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1.
Biochemistry ; 45(15): 4797-807, 2006 Apr 18.
Article in English | MEDLINE | ID: mdl-16605248

ABSTRACT

The structures of inactive mutants D144A and E78Q of the glycoside hydrolase family 8 (GH-8) endo-beta-1,4-d-xylanase (pXyl) from the Antarctic bacterium Pseudoalteromonas haloplanktis TAH3a in complex with its substrate xylopentaose (at 1.95 A resolution) and product xylotriose (at 1.9 A resolution) have been determined by X-ray crystallography. A detailed comparative analysis of these with the apo-enzyme and with other GH-8 structures indicates an induced fit mechanism upon ligand binding whereby a number of conformational changes and, in particular, a repositioning of the proton donor into a more catalytically competent position occurs. This has also allowed for the description of protein-ligand interactions in this enzyme and for the demarcation of subsites -3 to +3. An in-depth analysis of each of these subsites gives an insight into the structure-function relationship of this enzyme and the basis of xylose/glucose discrimination in family 8 glycoside hydrolases. Furthermore, the structure of the -1/+1 subsite spanning complex reveals that the substrate is distorted from its ground state conformation. Indeed, structural analysis and in silico docking studies indicate that substrate hydrolysis in GH-8 members is preceded by a conformational change, away from the substrate ground-state chair conformation, to a pretransition state local minimum (2)S(O) conformation.


Subject(s)
Endo-1,4-beta Xylanases/chemistry , Endo-1,4-beta Xylanases/metabolism , Glycoside Hydrolases/chemistry , Polysaccharides/metabolism , Pseudoalteromonas/enzymology , Binding Sites/genetics , Carbohydrate Conformation , Crystallography, X-Ray , Endo-1,4-beta Xylanases/genetics , Glycoside Hydrolases/genetics , Glycoside Hydrolases/metabolism , Hydrolysis , Models, Molecular , Mutation , Protein Binding , Protein Conformation , Pseudoalteromonas/chemistry , Pseudoalteromonas/metabolism , Substrate Specificity
2.
FEBS Lett ; 579(2): 302-12, 2005 Jan 17.
Article in English | MEDLINE | ID: mdl-15642336

ABSTRACT

An in silico survey of all known 3D-structures of glycoside hydrolases that contain a ligand in the -1 subsite is presented. A recurrent crucial positioning of active site residues indicates a common general strategy for electrostatic stabilisation directed to the carbohydrate's ring-oxygen at the transition state. This is substantially different depending on whether the enzyme's proton donor is syn or anti positioned versus the substrate. A comprehensive list of enzymes belonging to 42 different families is given and selected examples are described. An implication for an early evolution scenario of glycoside hydrolases is discussed.


Subject(s)
Glycoside Hydrolases/chemistry , Animals , Computational Biology , Glycoside Hydrolases/classification , Humans , Models, Chemical , Models, Molecular , Protein Structure, Quaternary , Protons , Static Electricity
3.
J Am Soc Mass Spectrom ; 15(3): 413-23, 2004 Mar.
Article in English | MEDLINE | ID: mdl-14998545

ABSTRACT

The use of the recently introduced Q-Trap mass spectrometer in the study of protein glycosylation is described. The combined ion trap and triple quadrupole scan functions make it a powerful system in both oligosaccharide and glycopeptide analysis. Several oligosaccharides, both linear and branched, were analyzed to obtain information on sequence, linkage, and branching. Quadrupole like MS/MS spectra with ion trap sensitivity but without the typical ion trap low mass cut-off were obtained. To determine the origin of fragments and to reveal the existence of new ions, the MS(3) capabilities of the system proved to be useful. Glycopeptides were selectively detected in peptide mixtures using the triple quadrupole precursor ion scan function, either in off-line experiments or during LC/MS using information dependent acquisition (IDA).


