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1.
Ecol Evol ; 14(7): e11619, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38952665

ABSTRACT

Access to high-quality food is critical for long-distance migrants to provide energy for migration and arrival at breeding grounds in good condition. We studied effects of changing abundance and availability of a marine food, common eelgrass (Zostera marina L.), on an arctic-breeding, migratory goose, black brant (Brant bernicla nigricans Lawrence 1846), at a key non-breeding site, Bahía San Quintín, Mexico. Eelgrass, the primary food of brant, is consumed when exposed by the tide or within reach from the water's surface. Using an individual-based model, we predicted effects of observed changes (1991-2013) in parameters influencing food abundance and availability: eelgrass biomass (abundance), eelgrass shoot length (availability, as longer shoots more within reach), brant population size (availability, as competition greater with more birds), and sea level (availability, as less food within reach when sea level higher). The model predicted that the ability to gain enough energy to migrate was most strongly influenced by eelgrass biomass (threshold January biomass for migration = 60 g m-2 dry mass). Conversely, annual variation in population size (except for 1998), was relatively low, and variation in eelgrass shoot length and sea level were not strongly related to ability to migrate. We used observed data on brant body mass at Bahía San Quintín and annual survival to test for effects of eelgrass biomass in the real system. The lowest observed values of body mass and survival were in years when biomass was below 60 g m-2, although in some years of low biomass body mass and/or survival was higher. This suggests that the real birds may have some capacity to compensate to meet their energy demands when eelgrass biomass is low. We discuss consequences for brant population trends and conservation.

2.
Food Chem Toxicol ; 164: 112999, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35427705

ABSTRACT

Consumer spray products release aerosols that can potentially be inhaled and reach the deep parts of the lungs. A thin layer of liquid, containing a mixture of proteins and lipids known as lung surfactant, coats the alveoli. Inhibition of lung surfactant function can lead to acute loss of lung function. We focused on two groups of spray products; 8 cleaning and 13 impregnation products, and in the context of risk assessment, used an in vitro method for assessing inhibition of lung surfactant function. Original spray-cans were used to generate aerosols to measure aerodynamic particle size distribution. We recreated a real-life exposure scenario to estimate the alveolar deposited dose. Most impregnation products inhibited lung surfactant function at the lowest aerosolization rate, whereas only two cleaning products inhibited function at the highest rates. We used inhibitory dose and estimated alveolar deposition to calculate the margin of safety (MoS). The MoS for the inhibitory products was ≤1 for the impregnation products, while much larger for the cleaning products (>880). This risk assessment focused on the risk of lung surfactant function disruption and provides knowledge on an endpoint of lung toxicity that is not investigated by the currently available OECD test guidelines.


Subject(s)
Inhalation Exposure , Pulmonary Surfactants , Aerosols/toxicity , Excipients , Inhalation Exposure/adverse effects , Inhalation Exposure/analysis , Lung/metabolism , Particle Size , Pulmonary Surfactants/metabolism , Pulmonary Surfactants/toxicity , Risk Assessment , Surface-Active Agents/toxicity
3.
Proc Biol Sci ; 288(1964): 20211913, 2021 12 08.
Article in English | MEDLINE | ID: mdl-34847767

ABSTRACT

The extinct Haast's eagle or harpagornis (Hieraaetus moorei) is the largest known eagle. Historically, it was first considered a predator, then a scavenger, but most recent authors have favoured an active hunting ecology. However, the veracity of proposed similarities to carrion feeders has not been thoroughly tested. To infer feeding capability and behaviour in harpagornis, we used geometric morphometric and finite-element analyses to assess the shape and biomechanical strength of its neurocranium, beak and talons in comparison to five extant scavenging and predatory birds. The neurocranium of harpagornis is vulture-like in shape whereas its beak is eagle-like. The mechanical performance of harpagornis is closer to extant eagles under biting loads but is closest to the Andean condor (Vultur gryphus) under extrinsic loads simulating prey capture and killing. The talons, however, are eagle-like and even for a bird of its size, able to withstand extremely high loads. Results are consistent with the proposition that, unlike living eagles, harpagornis habitually killed prey larger than itself, then applied feeding methods typical of vultures to feed on the large carcasses. Decoupling of the relationship between neurocranium and beak shape may have been linked to rapid evolution.


