallium/chemistry , Synechocystis/metabolism , Bacterial Proteins/metabolism , Binding Sites , Crystallography, X-Ray , Ferredoxins/metabolism , Gallium/metabolism , Hydrogen Bonding , Models, Molecular , Nuclear Magnetic Resonance, Biomolecular , Structure-Activity Relationship
14.
Plant Cell Environ ; 33(8): 1383-92, 2010 Aug 01.
Article in English | MEDLINE | ID: mdl-20374532

ABSTRACT

Sulphonation of small molecules by cytosolic sulphotransferases in mammals is an important process in which endogenous molecules are modified for inactivation/activation of their biological effects. Plants possess large numbers of sulphotransferase genes, but their biological functions are largely unknown. Here, we present a functional analysis of the Arabidopsis sulphotransferase AtSOT12 (At2g03760). AtSOT12 gene expression is strongly induced by salt, and osmotic stress and hormone treatments. The T-DNA knock-out mutant sot12 exhibited hypersensitivity to NaCl and ABA in seed germination, and to salicylic acid (SA) in seedling growth. In vitro enzyme activity assay revealed that AtSOT12 sulphonates SA, and endogenous SA levels suggested that sulphonation of SA positively regulates SA production. Upon challenging with the pathogen Pseudomonas syringae, sot12 mutant and AtSOT12 over-expressing lines accumulate less and more SA, respectively, when compared with wild type. Consistent with the changes in SA levels, the sot12 mutant was more susceptible, while AtSOT12 over-expressing plants are more resistant to pathogen infection. Moreover, pathogen-induced PR gene expression in systemic leaves was significantly enhanced in AtSOT12 over-expressing plants. The role of sulphonation of SA in SA production, mobile signalling and acquired systemic resistance is discussed.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/enzymology , Salicylic Acid/metabolism , Sulfotransferases/metabolism , Abscisic Acid/pharmacology , Arabidopsis/genetics , Arabidopsis/microbiology , Arabidopsis Proteins/genetics , Immunity, Innate , Mutagenesis, Insertional , Mutation , Plant Diseases/genetics , Pseudomonas syringae , Sodium Chloride/pharmacology
15.
Photosynth Res ; 103(2): 67-77, 2010 Feb.
Article in English | MEDLINE | ID: mdl-20039132

ABSTRACT

The ferredoxin-dependent nitrite reductase from the green alga Chlamydomonas reinhardtii has been cloned, expressed in Escherichia coli as a His-tagged recombinant protein, and purified to homogeneity. The spectra, kinetic properties and substrate-binding parameters of the C. reinhardtii enzyme are quite similar to those of the ferredoxin-dependent spinach chloroplast nitrite reductase. Computer modeling, based on the published structure of spinach nitrite reductase, predicts that the structure of C. reinhardtii nitrite reductase will be similar to that of the spinach enzyme. Chemical modification studies and the ionic-strength dependence of the enzyme's ability to interact with ferredoxin are consistent with the involvement of arginine and lysine residues on C. reinhardtii nitrite reductase in electrostatically-stabilized binding to ferredoxin. The C. reinhardtii enzyme has been used to demonstrate that hydroxylamine can serve as an electron-accepting substrate for the enzyme and that the product of hydroxylamine reduction is ammonia, providing the first experimental evidence for the hypothesis that hydroxylamine, bound to the enzyme, can serve as a late intermediate during the reduction of nitrite to ammonia catalyzed by the enzyme.


Subject(s)
Ammonia/metabolism , Chlamydomonas reinhardtii/enzymology , Ferredoxin-Nitrite Reductase/metabolism , Hydroxylamine/metabolism , Biocatalysis , Electron Spin Resonance Spectroscopy , Ferredoxin-Nitrite Reductase/chemistry , Ferredoxins/metabolism , Models, Molecular , Nitrites/metabolism , Osmolar Concentration , Oxidation-Reduction , Protein Structure, Secondary , Recombinant Proteins/metabolism , Spinacia oleracea/enzymology
16.
J Am Chem Soc ; 131(48): 17576-82, 2009 Dec 09.
Article in English | MEDLINE | ID: mdl-19908864