Subject(s)
Mass Spectrometry/instrumentation , Mass Spectrometry/methods , Polysaccharides/analysis , Proteins/chemistry , Animals , Cattle , Glucans/chemistry , Glycopeptides/chemistry , Glycosylation , Molecular Structure , Polysaccharides/chemistry , Ribonucleases/chemistry
5.
Sex Transm Infect ; 79(2): 157-9, 2003 Apr.
Article in English | MEDLINE | ID: mdl-12690142

ABSTRACT

OBJECTIVES: To assess to what extent hepatitis B vaccination of sex workers in Ghent, Belgium, is successful within the context of the existing health services and to compare this with alternative approaches such as outreach programmes; to compare two hepatitis B vaccination schemes in the outreach programme for sex workers. METHODS: Testing all first contacts (n = 1096) in the outreach programme for hepatitis B virus (HBV) markers assessed success of hepatitis B vaccination in routine services. The performance of the outreach service was measured by counting the number of sex workers who started hepatitis B vaccination in the programme. The hepatitis B vaccination schemes were assessed by analysing the number of people completing the vaccination. RESULTS: Naturally acquired HBV was found in 11.9% of 1096 sex workers (0.6% HBsAg), and 7% were vaccinated in existing services. In contrast, hepatitis B vaccination using outreach methodology was able to achieve higher vaccination rates: among non-immune sex workers 82.8% received the first dose of vaccine, and 71.5% the second. If given 1 month later, 67.9% received the third dose, in contrast with 47.9%, when given 6 months later. CONCLUSIONS: Existing services are not successful in vaccinating sex workers for HBV, in contrast with specifically targeted outreach services. Shorter intervals between vaccine doses gave better compliance.


Subject(s)
Hepatitis B Vaccines , Hepatitis B/prevention & control , Sex Work , Adolescent , Adult , Aged , Belgium , Female , Humans , Immunization Programs , Male , Middle Aged , Patient Compliance , Risk-Taking , Vaccination/methods
6.
FEBS Lett ; 538(1-3): 1-7, 2003 Mar 13.
Article in English | MEDLINE | ID: mdl-12633843

ABSTRACT

An in silico survey of the -1 subsite of all known 3D-structures of O-glycoside hydrolases containing a suitably positioned ligand has led to the recognition -- apparently without exceptions -- of a transition state stabilising hydrophobic platform which is complementary to a crucial hydrophobic patch of the ligand. This platform is family-specific and highly conserved. A comprehensive list is given with examples of enzymes belonging to 33 different families. Several typical constellations of platform - protein residues are described.


Subject(s)
Glycoside Hydrolases/metabolism , Animals , Binding Sites , Glycoside Hydrolases/chemistry , Species Specificity
7.
Anal Biochem ; 307(2): 361-7, 2002 Aug 15.
Article in English | MEDLINE | ID: mdl-12202255

ABSTRACT

The use of chromogenic substrates for evaluation of class I alpha-mannosidase is described. 2('),4(')-Dinitrophenyl-alpha-D-mannopyranoside allows rapid and sensitive assays of enzymatic activities, e.g., of heterologously expressed alpha-1,2-mannosidase from Trichoderma reesei. Interaction constants of several ligands with alpha-mannosidases from class I and II could also be determined. Furthermore, novel types of inhibitors derived from D-lyxose are presented. Methyl-alpha-D-lyxopyranosyl-(1(')-->2)-alpha-D-mannopyranoside is a potent inhibitor of the alpha-1,2-mannosidase from T. reesei (K(i)=600 microM) and since it probably spans subsites -1/+1, this disaccharide could be valuable in crystallographic studies of class I alpha-mannosidases.


Subject(s)
Chromogenic Compounds/metabolism , Enzyme Inhibitors/pharmacology , Mannosidases/antagonists & inhibitors , Mannosidases/metabolism , Binding, Competitive , Enzyme Inhibitors/chemical synthesis , Kinetics , Pichia/enzymology , Substrate Specificity , Trichoderma/enzymology , alpha-Mannosidase
8.
Arch Biochem Biophys ; 404(2): 243-53, 2002 Aug 15.
Article in English | MEDLINE | ID: mdl-12147262

ABSTRACT

A major extracellular endoglucanase purified to homogeneity from Thermoascus aurantiacus had a M(r) of 34 kDa and a pI of 3.7 and was optimally active at 70-80 degrees C and pH 4.0-4.4. It was stable at pH 2.8-6.8 at 50 degrees C for 48 h and maintained its secondary structure and folded conformation up to 70 degrees C at pH 5.0 and 2.8, respectively. A 33-amino acid sequence at the N terminus showed considerable homology with 14 microbial endoglucanases having highly conserved 8 amino acids (positions 10-17) and Gly, Pro, Gly, and Pro at positions 8, 22, 23, and 32, respectively. The enzyme is rich in Asp (15%) and Glu (10%) with a carbohydrate content of 2.7%. Polyclonal antibodies of endoglucanase cross-reacted with their own antigen and with other purified cellulases from T. aurantiacus. The endoglucanase was specific for polymeric substrates with highest activity toward carboxymethyl cellulose followed by barley beta-glucan and lichenan. It preferentially cleaved the internal glycosidic bonds of Glc(n) and MeUmbGlc(n) and possessed an extended substrate-binding site with five subsites. The data indicate that the endoglucanase from T. aurantiacus is a member of glycoside hydrolase family 5.