Subject(s)
Eagles , Falconiformes , Raptors , Animals , Beak , New Zealand , Predatory Behavior
4.
mSystems ; 6(3): e0018521, 2021 Jun 29.
Article in English | MEDLINE | ID: mdl-34128695

ABSTRACT

Antimicrobial resistance (AMR) is an important global health threat that impacts millions of people worldwide each year. Developing methods that can detect and predict AMR phenotypes can help to mitigate the spread of AMR by informing clinical decision making and appropriate mitigation strategies. Many bioinformatic methods have been developed for predicting AMR phenotypes from whole-genome sequences and AMR genes, but recent studies have indicated that predictions can be made from incomplete genome sequence data. In order to more systematically understand this, we built random forest-based machine learning classifiers for predicting susceptible and resistant phenotypes for Klebsiella pneumoniae (1,640 strains), Mycobacterium tuberculosis (2,497 strains), and Salmonella enterica (1,981 strains). We started by building models from alignments that were based on a reference chromosome for each species. We then subsampled each chromosomal alignment and built models for the resulting subalignments, finding that very small regions, representing approximately 0.1 to 0.2% of the chromosome, are predictive. In K. pneumoniae, M. tuberculosis, and S. enterica, the subalignments are able to predict multiple AMR phenotypes with at least 70% accuracy, even though most do not encode an AMR-related function. We used these models to identify regions of the chromosome with high and low predictive signals. Finally, subalignments that retain high accuracy across larger phylogenetic distances were examined in greater detail, revealing genes and intergenic regions with potential links to AMR, virulence, transport, and survival under stress conditions. IMPORTANCE Antimicrobial resistance causes thousands of deaths annually worldwide. Understanding the regions of the genome that are involved in antimicrobial resistance is important for developing mitigation strategies and preventing transmission. Machine learning models are capable of predicting antimicrobial resistance phenotypes from bacterial genome sequence data by identifying resistance genes, mutations, and other correlated features. They are also capable of implicating regions of the genome that have not been previously characterized as being involved in resistance. In this study, we generated global chromosomal alignments for Klebsiella pneumoniae, Mycobacterium tuberculosis, and Salmonella enterica and systematically searched them for small conserved regions of the genome that enable the prediction of antimicrobial resistance phenotypes. In addition to known antimicrobial resistance genes, this analysis identified genes involved in virulence and transport functions, as well as many genes with no previous implication in antimicrobial resistance.

5.
Database (Oxford) ; 20212021 01 28.
Article in English | MEDLINE | ID: mdl-33507271

ABSTRACT

Single-exon coding sequences (CDSs), also known as 'single-exon genes' (SEGs), are defined as nuclear, protein-coding genes that lack introns in their CDSs. They have been studied not only to determine their origin and evolution but also because their expression has been linked to several types of human cancers and neurological/developmental disorders, and many exhibit tissue-specific transcription. We developed SinEx DB that houses DNA and protein sequence information of SEGs from 10 mammalian genomes including human. SinEx DB includes their functional predictions (KOG (euKaryotic Orthologous Groups)) and the relative distribution of these functions within species. Here, we report SinEx 2.0, a major update of SinEx DB that includes information of the occurrence, distribution and functional prediction of SEGs from 60 completely sequenced eukaryotic genomes, representing animals, fungi, protists and plants. The information is stored in a relational database built with MySQL Server 5.7, and the complete dataset of SEG sequences and their GO (Gene Ontology) functional assignations are available for downloading. SinEx DB 2.0 was built with a novel pipeline that helps disambiguate single-exon isoforms from SEGs. SinEx DB 2.0 is the largest available database for SEGs and provides a rich source of information for advancing our understanding of the evolution, function of SEGs and their associations with disorders including cancers and neurological and developmental diseases. Database URL: http://v2.sinex.cl/.


Subject(s)
Databases, Genetic , Eukaryota , Animals , Eukaryota/genetics , Exons/genetics , Gene Ontology , Humans , Introns
6.
Parasitol Res ; 119(7): 2363-2367, 2020 Jul.
Article in English | MEDLINE | ID: mdl-32500369

ABSTRACT

Rhipicephalus appendiculatus is the major tick vector of Theileria parva, an apicomplexan protozoan parasite that causes the most economically important and lethal disease of cattle in East and central Africa. The African cape buffalo (Syncerus caffer) is the major wildlife host of T. parva from southern Uganda and Kenya to southern Africa. We show herein that R. appendiculatus appears to be absent from the two largest national parks in northern Uganda. Syncerus caffer is common in both of these national parks, specifically Murchison falls (MFNP) and Kidepo Valley (KVNP). We re-confirmed the previously reported absence of T. parva in buffalo sampled in the two northern parks based on RLB data using a nested PCR based on the T. parva p104 gene. By contrast, T. parva-infected R. appendiculatus ticks and parasite-infected buffalo were present in Lake Mburo (LMNP) in South central Uganda. This suggests that the distribution of R. appendiculatus, which is predicted to include the higher rainfall regions of northern Uganda, may be limited by additional, as yet unknown factors.