ABSTRACT

In oxygenic photosynthetic cells, carbon metabolism is regulated by a light-dependent redox signaling pathway through which the light signal is transmitted in the form of electrons via a redox chain comprising ferredoxin (Fd), ferredoxin:thioredoxin reductase (FTR), and thioredoxin (Trx). Trx affects the activity of a variety of enzymes via dithiol oxidation and reduction reactions. FTR reduces an intramolecular disulfide bridge of Trx, and Trx reduction involves a transient cross-link with FTR. NMR spectroscopy was used to investigate the interaction of Fd, FTR, and an m-type Trx. NMR titration experiments indicate that FTR uses distinct sites to bind Fd and Trx simultaneously to form a noncovalent ternary complex. The orientation of Trx-m relative to FTR was determined from the intermolecular paramagnetic broadening caused by the [4Fe-4S] cluster of FTR. Two models of the noncovalent binary complex of FTR/Trx-m based on the paramagnetic distance restraints were obtained. The models suggest that either a modest or major rotational movement of Trx must take place when the noncovalent binary complex proceeds to the covalent complex. This study demonstrates the complementarity of paramagnetic NMR and X-ray diffraction of crystals in the elucidation of dynamics in a transient protein complex.


Subject(s)
Ferredoxins/metabolism , Iron-Sulfur Proteins/metabolism , Oxidoreductases/metabolism , Thioredoxins/metabolism , Amino Acid Motifs , Amino Acid Sequence , Catalytic Domain , Crystallography, X-Ray , Ferredoxins/chemistry , Iron-Sulfur Proteins/chemistry , Magnetic Resonance Spectroscopy , Models, Molecular , Movement , Oxidoreductases/chemistry , Plant Proteins/chemistry , Plant Proteins/metabolism , Protein Binding , Solutions , Spinacia oleracea , Synechocystis/enzymology , Thioredoxins/chemistry
17.
J Biol Chem ; 284(45): 31181-9, 2009 Nov 06.
Article in English | MEDLINE | ID: mdl-19744922

ABSTRACT

NMR spectroscopy has been used to map the interaction domain on Escherichia coli thioredoxin for the thioredoxin- dependent 5'-adenylylsulfate reductase from Pseudomonas aeruginosa (PaAPR). Seventeen thioredoxin amino acids, all clustered around Cys-32 (the more surface-exposed of the two active-site cysteines), have been located at the PaAPR binding site. The center of the binding domain is dominated by nonpolar amino acids, with a smaller number of charged and polar amino acids located on the periphery of the site. Twelve of the amino acids detected by NMR have non-polar, hydrophobic side chains, including one aromatic amino acid (Trp-31). Four of the thioredoxin amino acids at the PaAPR binding site have polar side chains (Lys-36, Asp-61, Gln-62 and Arg-73), with three of the four having charged side chains. Site-directed mutagenesis experiments have shown that replacement of Lys-36, Asp-61, and Arg-73 and of the absolutely conserved Trp-31 significantly decreases the V(max) for the PaAPR-catalyzed reduction of 5'-adenylylsulfate, with E. coli thioredoxin serving as the electron donor. The most dramatic effect was observed with the W31A variant, which showed no activity as a donor to PaAPR. Although the thiol of the active-site Cys-256 of PaAPR is the point of the initial nucleophilic attack by reduced thioredoxin, mutagenic replacement of Cys-256 by serine has no effect on thioredoxin binding to PaAPR.


Subject(s)
Escherichia coli/metabolism , Oxidoreductases Acting on Sulfur Group Donors/metabolism , Pseudomonas aeruginosa/enzymology , Thioredoxins/chemistry , Thioredoxins/metabolism , Amino Acid Sequence , Binding Sites , Escherichia coli/chemistry , Escherichia coli/genetics , Models, Molecular , Molecular Sequence Data , Oxidoreductases Acting on Sulfur Group Donors/chemistry , Oxidoreductases Acting on Sulfur Group Donors/genetics , Protein Binding , Protein Structure, Tertiary , Pseudomonas aeruginosa/chemistry , Pseudomonas aeruginosa/genetics , Sequence Homology, Amino Acid , Thioredoxins/genetics
18.
Plant J ; 53(3): 554-65, 2008 Feb.
Article in English | MEDLINE | ID: mdl-17996020