Subject(s)
Ascomycota/enzymology , Cellulase/chemistry , Calorimetry, Differential Scanning , Carboxymethylcellulose Sodium/chemistry , Cellulase/isolation & purification , Chromatography, High Pressure Liquid , Enzyme Activation/physiology , Enzyme Stability/physiology , Extracellular Space/enzymology , Glucans/chemistry , Hydrogen-Ion Concentration , Molecular Sequence Data , Protein Conformation , Protein Folding , Protein Structure, Secondary , Sequence Analysis, Protein , Sequence Homology, Amino Acid , Substrate Specificity/physiology , Temperature , Thermodynamics
9.
Appl Environ Microbiol ; 67(12): 5512-9, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11722900

ABSTRACT

The beta-xylosidase-encoding xlnD gene of Aspergillus niger 90196 was amplified by the PCR technique from first-strand cDNA synthesized on mRNA isolated from the fungus. The nucleotide sequence of the cDNA fragment was verified to contain a 2,412-bp open reading frame that encodes a 804-amino-acid propeptide. The 778-amino-acid mature protein, with a putative molecular mass of 85.1 kDa, was fused in frame with the Saccharomyces cerevisiae mating factor alpha1 signal peptide (MFalpha1(s)) to ensure correct posttranslational processing in yeast. The fusion protein was designated Xlo2. The recombinant beta-xylosidase showed optimum activity at 60 degrees C and pH 3.2 and optimum stability at 50 degrees C. The K(i(app)) value for D-xylose and xylobiose for the recombinant beta-xylosidase was determined to be 8.33 and 6.41 mM, respectively. The XLO2 fusion gene and the XYN2 beta-xylanase gene from Trichoderma reesei, located on URA3-based multicopy shuttle vectors, were successfully expressed and coexpressed in the yeast Saccharomyces cerevisiae under the control of the alcohol dehydrogenase II gene (ADH2) promoter and terminator. These recombinant S. cerevisiae strains produced 1,577 nkat/ml of beta-xylanase activity when expressing only the beta-xylanase and 860 nkat/ml when coexpressing the beta-xylanase with the beta-xylosidase. The maximum beta-xylosidase activity was 5.3 nkat/ml when expressed on its own and 3.5 nkat/ml when coexpressed with the beta-xylanase. Coproduction of the beta-xylanase and beta-xylosidase enabled S. cerevisiae to degrade birchwood xylan to D-xylose.


Subject(s)
Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Xylans/metabolism , Xylosidases/metabolism , Aspergillus niger/enzymology , Aspergillus niger/genetics , Cloning, Molecular , Hydrogen-Ion Concentration , Molecular Sequence Data , Recombinant Fusion Proteins/metabolism , Recombination, Genetic , Saccharomyces cerevisiae/growth & development , Temperature , Trichoderma/enzymology , Trichoderma/genetics , Xylan Endo-1,3-beta-Xylosidase , Xylose/metabolism , Xylosidases/genetics
10.
Biochem J ; 356(Pt 1): 19-30, 2001 May 15.
Article in English | MEDLINE | ID: mdl-11336632