Subject(s)
Arachnid Vectors/parasitology , Buffaloes/parasitology , Rhipicephalus/parasitology , Theileria parva/physiology , Animals , Animals, Wild/parasitology , DNA, Protozoan/genetics , Ecosystem , Genes, Protozoan/genetics , Parks, Recreational , Theileria parva/genetics , Theileriasis/parasitology , Theileriasis/transmission , Uganda/epidemiology
7.
mSystems ; 5(1)2020 Jan 21.
Article in English | MEDLINE | ID: mdl-31964771

ABSTRACT

Machine learning has proven to be a powerful method to predict antimicrobial resistance (AMR) without using prior knowledge for selected bacterial species-antimicrobial combinations. To date, only species-specific machine learning models have been developed, and to the best of our knowledge, the inclusion of information from multiple species has not been attempted. The aim of this study was to determine the feasibility of including information from multiple bacterial species to predict AMR for an individual species, since this may make it easier to train and update resistance predictions for multiple species and may lead to improved predictions. Whole-genome sequence data and susceptibility profiles from 3,528 Mycobacterium tuberculosis, 1,694 Escherichia coli, 658 Salmonella enterica, and 1,236 Staphylococcus aureus isolates were included. We developed machine learning models trained by the features of the PointFinder and ResFinder programs detected to predict binary (susceptible/resistant) AMR profiles. We tested four feature representation methods to determine the most efficient way for introducing features into the models. When training the model only on the Mycobacterium tuberculosis isolates, high prediction performances were obtained for the six AMR profiles included. By adding information on ciprofloxacin from the additional 3,588 isolates, there was no reduction in performance for the other antimicrobials but an increased performance for ciprofloxacin AMR profile prediction for Mycobacterium tuberculosis and Escherichia coli In conclusion, the species-independent models can predict multi-AMR profiles for multiple species without losing any robustness.IMPORTANCE Machine learning is a proven method to predict AMR; however, the performance of any machine learning model depends on the quality of the input data. Therefore, we evaluated different methods of representing information about mutations as well as mobilizable genes, so that the information can serve as input for a robust model. We combined data from multiple bacterial species in order to develop species-independent machine learning models that can predict resistance profiles for multiple antimicrobials and species with high performance.

8.
BMC Vet Res ; 14(1): 4, 2018 Jan 05.
Article in English | MEDLINE | ID: mdl-29304792

ABSTRACT

BACKGROUND: Trypanocidal drugs have been used to control African animal trypanosomosis for several decades. In Ethiopia, these drugs are available from both authorized (legal) and unauthorized (illegal) sources but documentation on utilization practices and quality of circulating products is scanty. This study looked at the practices of trypanocidal drug utilization by farmers and the integrity of active ingredient in trypanocides sold in Gurage zone, south western Ethiopia. The surveys were based on a structured questionnaire and drug quality determination of commonly used brands originating from European and Asian companies and sold at both authorized and unauthorized markets. One hundred farmers were interviewed and 50 drug samples were collected in 2013 (Diminazene aceturate = 33 and Isometamidium chloride = 17; 25 from authorized and 25 from unauthorized sources). Samples were tested at the OIE-certified Veterinary Drug Control Laboratory (LACOMEV) in Dakar, Senegal, by using galenic standards and high performance liquid chromatography. RESULTS: Trypanosomosis was found to be a major threat according to all interviewed livestock keepers in the study area. Diminazene aceturate and isometamidium chloride were preferred by 79% and 21% of the respondents respectively, and 85% of them indicated that an animal receives more than six treatments per year. About 60% of these treatments were reported to be administered by untrained farmers. Trypanocidal drug sources included both unauthorized outlets (56%) and authorized government and private sources (44%). A wide availability and usage of substandard quality drugs was revealed. Twenty eight percent of trypanocidal drugs tested failed to comply with quality requirements. There was no significant difference in the frequency of non-compliance between diminazene-based and isometamidium chloride products (P = 0.87) irrespective of the marketing channel (official and unofficial). However, higher rates of non-compliant trypanocides were detected for drugs originating from Asia than from Europe (P = 0.029). CONCLUSION: The findings revealed the presence of risk factors for the development of drug resistance, i.e. wide distribution of poor quality drugs as well as substandard administration practices. Therefore, it is strongly recommended to enforce regulatory measures for quality control of veterinary drugs, to expand and strengthen veterinary services and to undertake trypanocidal drug efficacy studies of wider coverage.