ABSTRACT

Salt Overly Sensitive 1 (SOS1), a plasma membrane Na+/H+ antiporter in Arabidopsis, is a salt tolerance determinant crucial for the maintenance of ion homeostasis in saline stress conditions. SOS1 mRNA is unstable at normal growth conditions, but its stability is substantially increased under salt stress and other ionic and dehydration stresses. In addition, H2O2 treatment increases the stability of SOS1 mRNA. SOS1 mRNA is inherently unstable and rapidly degraded with a half-life of approximately 10 min. Rapid decay of SOS1 mRNA requires new protein synthesis. Stress-induced SOS1 mRNA stability is mediated by reactive oxygen species (ROS). NADPH oxidase is also involved in the upregulation of SOS1 mRNA stability, presumably through the control of extracellular ROS production. The cis-element required for SOS1 mRNA instability resides in the 500-bp region within the 2.2 kb at the 3' end of the SOS1 mRNA. Furthermore, mutations in the SOS1 gene render sos1 mutants more tolerant to paraquat, a non-selective herbicide causing oxidative stress, indicating that SOS1 plays negative roles in tolerance of oxidative stress. A hypothetical model for the signaling pathway involving SOS1-mediated pH changes, NADPH oxidase activation, apoplastic ROS production and downstream signaling transduction is proposed, and the biological significance of ROS-mediated induction of SOS1 mRNA stability is discussed.


Subject(s)
Arabidopsis/drug effects , RNA Stability/drug effects , Reactive Oxygen Species/metabolism , Sodium Chloride/pharmacology , Sodium-Hydrogen Exchangers/genetics , Arabidopsis/genetics , Arabidopsis/metabolism , Arabidopsis Proteins , Blotting, Northern , Gene Expression Regulation, Plant/drug effects , Hydrogen Peroxide/metabolism , Hydrogen-Ion Concentration , Signal Transduction , Sodium-Hydrogen Exchangers/metabolism
19.
Biosci Biotechnol Biochem ; 67(7): 1472-8, 2003 Jul.
Article in English | MEDLINE | ID: mdl-12913289

ABSTRACT

Protoporphyrinogen oxidase (Protox) is the last shared enzyme of the porphyrin pathway. As a continuation of our previous work in which the transgenic rice plants expressing the Bacillus subtilis Protox in the cytoplasm or the plastid showed resistance to diphenyl ether herbicide, this study was undertaken to identify the effects of tertapyrrole biosynthesis in these transgenic rice plants. The transgenic plants either targeted into plastids or expressed in cytoplasm showed higher Protox activity than wild-type plants did. Photosynthetic activity, measured as a quantum yield of photosystem II, was slightly higher in transgenic plants than in wild-type plants, but chlorophyll contents were not significantly different between transgenic and wild-type plants. As for porphyrin biosynthesis, both cytoplasm-expressed and plastid-targeted transgenic plants showed increased synthesis of aminolevulinic acid, Mg-Proto IX, and protoheme in comparison to wild-type plants whereas synthesis of protoporphyrin IX was similar for wild-type and transgenic plants. These results indicate that either cytoplasm or plastid expression of B. subtilis Protox in rice can upregulate the porphyrin pathway leading to increase in photosynthetic efficiency in plants.


Subject(s)
Oryza/genetics , Oryza/metabolism , Oxidoreductases Acting on CH-CH Group Donors/metabolism , Photosynthesis/physiology , Plastids/genetics , Tetrapyrroles/biosynthesis , Aminolevulinic Acid/metabolism , Bacillus subtilis/enzymology , Bacillus subtilis/genetics , Blotting, Western , Carbon Dioxide/metabolism , Chlorophyll/biosynthesis , Gene Expression , Genetic Vectors/genetics , Heme/metabolism , Oxidoreductases Acting on CH-CH Group Donors/genetics , Plants, Genetically Modified , Protoporphyrinogen Oxidase , RNA, Messenger/genetics , RNA, Messenger/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Solubility
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