ABSTRACT

The crystal structures of Family 7 glycohydrolases suggest that a histidine residue near the acid/base catalyst could account for the higher pH optimum of the Humicola insolens endoglucanase Cel7B, than the corresponding Trichoderma reesei enzymes. Modelling studies indicated that introduction of histidine at the homologous position in T. reesei Cel7A (Ala(224)) required additional changes to accommodate the bulkier histidine side chain. X-ray crystallography of the catalytic domain of the E223S/A224H/L225V/T226A/D262G mutant reveals that major differences from the wild-type are confined to the mutations themselves. The introduced histidine residue is in plane with its counterpart in H. insolens Cel7B, but is 1.0 A (=0.1 nm) closer to the acid/base Glu(217) residue, with a 3.1 A contact between N(epsilon2) and O(epsilon1). The pH variation of k(cat)/K(m) for 3,4-dinitrophenyl lactoside hydrolysis was accurately bell-shaped for both wild-type and mutant, with pK(1) shifting from 2.22+/-0.03 in the wild-type to 3.19+/-0.03 in the mutant, and pK(2) shifting from 5.99+/-0.02 to 6.78+/-0.02. With this poor substrate, the ionizations probably represent those of the free enzyme. The relative k(cat) for 2-chloro-4-nitrophenyl lactoside showed similar behaviour. The shift in the mutant pH optimum was associated with lower k(cat)/K(m) values for both lactosides and cellobiosides, and a marginally lower stability. However, k(cat) values for cellobiosides are higher for the mutant. This we attribute to reduced non-productive binding in the +1 and +2 subsites; inhibition by cellobiose is certainly relieved in the mutant. The weaker binding of cellobiose is due to the loss of two water-mediated hydrogen bonds.


Subject(s)
Cellulase/metabolism , Cellulose/metabolism , Histidine , Protein Engineering , Trichoderma/enzymology , Alkalies , Catalytic Domain/genetics , Cellobiose/analogs & derivatives , Cellulase/chemistry , Cellulase/genetics , Cellulose 1,4-beta-Cellobiosidase , Crystallography, X-Ray , Enzyme Stability , Hydrogen-Ion Concentration , Kinetics , Models, Molecular , Mutation , Trichoderma/genetics
11.
Arch Physiol Biochem ; 109(2): 180-90, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11780780

ABSTRACT

Isolation of glycosylated 26 kDa rat prolactin and subsequent proper carbohydrate characterization has so far not been reported. In the present work the hormone isoform was isolated to 95% homogeneity by preparative electrophoretic separation on Mini Prep Cell of rat pituitary homogenate. The isoform was then investigated by 2-mercaptoethanol gradient electrophoresis, Cleveland's sequential SDS-PAGE, digestion with endoproteinase Asp-N and N-glycanase. The glycosidic part of the isoform was examined in O-profiling and its monosaccharide composition obtained by FACE and HPAE-PAD analysis. The outcome of the experimental data is: 1) in contrast to unglycosylated 23 kDa rat prolactin, intra-chain S-S bridging is not affected in 26kDa rat prolactin, neither by transiting through a thiol gradient nor in sequential nonreducing/reducing SDS-PAGE; 2) the conformational availability of Asp residues involved in the endoproteinase Asp-N attack is the same in 23- and 26 kDa rat prolactin; the glycan moiety apparently does not cause steric hindrance at this level; 3) no glycosidic N-linkage could be detected, only O-linkage(s); 4) 26 kDa rat prolactin is no glycosyl-phosphaditylinositol-anchored protein; 5) in O-profiling an oligosaccharide chain of Mr +/- 1.4 kDa was recorded; 6) the monosaccharide composition obtained in FACE is peculiar in the sense that next to Fuc, Man, GalNac, GlcNac and NeuAc also Rib was determined; 7) HPAE-PAD analysis identified NeuAc subtypes; 8) in vitro, glycosylation of rat prolactin modulates immune recognition through steric hindrance of the access to the epitope sites.


Subject(s)
Oligosaccharides/chemistry , Prolactin/chemistry , Prolactin/isolation & purification , Animals , Chromatography, High Pressure Liquid , Electrophoresis, Polyacrylamide Gel , Female , Glycosylation , Immunoblotting , Protein Isoforms/chemistry , Protein Isoforms/isolation & purification , Rats , Rats, Wistar
12.
Appl Microbiol Biotechnol ; 54(2): 195-200, 2000 Aug.
Article in English | MEDLINE | ID: mdl-10968632

ABSTRACT

The xynB gene encoding the Bacillus pumilus beta-xylosidase was expressed separately and jointly with the Trichoderma reesei beta-xylanase (xyn2) gene in the yeast Saccharomyces cerevisiae. Both genes were placed under the transcriptional control of the glucose-derepressible alcohol dehydrogenase 2 promoter (ADH2p) and terminator (ADH2T) sequences. The xynB gene was fused in frame to the yeast mating factor alpha1 secretion sequence (MFalpha1s) to effect secretion in S. cerevisiae. The fusion protein was designated Xlo1. Xlo1 produced in S. cerevisiae exhibited low affinity for xylobiose, but eventually hydrolyzed xylobiose and xylotriose to the monomeric constituent, D-xylose. Coproduction of Xyn2 and Xlo1 by S. cerevisiae led to a 25% increase in the amount of reducing sugars released from birchwood xylan compared to S. cerevisiae producing only the Xyn2 beta-xylanase. However, no D-xylose was produced from birchwood xylan, presumably due to very low Xlo1 beta-xylosidase activity and its low affinity for xylobiose.