Subject(s)
Cattle Diseases/drug therapy , Diminazene/analogs & derivatives , Phenanthridines/standards , Trypanocidal Agents/administration & dosage , Trypanocidal Agents/standards , Animal Husbandry , Animals , Cattle , Diminazene/administration & dosage , Diminazene/standards , Diminazene/therapeutic use , Drug Resistance , Ethiopia , Humans , Phenanthridines/administration & dosage , Phenanthridines/therapeutic use , Surveys and Questionnaires , Trypanocidal Agents/therapeutic use , Trypanosomiasis/drug therapy , Trypanosomiasis/veterinary
9.
Transbound Emerg Dis ; 65(1): e55-e62, 2018 Feb.
Article in English | MEDLINE | ID: mdl-28710814

ABSTRACT

Rift Valley fever (RVF) is an acute mosquito-borne viral zoonosis whose outbreaks are often associated with prolonged rainfall and flooding, during which large numbers of vectors emerge. Recent studies into the inter-epidemic maintenance of RVF virus (RVFV) suggest that both vertical transmission in vectors and direct transmission between hosts act in combination with predisposing factors for persistence of the virus. A comparative longitudinal survey was carried out in Tana River County, Kenya, in irrigated, riverine and pastoral ecosystems from September 2014-June 2015. The objectives were to investigate the possibility of low-level RVFV transmission in these ecosystems during an inter-epidemic period (IEP), examine variations in RVFV seroprevalence in sheep and goats and determine the risk factors for transmission. Three hundred and sixteen small ruminants were selected and tested for immunoglobulin G antibodies against RVFV nucleoprotein using a competitive ELISA during six visits. Data on potential risk factors were also captured. Inter-epidemic RVFV transmission was evidenced by 15 seroconversions within the irrigated and riverine villages. The number of seroconversions was not significantly different (OR = 0.66, CI = 0.19-2.17, p = .59) between irrigated and riverine areas. No seroconversions were detected in the pastoral ecosystem. This study highlights the increased risk of inter-epidemic RVFV transmission posed by irrigation, through provision of necessary environmental conditions that enable vectors access to more breeding grounds, resting places and shade, which favour their breeding and survival.


Subject(s)
Antibodies, Viral/blood , Disease Outbreaks/veterinary , Mosquito Vectors/virology , Rift Valley Fever/epidemiology , Rift Valley fever virus/immunology , Animals , Ecosystem , Epidemics/veterinary , Female , Geography , Immunoglobulin G/blood , Kenya/epidemiology , Longitudinal Studies , Male , Rift Valley Fever/prevention & control , Rift Valley Fever/virology , Rift Valley fever virus/isolation & purification , Risk Factors , Ruminants/virology , Seroconversion , Seroepidemiologic Studies , Zoonoses/epidemiology
10.
Transbound Emerg Dis ; 65(2): e231-e242, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29119682

ABSTRACT

Tick-borne diseases are considered a major hindrance to the health and productive performance of cattle in Bangladesh. To elucidate the epidemiology of tick-borne pathogens (TBPs) in local cattle, a cross-sectional study was performed in the 12 subdistricts (Upazilas) of Mymensingh district in Bangladesh. Blood samples and ticks were collected from 384 clinically healthy cattle kept by 135 farmers from 96 randomly selected villages. DNA extracted from the blood samples was subsequently screened by polymerase chain reaction (PCR) and a Reverse Line Blot (RLB) hybridization assay using an in-house prepared chemiluminescence solution for the presence of Anaplasma, Ehrlichia, Rickettsia, Babesia and Theileria spp. A total of 2,287 ticks were collected from 232 infested cattle (60.4%, 232/384) and identified morphologically as Rhipicephalus (Boophilus) microplus (n = 1,432, 62.6%) and Haemaphysalis bispinosa (n = 855; 37.4%). The RLB results demonstrated that the majority of the cattle (62.2%) were infected with at least one TBP. Theileria orientalis infections were most common (212/384, 55.2%) followed by infections with Anaplasma bovis (137/384, 35.67%), Anaplasma marginale (16/384, 4.17%), Babesia bigemina (4/384, 1.04%) and Babesia bovis (2/384, 0.52%). A previously uncharacterized Anaplasma sp. (Anaplasma sp. Mymensingh) and Babesia sp. (Babesia sp. Mymensingh), which are genetically closely related to Anaplasma platys and B. bigemina, were detected in 50 of 384 (13.0%) and 1 of 384 (0.3%) of the blood samples, respectively. Key risk factors for the occurrence of T. orientalis, A. marginale and Anaplasma sp. Mymensingh were identified. In conclusion, this study revealed that cattle in Mymensingh district are mainly infested with R. microplus and H. bispinosa ticks and may carry multiple TBPs. In addition, two previously uncharacterized pathogens were detected in the bovine blood samples. The pathogenicity of these species remains to be determined.