Subject(s)
Bacillus/genetics , Saccharomyces cerevisiae/genetics , Trichoderma/genetics , Xylosidases/genetics , Alcohol Dehydrogenase/genetics , Bacillus/enzymology , Blotting, Northern , Cloning, Molecular , Electrophoresis, Polyacrylamide Gel , Endo-1,4-beta Xylanases , Gene Expression , Promoter Regions, Genetic , RNA, Messenger/genetics , RNA, Messenger/metabolism , Recombinant Proteins/metabolism , Saccharomyces cerevisiae/enzymology , Sequence Analysis, DNA , Terminator Regions, Genetic , Trichoderma/enzymology , Xylans/metabolism , Xylose/metabolism , Xylosidases/metabolism
13.
Extremophiles ; 4(3): 137-44, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10879558

ABSTRACT

A xylanase belonging to family 10 is produced by Cryptococcus adeliae, an Antarctic yeast that exhibits optimal growth at low temperature. The mature glycosylated xylanase secreted by C. adeliae is composed of 338 amino acid residues and 26 +/- 3 osidic residues, and shares 84% identity with its mesophilic counterpart from C. albidus. The xylanase from C. adeliae is less thermostable than its mesophilic homologue when the residual activities are compared, and this difference was confirmed by differential scanning calorimetry experiments. In the range 0 degrees-20 degrees C, the cold-adapted xylanase displays a lower activation energy and a higher catalytic efficiency. All these observations suggest a less compact, more flexible molecular structure. Analysis of computerized molecular models built up for both psychrophilic and mesophilic xylanases indicates that the adaptation to cold consists of discrete changes in the tridimensional structure: of 53 substitutions, 22 are presumably involved in the adaptation process. These changes lead mainly to a less compact hydrophobic packing, to the loss of one salt bridge, and to a destabilization of the macrodipoles of the helices.


Subject(s)
Cryptococcus/enzymology , Xylosidases/chemistry , Xylosidases/metabolism , Amino Acid Sequence , Base Sequence , Cold Temperature , Cryptococcus/genetics , Cryptococcus/growth & development , DNA Primers/genetics , Enzyme Stability , Kinetics , Models, Molecular , Molecular Sequence Data , Protein Conformation , Sequence Homology , Thermodynamics , Xylan Endo-1,3-beta-Xylosidase , Xylosidases/genetics
14.
J Biol Chem ; 275(30): 23027-33, 2000 Jul 28.
Article in English | MEDLINE | ID: mdl-10767281

ABSTRACT

The Pseudomonas family 10 xylanase, Xyl10A, hydrolyzes beta1, 4-linked xylans but exhibits very low activity against aryl-beta-cellobiosides. The family 10 enzyme, Cex, from Cellulomonas fimi, hydrolyzes aryl-beta-cellobiosides more efficiently than does Xyl10A, and the movements of two residues in the -1 and -2 subsites are implicated in this relaxed substrate specificity (Notenboom, V., Birsan, C., Warren, R. A. J., Withers, S. G., and Rose, D. R. (1998) Biochemistry 37, 4751-4758). The three-dimensional structure of Xyl10A suggests that Tyr-87 reduces the affinity of the enzyme for glucose-derived substrates by steric hindrance with the C6-OH in the -2 subsite of the enzyme. Furthermore, Leu-314 impedes the movement of Trp-313 that is necessary to accommodate glucose-derived substrates in the -1 subsite. We have evaluated the catalytic activities of the mutants Y87A, Y87F, L314A, L314A/Y87F, and W313A of Xyl10A. Mutations to Tyr-87 increased and decreased the catalytic efficiency against 4-nitrophenyl-beta-cellobioside and 4-nitrophenyl-beta-xylobioside, respectively. The L314A mutation caused a 200-fold decrease in 4-nitrophenyl-beta-xylobioside activity but did not significantly reduce 4-nitrophenyl-beta-cellobioside hydrolysis. The mutation L314A/Y87A gave a 6500-fold improvement in the hydrolysis of glucose-derived substrates compared with xylose-derived equivalents. These data show that substantial improvements in the ability of Xyl10A to accommodate the C6-OH of glucose-derived substrates are achieved when steric hindrance is removed.


Subject(s)
Glucose/metabolism , Glycoside Hydrolases/metabolism , Leucine/metabolism , Pseudomonas/enzymology , Tyrosine/metabolism , Xylose/metabolism , Xylosidases/metabolism , Base Sequence , Cellobiose/analogs & derivatives , Cellobiose/metabolism , Circular Dichroism , DNA Primers , Glycoside Hydrolases/chemistry , Hydrolysis , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Substrate Specificity , Xylan Endo-1,3-beta-Xylosidase , Xylans/metabolism , Xylosidases/chemistry
15.
Biochem J ; 347 Pt 3: 865-73, 2000 May 01.
Article in English | MEDLINE | ID: mdl-10769193

ABSTRACT

A series of omega-epoxyalkyl glycosides of D-xylopyranose, xylobiose and xylotriose were tested as potential active-site-directed inhibitors of xylanases from glycoside hydrolase families10 and 11. Whereas family-10 enzymes (Thermoascus aurantiacus Xyn and Clostridium thermocellum Xyn Z) are resistant toelectrophilic attack of active-site carboxyl residues, glycosidehydrolases of family 11 (Thermomyces lanuginosus Xyn and Trichoderma reesei Xyn II) are irreversibly inhibited. Theapparent inactivation and association constants (k(i), 1/K(i)) are one order of magnitude higher for thexylobiose and xylotriose derivatives. The effects of the aglycone chainlength can clearly be described. Xylobiose and n-alkyl beta-D-xylopyranosides are competitive ligands and provide protectionagainst inactivation. MS measurements showed 1:1 stoichiometries inmost labelling experiments. Electrospray ionization MS/MS analysisrevealed the nucleophile Glu(86) as the modified residue inthe T. lanuginosus xylanase when 2,3-epoxypropyl beta-D-xylopyranoside was used, whereas the acid/base catalyst Glu(178) was modified by the 3,4-epoxybutyl derivative. The active-site residues Glu(86) and Glu(177) in T. reesei Xyn II are similarly modified, confirming earlier X-raycrystallographic data [Havukainen, Törrönen, Laitinen and Rouvinen (1996)Biochemistry 35, 9617-9624]. The inability of the omega-epoxyalkyl xylo(oligo)saccharide derivatives to inactivate family-10enzymes is discussed in terms of different ligand-subsiteinteractions.


Subject(s)
Glycosides/metabolism , Glycosides/pharmacology , Xylose/analogs & derivatives , Xylose/metabolism , Xylosidases/antagonists & inhibitors , Xylosidases/metabolism , Alkylation , Ascomycota/enzymology , Binding Sites , Binding, Competitive , Clostridium/enzymology , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/metabolism , Enzyme Inhibitors/pharmacology , Epoxy Compounds/chemistry , Epoxy Compounds/metabolism , Epoxy Compounds/pharmacology , Glutamic Acid/metabolism , Glycosides/chemistry , Kinetics , Ligands , Mass Spectrometry , Molecular Weight , Oligosaccharides/metabolism , Oligosaccharides/pharmacology , Peptide Fragments/chemistry , Peptide Fragments/metabolism , Substrate Specificity , Trichoderma/enzymology , Xylan Endo-1,3-beta-Xylosidase , Xylose/pharmacology , Xylosidases/chemistry , Xylosidases/classification
16.
J Biotechnol ; 77(2-3): 255-63, 2000 Feb 17.
Article in English | MEDLINE | ID: mdl-10682284

ABSTRACT

A cDNA encoding 1,2-alpha-D-mannosidase mds 1 from Trichoderma reesei was cloned. The largest open reading frame occupied 1571 bp. The predicted sequence contains 523 amino acid residues for a calculated molecular mass of 56,266 Da and shows high similarity to the amino acid sequences of 1,2-alpha-D-mannosidases from Aspergillus saitoi and Penicillium citrinum (51.6 and 51.0% identity, respectively). T. reesei mannosidase was produced as a recombinant enzyme in the yeast Pichia pastoris. Replacement of the N-terminal part with the prepro-signal peptide of the Saccharomyces cerevisiae alpha-mating factor resulted in high amounts of secreted enzyme. A three-step purification protocol was designed and the enzymatic properties were analyzed. The enzyme was characterized as a class-I mannosidase.