Subject(s)
Anaplasma/isolation & purification , Babesia/isolation & purification , Cattle Diseases/epidemiology , Tick-Borne Diseases/veterinary , Ticks , Anaplasma/genetics , Animals , Babesia/genetics , Bacterial Typing Techniques/veterinary , Bangladesh/epidemiology , Cattle , Cattle Diseases/microbiology , Cattle Diseases/parasitology , Cross-Sectional Studies , Ehrlichia/genetics , Ehrlichia/isolation & purification , Multilocus Sequence Typing/veterinary , Phylogeny , Polymerase Chain Reaction/veterinary , Rickettsia/genetics , Rickettsia/isolation & purification , Theileria/genetics , Theileria/isolation & purification , Tick-Borne Diseases/epidemiology , Tick-Borne Diseases/microbiology , Tick-Borne Diseases/parasitology , Ticks/microbiology , Ticks/parasitology
11.
Vet Parasitol ; 236: 86-92, 2017 Mar 15.
Article in English | MEDLINE | ID: mdl-28288771

ABSTRACT

African Animal Trypanosomosis (AAT) is a major disease of cattle in Togo and its control is essentially based on chemotherapy. However, because of excessive use of trypanocides during the past decades, chemo-resistance in the parasites has developed. In order to assess the current situation of AAT and resistance to trypanocidal drugs in Northern Togo, a study was conducted on cattle from December 2012 to August 2013 in the regions of Kara and Savanes. An initial cross-sectional survey was carried out in 40 villages using the Haematocrit Centrifugation Technique (HCT). Out of these, 5 villages with a trypanosome prevalence of >10% were selected for a block treatment study (BT) with diminazene diaceturate (DA: 3.5mg/kg for a 14-day follow-up) and isometamidium chloride (ISM: 0.5mg/kg for a 28-day follow-up). Positive blood samples collected during the parasitological surveys and an equivalent number of negatives were further analyzed by PCR-RFLP for trypanosome species confirmation and molecular diagnosis of resistance to DA in Trypanosoma congolense. The results from 1883 bovine blood samples confirmed a high overall trypanosome prevalence of 10.8% in Northern Togo. PCR-RFLP revealed that T. congolense is the dominant pathogenic trypanosome species (50.5%) followed by T. vivax (27.3%), and T. brucei (16.2%). The BT showed varying levels of treatment failures ranging from 0 to 30% and from 0 to 50% for DA and for ISM respectively, suggesting the existence of resistant trypanosome populations in the study area. Our results show that AAT still represents a major obstacle to the development of cattle husbandry in Northern Togo. In areas of high AAT risk, a community-based integrated strategy combining vector control, rational use of trypanocidal drugs and improving the general condition of the animals is recommended to decision makers.


Subject(s)
Cattle Diseases/prevention & control , Drug Resistance , Trypanocidal Agents/pharmacology , Trypanosoma congolense/drug effects , Trypanosomiasis, African/veterinary , Trypanosomiasis, Bovine/parasitology , Animals , Breeding , Cattle , Cattle Diseases/epidemiology , Cattle Diseases/parasitology , Communicable Disease Control , Cross-Sectional Studies , Diminazene/analogs & derivatives , Diminazene/pharmacology , Phenanthridines/pharmacology , Prevalence , Togo/epidemiology , Treatment Failure , Trypanosoma/drug effects , Trypanosomiasis/epidemiology , Trypanosomiasis/parasitology , Trypanosomiasis/prevention & control , Trypanosomiasis/veterinary , Trypanosomiasis, African/epidemiology , Trypanosomiasis, African/parasitology , Trypanosomiasis, African/prevention & control , Trypanosomiasis, Bovine/epidemiology , Trypanosomiasis, Bovine/prevention & control
12.
J Fish Biol ; 90(4): 1584-1596, 2017 Apr.
Article in English | MEDLINE | ID: mdl-28239851

ABSTRACT

Detailed computational fluid dynamics simulations for the rostrum of three species of sawfish (Pristidae) revealed that negligible turbulent flow is generated from all rostra during lateral swipe prey manipulation and swimming. These results suggest that sawfishes are effective stealth hunters that may not be detected by their teleost prey's lateral line sensory system during pursuits. Moreover, during lateral swipes, the rostra were found to induce little velocity into the surrounding fluid. Consistent with previous data of sawfish feeding behaviour, these data indicate that the rostrum is therefore unlikely to be used to stir up the bottom to uncover benthic prey. Whilst swimming with the rostrum inclined at a small angle to the horizontal, the coefficient of drag of the rostrum is relatively low and the coefficient of lift is zero.