Subject(s)
Cloning, Molecular , Mannosidases/genetics , Mannosidases/metabolism , Trichoderma/enzymology , Amino Acid Sequence , Aspergillus/enzymology , DNA, Complementary , Mannosidases/chemistry , Mating Factor , Molecular Sequence Data , Penicillium/enzymology , Peptides/genetics , Pichia/enzymology , Pichia/genetics , Protein Sorting Signals/genetics , Recombinant Fusion Proteins , Recombinant Proteins , Saccharomyces cerevisiae/chemistry , Saccharomyces cerevisiae/genetics , Sequence Alignment
17.
Plant Cell Rep ; 19(10): 966-970, 2000 Oct.
Article in English | MEDLINE | ID: mdl-30754840

ABSTRACT

Synthesis of five different Sudan-ß-D-glucuronides (I, II, III, IV, and RedB) was performed by condensation of a set of red Sudan diazo dyes with methyl (1-deoxy-2,3,4-tri-O-acetyl-1-trichloroacetimidoyl-α-D-glucopyran)uronate. After the acid and alcohol groups had been deprotected, the resulting compounds were used for histochemical localization of ß-glucuronidase (GUS) activity in transgenic plants (Petunia hybrida, Arabidopsis thaliana, and Nicotiana tabacum) that contained the GUS reporter system. Because the cleavage of the ß-glucuronide results in the liberation of an insoluble Sudan dye, Sudan substrates gave no diffusion artifacts as described for the commonly used 5-bromo-4-chloro-3-indolyl-ß-D-glucuronide (X-gluc). A comparison of assays with different Sudan glucuronides and X-gluc demonstrated that the SudanIV variant is a valuable glucuronide substrate for the precise histochemical localization of GUS activity in transgenic plants.

18.
Structure ; 7(9): 1035-45, 1999 Sep 15.
Article in English | MEDLINE | ID: mdl-10508787

ABSTRACT

BACKGROUND: Cel6A is one of the two cellobiohydrolases produced by Trichoderma reesei. The catalytic core has a structure that is a variation of the classic TIM barrel. The active site is located inside a tunnel, the roof of which is formed mainly by a pair of loops. RESULTS: We describe three new ligand complexes. One is the structure of the wild-type enzyme in complex with a nonhydrolysable cello-oligosaccharide, methyl 4-S-beta-cellobiosyl-4-thio-beta-cellobioside (Glc)(2)-S-(Glc)(2), which differs from a cellotetraose in the nature of the central glycosidic linkage where a sulphur atom replaces an oxygen atom. The second structure is a mutant, Y169F, in complex with the same ligand, and the third is the wild-type enzyme in complex with m-iodobenzyl beta-D-glucopyranosyl-beta(1,4)-D-xylopyranoside (IBXG). CONCLUSIONS: The (Glc)(2)-S-(Glc)(2) ligand binds in the -2 to +2 sites in both the wild-type and mutant enzymes. The glucosyl unit in the -1 site is distorted from the usual chair conformation in both structures. The IBXG ligand binds in the -2 to +1 sites, with the xylosyl unit in the -1 site where it adopts the energetically favourable chair conformation. The -1 site glucosyl of the (Glc)(2)-S-(Glc)(2) ligand is unable to take on this conformation because of steric clashes with the protein. The crystallographic results show that one of the tunnel-forming loops in Cel6A is sensitive to modifications at the active site, and is able to take on a number of different conformations. One of the conformational changes disrupts a set of interactions at the active site that we propose is an integral part of the reaction mechanism.


Subject(s)
Cellulase/chemistry , Cellulase/metabolism , Trichoderma/enzymology , Binding Sites , Catalysis , Cellulase/genetics , Cellulose 1,4-beta-Cellobiosidase , Crystallography, X-Ray , Glucosides/chemistry , Glucosides/metabolism , Ligands , Mutation , Protein Conformation , Structure-Activity Relationship
19.
Arch Biochem Biophys ; 364(1): 61-6, 1999 Apr 01.
Article in English | MEDLINE | ID: mdl-10087165

ABSTRACT

Alkaline endo-1,4-beta-d-glucanase was secreted by Bacillus pumilus grown in submerged culture on a combination of oat spelt xylan and corn starch as carbon sources. The enzyme was purified to homogeneity by Sephacryl S-200 and Q-Sepharose column chromatography. The protein corresponded to molecular mass and pI values of 67 kDa and 3.7, respectively. The enzyme was optimally active at pH 7.0-8.0 and 60 degrees C and retained 50% of its optimum activity at pH 12. The most notable characteristic of the endoglucanase was its high stability up to pH 12 for 20 h at 30 degrees C. The enzyme hydrolyzed carboxymethylcellulose (CMC) and cello-oligosaccharides but was inactive on cellobiose, cellotriose, Avicel, xylan, 4-nitrophenyl-beta-d-glucoside, 4-nitrophenyl-beta-d-cellobioside, and 4-nitrophenyl-beta-d-xyloside. Analysis of reaction mixtures by HPLC revealed that the enzyme produced almost exclusively cellotriose when acted on CMC and appeared to hydrolyze cello-oligosaccharides by successively releasing cellotriose. The use of 4-methylumbelliferyl cello-oligosaccharides and the determination of bond cleavage frequency revealed that the enzyme preferentially hydrolyzed the third glycosidic bond adjacent to the glycon. The enzyme mediated a decrease in the viscosity of CMC associated with a release of only small amounts of reducing sugar. The enzyme activity was not inhibited by metal ions, surfactants, and chelating agents used as components of laundry detergents.


Subject(s)
Alkalies/pharmacology , Bacillus/enzymology , Cellulase/chemistry , Cellulase/isolation & purification , Catalysis , Cellobiose/pharmacology , Cellulase/metabolism , Chelating Agents/pharmacology , Chromatography, Gel , Chromatography, Ion Exchange , Electrophoresis, Polyacrylamide Gel , Enzyme Activation/drug effects , Enzyme Stability/drug effects , Enzyme Stability/physiology , Glucose/pharmacology , Hydrogen-Ion Concentration , Metals/pharmacology , Molecular Weight , Polysaccharides/metabolism , Substrate Specificity , Surface-Active Agents/pharmacology
20.
Carbohydr Res ; 306(3): 445-55, 1998 Jan.
Article in English | MEDLINE | ID: mdl-9648252

ABSTRACT

An endoxylanase (1,4-beta-D-xylan xylanohydrolase, EC 3.2.1.8) from the culture filtrates of T. lanuginosus ATCC 46882 was purified to homogeneity by DEAE-Sepharose and Bio-Gel P-30 column chromatographies. The purified endoxylanase had a specific activity of 888.8 mumol min-1 mg-1 protein and accounted for approximately 30% of the total protein secreted by this fungus. The molecular mass of native (non-denatured) and denatured endoxylanase were 26.3 and 25.7 kD as, respectively. Endoxylanase had a pI of 3.7 and was optimally active between pH 6.0-6.5 and at 75 degrees C. The enzyme showed > 50% of its original activity between pH 5.5-9.0 and at 85 degrees C. The pH and temperature stability studies revealed that this endoxylanase was almost completely stable between pH 5.0-9.0 and up to 60 degrees C for 5 h and at pH 10.0 up to 55 degrees C for 5 h. Thin-layer chromatography (TLC) analysis showed that endoxylanase released mainly xylose (Xyl) and xylobiose (Xyl2) from beechwood 4-O-methyl-D-glucuronoxylan, O-acetyl-4-O-methyl-D-glucuronoxylan and rhodymenan (a beta-(1-->3)-beta(1-->4)-xylan). Also, the enzyme released an acidic xylo-oligosaccharide from 4-O-methyl-D-glucuronoxylan, and an isomeric xylotetraose and an isomeric xylopentaose from rhodymenan. The enzyme hydrolysed [1-3H]-xylo-oligosaccharides in an endofashion, but the hydrolysis of [1-3H]-xylotriose appeared to proceed via transglycosylation. since the xylobiose was the predominant product. Endoxylanase was not active on pNPX and pNPC at 40 and 100 mM for up to 6 h, but showed some activity toward pNPX at 100 mM after 20-24 h. The results suggested that the endoxylanase from T. lanuginosus belongs to family 11.


Subject(s)
Mitosporic Fungi/enzymology , Xylosidases/chemistry , Disaccharides/metabolism , Endo-1,4-beta Xylanases , Enzyme Stability , Fungal Proteins/chemistry , Hydrogen-Ion Concentration , Isoelectric Point , Oligosaccharides/metabolism , Substrate Specificity , Temperature , Xylans/metabolism , Xylose/metabolism
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