Subject(s)
Feeding Behavior , Hydrodynamics , Skates, Fish/physiology , Swimming/physiology , Animals , Lateral Line System
13.
Prev Vet Med ; 126: 151-8, 2016 Apr 01.
Article in English | MEDLINE | ID: mdl-26907208

ABSTRACT

Trypanocidal drugs remain the most accessible and thus commonly used means of controlling tsetse transmitted animal African trypanosomosis. In Togo, trypanocides are sold on official as well as unofficial markets, but the quality of these trypanocides is undocumented so a drug quality assessment study was conducted from May 2013 to June 2014. Trypanocides supplied by European, Indian and Chinese pharmaceutical companies and sold on official and unofficial markets in Togo were purchased. In total fifty-two trypanocides were obtained, 24 of these samples from official markets and 28 from unofficial markets made up of a total of 36 diminazene diaceturate and 16 isometamidium chloride hydrochloride samples. The samples were analysed in the reference laboratory of the OIE (World Organisation for Animal Health), Laboratory for the Control of Veterinary Medicines (LACOMEV) in Dakar which uses galenic testing and high performance liquid chromatography (HPLC) testing as standard reference analysis methods. The results revealed a high proportion of trypanocides of sub-standard quality on the Togolese market: 40% were non-compliant to these quality reference standards. All of the HPLC non-compliant samples contained lower amounts of active ingredient compared to the concentration specified on the packaging. Non-compliance was higher in samples from the unofficial (53.57%) than from the official markets (25%; p=0.04).The main drug manufacturers, mostly of French origin in the study area, supply quality drugs through the official legal distribution circuit. Products of other origins mostly found on illegal markets present a significantly lower quality.


Subject(s)
Diminazene/analogs & derivatives , Phenanthridines/standards , Trypanocidal Agents/standards , Chromatography, High Pressure Liquid , Diminazene/chemistry , Diminazene/standards , Pharmacies/standards , Phenanthridines/chemistry , Quality Control , Togo
14.
Med Vet Entomol ; 27(2): 222-5, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23002954

ABSTRACT

Changes in agricultural practices and the resulting extinction of wildlife have led to the reduction or disappearance of savannah tsetse species. Riparian tsetse such as Glossina palpalis gambiensis Vanderplank 1949 and Glossina tachinoides Westwood 1850 (Diptera: Glossinidae) continue to persist in peridomestic sites, transmitting trypanosomiasis. At present, little is known about interspecies differences in feeding behaviour in these two species in southeast Mali, or of the phenomenon of multiple bloodmeals. To study these topics, 279 samples of G. p. gambiensis and G. tachinoides containing host DNA, caught in the Sikasso region between November 2008 and April 2009, were analysed by applying host species-specific primers and sequencing. Human accounted for > 66% of G. p. gambiensis bloodmeals, whereas G. tachinoides contained in equal parts DNA of human, cattle or both, showing a significantly higher proportion of multiple host use. Further, the trypanosome infection rate was found to be three-fold higher in G. tachinoides. Logistic regression analysis revealed double-feeding and infection to be independent of one another, but showed infection to be correlated with engorgement in G. p. gambiensis and female sex in G. tachinoides. Enhanced host-seeking activities paired with the high trypanosome infection rate found in G. tachinoides would indicate that this species has a higher vectorial capacity than G. p. gambiensis.


Subject(s)
Insect Vectors/physiology , Insect Vectors/parasitology , Trypanosomiasis, African/transmission , Trypanosomiasis, African/veterinary , Tsetse Flies/physiology , Tsetse Flies/parasitology , Animals , Cattle , Feeding Behavior , Female , Host Specificity , Humans , Logistic Models , Male , Mali/epidemiology , Sequence Analysis, DNA , Species Specificity , Trypanosoma/physiology , Trypanosomiasis, African/epidemiology
15.
J Biomech ; 45(15): 2702-5, 2012 Oct 11.
Article in English | MEDLINE | ID: mdl-22954713

ABSTRACT

Finite Element Analysis (FEA) is now widely used to analyse the mechanical behaviour of bone structures. Ideally, simulations are validated against experimental data. To date, validation of Finite Element Models (FEMs) has been 2 Dimensional (2D) only, being based on comparison with surface-mounted strain gauge readings. In this study we present a novel 3-Dimensional (3D) approach to validation that allows comparison of modelled with experimental results between any two points in 3D space throughout the structure, providing magnitude and direction data for comparison, internally and externally. Specifically, we validate a FEM of a rat tibia, including trabecular network geometry, using a material testing stage housed within a microCT scanner. We further apply novel landmark based morphometric approaches to more effectively compare modelled and experimental results. 542 landmark points on the cortical and trabecular bone surfaces of the model were selected and validated in 3D against experimental data. This approach may hold considerable potential in fields wherein a better understanding of the mechanical behaviour of trabecular networks is important, e.g., the studies of osteoporosis and trabecular loss after orthopaedic implant insertion.


Subject(s)
Finite Element Analysis , Tibia/anatomy & histology , Animals , Computer Simulation , Models, Biological , Rats , Rats, Wistar , Reproducibility of Results , Stress, Mechanical , Tibia/diagnostic imaging , Tibia/physiology , X-Ray Microtomography
16.
J Theor Biol ; 301: 1-14, 2012 May 21.
Article in English | MEDLINE | ID: mdl-22342680

ABSTRACT

The ability to warp three-dimensional (3D) meshes from known biological morphology to fit other known, predicted or hypothetical morphologies has a range of potential applications in functional morphology and biomechanics. One of the most challenging of these applications is Finite Element Analysis (FEA), a potentially powerful non-destructive tool in the prediction of mechanical behaviour. Geometric morphometrics is another typically computer-based approach commonly applied in morphological studies that allows for shape differences between specimens to be quantified and analysed. There has been some integration of these two fields in recent years. Although a number of shape warping approaches have been developed previously, none are easily accessible. Here we present an easily accessed method for warping meshes based on freely available software and test the effectiveness of the approach in FEA using the varanoid lizard mandible as a model. We further present new statistical approaches, strain frequency plots and landmark point strains, to analyse FEA results quantitatively and further integrate FEA with geometric morphometrics. Using strain frequency plots, strain field, bending displacements and landmark point strain data we demonstrate that the mechanical behaviour of warped specimens reproduces that of targets without significant error. The influence of including internal cavity morphology in FEA models was also examined and shown to increase bending displacements and strain magnitudes in FE models. The warping approaches presented here will be useful in a range of applications including the generation and analysis of virtual reconstructions, generic models that approximate species means, hypothetical morphologies and evolutionary intermediaries.


Subject(s)
Lizards/anatomy & histology , Mandible/anatomy & histology , Models, Anatomic , Animals , Biomechanical Phenomena , Biometry/methods , Computational Biology/methods , Finite Element Analysis , Imaging, Three-Dimensional/methods , Phylogeny , Stress, Mechanical
17.
J Biomech ; 44(3): 430-5, 2011 Feb 03.
Article in English | MEDLINE | ID: mdl-21129747

ABSTRACT

Although a strong correlation between jaw mechanics and prey selection has been demonstrated in bony fishes (Osteichthyes), how jaw mechanics influence feeding performance in cartilaginous fishes (Chondrichthyes) remains unknown. Hence, tooth shape has been regarded as a primary predictor of feeding behavior in sharks. Here we apply Finite Element Analysis (FEA) to examine form and function in the jaws of two threatened shark species, the great white (Carcharodon carcharias) and the sandtiger (Carcharias taurus). These species possess characteristic tooth shapes believed to reflect dietary preferences. We show that the jaws of sandtigers and great whites are adapted for rapid closure and generation of maximum bite force, respectively, and that these functional differences are consistent with diet and dentition. Our results suggest that in both taxa, insertion of jaw adductor muscles on a central tendon functions to straighten and sustain muscle fibers to nearly orthogonal insertion angles as the mouth opens. We argue that this jaw muscle arrangement allows high bite forces to be maintained across a wider range of gape angles than observed in mammalian models. Finally, our data suggest that the jaws of sub-adult great whites are mechanically vulnerable when handling large prey. In addition to ontogenetic changes in dentition, further mineralization of the jaws may be required to effectively feed on marine mammals. Our study is the first comparative FEA of the jaws for any fish species. Results highlight the potential of FEA for testing previously intractable questions regarding feeding mechanisms in sharks and other vertebrates.


Subject(s)
Bite Force , Feeding Behavior/physiology , Jaw/anatomy & histology , Jaw/physiology , Mastication/physiology , Animals , Biomechanical Phenomena , Sharks/anatomy & histology , Sharks/physiology
18.
Rev Sci Instrum ; 81(7): 073902, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20687737

ABSTRACT

Brillouin light scattering spectroscopy is a powerful technique for the study of fast magnetization dynamics with both frequency and wavevector resolutions. Here, we report on a distinct improvement of this spectroscopic technique toward two-dimensional wide-range wavevector selectivity in a backward scattering geometry. Spin-wave wavevectors oriented perpendicularly to the bias magnetic field are investigated by tilting the sample within the magnet gap. Wavevectors which are oriented parallel to the applied magnetic field are analyzed by turning the entire setup, including the magnet system. The setup features a wide selectivity of wavevectors up to 2.04x10(5) rad/cm for both orientations, and allows selecting and measuring wavevectors of dipole- and exchange-dominated spin waves of any orientation to the magnetization simultaneously.

19.
Transbound Emerg Dis ; 57(1-2): 28-32, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20537098

ABSTRACT

Trypanocidal drugs are the most commonly purchased and used livestock input by resource-poor farmers in sub-Saharan Africa. The effective use of trypanocidal drugs by smallholder farmers is threatened by the development of widespread resistance. This is a particular concern for smallholder crop-livestock farmers in the cotton zone of West Africa. A recent project funded by the Germany Ministry for Economic Cooperation and Development (BMZ) confirmed significant resistance to trypanocidal drugs in villages with high trypanosomosis risk in Burkina Faso and Mali. Strategies for resistance prevention were investigated. Keeping trypanotolerant cattle was found to be an effective disease management strategy, but farmers' preference for trypano-susceptible breeds, for reasons unrelated to animal health, suggest that the intromission of zebu genotype will continue. Community vector control was found to be effective in managing trypanosomosis in the presence of resistance and the high-level participatory approach tested was found to be more sustainable than low-level approaches previously used in the region. This suggests that participatory vector control with appropriate external support is likely to be a viable option for implementing resistance 'clean-up'. Promoting rational drug use (RDU) emerged as a promising prevention strategy, with clear improvements in farmer knowledge, farmer practice and animal health outcomes. However, policy studies showed low understanding of the problem of resistance and the absence of an enabling environment for RDU. Engagement was initiated with actors involved in the problem of resistance and for its solution, including manufacturers, sellers and users of drugs, regulators and extension providers.


Subject(s)
Drug Resistance , Trypanocidal Agents/pharmacology , Trypanosoma/drug effects , Trypanosomiasis, African/veterinary , Agriculture/methods , Animals , Burkina Faso/epidemiology , Cattle , Conservation of Natural Resources , Disease Management , Education , Gossypium , Guinea/epidemiology , Health Knowledge, Attitudes, Practice , Humans , Mali/epidemiology , Trypanosomiasis, African/drug therapy , Trypanosomiasis, African/epidemiology
20.
Man Ther ; 15(1): 74-9, 2010 Feb.
Article in English | MEDLINE | ID: mdl-19679503

ABSTRACT

The aim of this study was to determine the variability of the thrust parameters produced by practitioners performing a high velocity spinal manipulative therapy technique (toggle-recoil) normally applied to the neck. Fourteen participants performed three thrust trials, separated by >30minutes, on a patient simulation device. Force and displacement generated during the thrusts were simultaneously recorded and analysed off line. Peak thrust force ranged from 18.2 to 246N with a mean of 111.2N (SD 48.8). Time to peak thrust force ranged from 20 to 100ms, mean 67.5 ms (SD 13.1). Peak thrust displacement ranged from 6.1 to 28.9mm, mean 24.1mm (SD 4.9) and time to peak thrust displacement ranged from 22.5 to 105ms, mean 59.4ms (SD 13.8). This study demonstrates that the force and displacement induced by any individual practitioner on a simulator can vary by up to 50% during a toggle-recoil thrust. Furthermore, different practitioners may vary in their force by as much 100% and in displacement by 50% when the toggle-recoil spinal manipulative procedure is performed.


Subject(s)
Chiropractic/methods , Manipulation, Chiropractic/methods , Manipulation, Spinal/methods , Biomechanical Phenomena , Cervical Vertebrae , Chiropractic/education , Chiropractic/standards , Clinical Competence , Electromyography , Humans , Manipulation, Chiropractic/standards , Manipulation, Spinal/standards , Patient Positioning , Psychomotor Performance , Range of Motion, Articular , Students, Health Occupations , Task Performance and Analysis , Time Factors
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